CA2405721A1 - Transcription factor stress-related proteins and methods of use in plants - Google Patents

Transcription factor stress-related proteins and methods of use in plants Download PDF

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Publication number
CA2405721A1
CA2405721A1 CA002405721A CA2405721A CA2405721A1 CA 2405721 A1 CA2405721 A1 CA 2405721A1 CA 002405721 A CA002405721 A CA 002405721A CA 2405721 A CA2405721 A CA 2405721A CA 2405721 A1 CA2405721 A1 CA 2405721A1
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Prior art keywords
seq
protein
tfsrp
factor
zinc
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CA002405721A
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French (fr)
Other versions
CA2405721C (en
Inventor
Oswaldo Da Costa E Silva
Hans J. Bohnert
Nocha Van Thielen
Ruoying Chen
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BASF Plant Science GmbH
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Basf Plant Science Gmbh
Oswaldo Da Costa E Silva
Hans J. Bohnert
Nocha Van Thielen
Ruoying Chen
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Priority to CA2767239A priority Critical patent/CA2767239C/en
Publication of CA2405721A1 publication Critical patent/CA2405721A1/en
Application granted granted Critical
Publication of CA2405721C publication Critical patent/CA2405721C/en
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
    • C12N15/8271—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
    • C12N15/8273—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for drought, cold, salt resistance
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/415—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from plants
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8216—Methods for controlling, regulating or enhancing expression of transgenes in plant cells
    • C12N15/8217—Gene switch
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10—Transferases (2.)
    • C12N9/12—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
    • C12N9/1205—Phosphotransferases with an alcohol group as acceptor (2.7.1), e.g. protein kinases
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14—Hydrolases (3)
    • C12N9/16—Hydrolases (3) acting on ester bonds (3.1)
    • A—HUMAN NECESSITIES
    • A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01K—ANIMAL HUSBANDRY; CARE OF BIRDS, FISHES, INSECTS; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
    • A01K2217/00—Genetically modified animals
    • A01K2217/05—Animals comprising random inserted nucleic acids (transgenic)

Abstract

A transgenic plant transformed by a Transcription Factor Stress-Related Protein (TFSRP) coding nucleic acid, wherein expression of the nucleic acid sequence in the plant results in increased tolerance to environmental stress as compared to a wild type variety of the plant. Also provided are agricultural products, including seeds, produced by the transgenic plants.
Also provided are isolated TFSRPs, and isolated nucleic acid coding TFSRPs, and vectors and host cells containing the latter.

Claims (32)

1. A transgenic plant cell transformed by a Transcription Factor Stress-Related Protein (TFSRP) coding nucleic acid, wherein expression of the nucleic acid in the plant cell results in increased tolerance to an environmental stress as compared to a wild type variety of the plant cell and wherein the TFSRP is selected from the group consisting of 1) a AP2 Similar-2 protein (APS-2); 2) a Zinc-Finger Factor-2 protein (ZF-
2); 3) a Zinc-Finger Factor-3 protein (ZF-3); 4) a Zinc-Finger Factor-4 protein (ZF-4);
5) a Zinc-Finger Factor-5 protein (ZF-5); 6) a MYB-1 protein (MYB-1); 7) a CAAT-Box Binding Factor protein-3 (CABF-3); 8) a Sigma Factor Like protein (SFL-1); and orthologs thereof.

2. The transgenic plant cell of Claim 1, wherein the TFSRP is selected from the group consisting of 1) APS-2 as defined in SEQ 1D N0:17; 2) ZF-2 as defined in SEQ
ID
N0:18; 3) ZF-3 as defined in SEQ ID N0:19; 4) ZF-4 as defined in SEQ ID N0:20;
S) ZF-5 as defined in SEQ ID N0:21; 6) MYB-1 as defined in SEQ ID N0:22; 7) CABF-3 as defined in SEQ ID N0:23 and 8) SFL-1 as defined in SEQ ID N0:24.
3. The transgenic plant cell of Claim 1, wherein the TFSRP coding nucleic acid is selected from the group consisting of 1) APS-2 as defined in SEQ ID N0:9; 2) as defined in SEQ ID NO:10; 3) ZF-3 as defined in SEQ ID NO:11; 4) ZF-4 as defined in SEQ ID N0:12; 5) ZF-5 as defined in SEQ ID N0:13; 6) MYB-1 as defined in SEQ ID N0:14; 7) CABF-3 as defined in SEQ ID NO:15 and 8) SFL-1 as defined in SEQ ID N0:16.
4. The transgenic plant cell of Claim 1, wherein the TFSRP coding nucleic acid hybridizes under stringent conditions to a sequence of SEQ ID N0:9, SEQ ID
NO:10, SEQ ID NO:11, SEQ ID N0:12, SEQ ID N0:13, SEQ ID N0:14, SEQ ID NO:15 or SEQ ID N0:16.
5. The transgenic plant cell of Claim 1, wherein the environmental stress is selected from the group consisting of salinity, drought and temperature.
6. The transgenic plant cell of Claim 1, wherein the plant is a monocot.
7. The transgenic plant cell of Claim 1, wherein the plant is a dicot.
8. The transgenic plant cell of Claim 1, wherein the plant is selected from the group consisting of maize, wheat, rye, oat, triticale, rice, barley, soybean, peanut, cotton, rapeseed, canola, manihot, pepper, sunflower, tagetes, solanaceous plants, potato, tobacco, eggplant, tomato, Vicia species, pea, alfalfa, coffee, cacao, tea, Salix species, oil palm, coconut, perennial grass and forage crops.
9. A transgenic plant comprising a plant cell according to any of Claims 1-8.
10. A seed produced by a transgenic plant comprising a plant cell according to any of Claims 1-8, wherein the seed is true breeding for an increased tolerance to environmental stress as compared to a wild type variety of the plant cell.
11. An agricultural product produced by the transgenic plant or seed of Claims 9 or 10.
12. An isolated Transcription Factor Stress-Related Protein (TFSRP) selected from the group consisting of: 1) a AP2 Similar-2 protein (APS-2); 2) a Zinc-Finger Factor-2 protein (ZF-2); 3) a Zinc-Finger Factor-3 protein (ZF-3); 4) a Zinc-Finger Factor-4 protein (ZF-4); 5) a Zinc-Finger Factor-5 protein (ZF-5); 6) a MYB-1 protein (MYB-1); 7) a CART-Box Binding Factor protein-3 (CABF-3); 8) a Sigma Factor Like protein (SFL-1); and orthologs thereof.
13. The isolated TFSRP of Claim 12, wherein the TFSRP is selected from the group consisting of: 1) APS-2 as defined in SEQ ID N0:17; 2) ZF-2 as defined in SEQ
ID
N0:18; 3) ZF-3 as defined in SEQ ID N0:19; 4) ZF-4 as defined in SEQ ID N0:20;
5) ZF-5 as defined in SEQ ID N0:21; 6) MYB-1 as defined in SEQ ID N0:22; 7) CABF-3 as defined in SEQ ID N0:23 and 8) SFL-1 as defined in SEQ ID N0:24.
14. An isolated Transcription Factor Stress-Related Protein (TFSRP) coding nucleic acid, wherein the TFSRP coding nucleic acid codes for a TFSRP selected from the group consisting of: 1) a AP2 Similar-2 protein (APS-2); 2) a Zinc-Finger Factor-2 protein (ZF-2); 3) a Zinc-Finger Factor-3 protein (ZF-3); 4) a Zinc-Finger Factor-4 protein (ZF-4); 5) a Zinc-Finger Factor-5 protein (ZF-5); 6) a MYB-1 protein (MYB-1);
7) a CART-Box Binding Factor protein-3 (CABF-3); 8) a Sigma Factor Like protein (SFL-1); and orthologs thereof.
15. The TFSRP coding nucleic acid of Claim 14, wherein the TFSRP coding nucleic acid selected from the group consisting of 1) APS-2 as defined in SEQ ID N0:9; 2) as defined in SEQ ID NO:10; 3) ZF-3 as defined in SEQ ID NO:11; 4) ZF-4 as defined in SEQ ID N0:12; 5) ZF-5 as defined in SEQ ID N0:13; 6) MYB-1 as defined in SEQ ID N0:14; 7) CABF-3 as defined in SEQ ID NO:15 and 8) SFL-1 as defined in SEQ ID N0:16.
16. An isolated recombinant expression vector comprising a nucleic acid of Claims 14 or 15, wherein expression of the vector in a host cell results in increased tolerance to environmental stress as compared to a wild type variety of the host cell.
17. A method of producing a transgenic plant containing a Transcription Factor Stress-Related Protein (TFSRP) coding nucleic acid, wherein expression of the nucleic acid in the plant results in increased tolerance to environmental stress as compared to a wild type variety of the plant, comprising, transforming a plant cell with an expression vector comprising the nucleic acid, generating from the plant cell a transgenic plant with an increased tolerance to environmental stress as compared to a wild type variety of the plant, wherein the TFSRP is selected from the group consisting of 1) a AP2 Similar-2 protein (APS-2); 2) a Zinc-Finger Factor-2 protein (ZF-2); 3) a Zinc-Finger Factor-3 protein (ZF-3); 4) a Zinc-Finger Factor-4 protein (ZF-4); 5) a Zinc-Finger Factor-5 protein (ZF-5); 6) a MYB-1 protein (MYB-1);
7) a CART-Box Binding Factor protein-3 (CABF-3); 8) a Sigma Factor Like protein (SFL-1); and orthologs thereof.
18. The method of Claim 17, wherein the TFSRP is selected from the group consisting of 1) APS-2 as defined in SEQ 1D N0:17; 2) ZF-2 as defined in SEQ 1D N0:18; 3) ZF-as defined in SEQ ID N0:19; 4) ZF-4 as defined in SEQ ID N0:20; 5) ZF-5 as defined in SEQ ID N0:21; 6) MYB-1 as defined in SEQ ID N0:22; 7) CABF-3 as defined in SEQ ID N0:23 and 8) SFL-1 as defined in SEQ ID N0:24.
19. The method of Claim 17, wherein the TFSRP coding nucleic acid is selected from the group consisting of 1) APS-2 as defined in SEQ ID N0:9; 2) ZF-2 as defined in SEQ
ID NO:10; 3) ZF-3 as defined in SEQ ID NO:11; 4) ZF-4 as defined in SEQ ID
N0:12; 5) ZF-S as defined in SEQ ID N0:13; 6) MYB-1 as defined in SEQ ID
N0:14; 7) CABF-3 as defined in SEQ ID NO:15 and 8) SFL-1 as defined in SEQ ID
N0:16.
20. The method of Claim 17, wherein the TFSRP coding nucleic acid hybridizes under stringent conditions to a sequence of SEQ ID N0:9, SEQ ID NO:10, SEQ ID NO:11, SEQ ID N0:12, SEQ ID N0:13, SEQ ID N0:14, SEQ ID NO:15 or SEQ ID N0:16.
21. A method of modifying stress tolerance of a plant comprising, modifying the expression of a Transcription Factor Stress-Related Protein (TFSRP) in the plant, wherein the TFSRP is selected from the group consisting of 1) a AP2 Similar-2 protein (APS-2); 2) a Zinc-Finger Factor-2 protein (ZF-2); 3) a Zinc-Finger Factor-3 protein (ZF-3); 4) a Zinc-Finger Factor-4 protein (ZF-4); 5) a Zinc-Finger Factor-5 protein (ZF-5); 6) a MYB-1 protein (MYB-1); 7) a CART-Box Binding Factor protein-3 (CABF-3); 8) a Sigma Factor Like protein (SFL-1); and orthologs thereof.
22. The method of Claim 21, wherein the TFSRP is selected from the group consisting of 1) APS-2 as defined in SEQ ID N0:17; 2) ZF-2 as defined in SEQ ID N0:18; 3) ZF-as defined in SEQ ID N0:19; 4) ZF-4 as defined in SEQ ID N0:20; 5) ZF-5 as defined in SEQ ID N0:21; 6) MYB-1 as defined in SEQ ID N0:22; 7) CABF-3 as defined in SEQ ID N0:23 and 8) SFL-1 as defined in SEQ ID N0:24.
23. The method of Claim 21, wherein the TFSRP coding nucleic acid is selected from the group consisting of 1) APS-2 as defined in SEQ ID N0:9; 2) ZF-2 as defined in SEQ
ID NO:10; 3) ZF-3 as defined in SEQ ID NO:11; 4) ZF-4 as defined in SEQ B7 N0:12; S) ZF-5 as defined in SEQ ID N0:13; 6) MYB-1 as defined in SEQ ID
N0:14; 7) CABF-3 as defined in SEQ ID NO:15 and 8) SFL-1 as defined in SEQ ID
N0:16.
24. The method of Claim 21, wherein the TFSRP coding nucleic acid hybridizes under stringent conditions to a sequence of SEQ ID N0:9, SEQ ID NO:10, SEQ ID NO:11, SEQ ID N0:12, SEQ ID N0:13, SEQ ID N0:14, SEQ ID NO:15 or SEQ ID N0:16.
25. The method of Claim 21, wherein the stress tolerance is increased.
26. The method of Claim 21, wherein the stress tolerance is decreased.
27. The method of Claim 21, wherein the plant is not transgenic.
28. The method of Claim 21, wherein the plant is transgenic.
29. The method of Claim 28, wherein the plant is transformed with a promoter that directs expression of the TFSRP.
30. The method of Claim 29, wherein the promoter is tissue specific.
31. The method of Claim 29, wherein the promoter is developmentally regulated.
32. The method of Claim 21, wherein TFSRP expression is modified by administration of an antisense molecule that inhibits expression of TFSRP.
CA2405721A 2000-04-07 2001-04-06 Transcription factor stress-related proteins and methods of use in plants Expired - Fee Related CA2405721C (en)

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US19600100P 2000-04-07 2000-04-07
US60/196,001 2000-04-07
PCT/US2001/011393 WO2001077311A2 (en) 2000-04-07 2001-04-06 Transcription factor stress-related proteins and methods of use in plants

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CA2405721C CA2405721C (en) 2012-06-19

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CA2767275A Abandoned CA2767275A1 (en) 2000-04-07 2001-04-06 Cell cycle stress-related proteins and methods of use in plants
CA2405703A Expired - Fee Related CA2405703C (en) 2000-04-07 2001-04-06 Cell cycle stress-related proteins and methods of use in plants
CA2767270A Abandoned CA2767270A1 (en) 2000-04-07 2001-04-06 Phosphatase stress-related proteins and methods of use in plants
CA2404857A Expired - Fee Related CA2404857C (en) 2000-04-07 2001-04-06 Signal transduction stress-related proteins and methods of use in plants
CA2789254A Abandoned CA2789254A1 (en) 2000-04-07 2001-04-06 Signal transduction stress-related proteins and methods of use in plants
CA2405750A Expired - Fee Related CA2405750C (en) 2000-04-07 2001-04-06 Protein kinase stress-related proteins and methods of use in plants
CA2785943A Abandoned CA2785943A1 (en) 2000-04-07 2001-04-06 Protein kinase stress-related proteins and methods of use in plants
CA002405708A Abandoned CA2405708A1 (en) 2000-04-07 2001-04-06 Gtp binding stress-related proteins and methods of use in plants
CA2767239A Expired - Fee Related CA2767239C (en) 2000-04-07 2001-04-06 Transcription factor stress-related proteins and methods of use in plants
CA2405721A Expired - Fee Related CA2405721C (en) 2000-04-07 2001-04-06 Transcription factor stress-related proteins and methods of use in plants
CA2405697A Expired - Fee Related CA2405697C (en) 2000-04-07 2001-04-06 Phosphatase stress-related proteins and methods of use in plants

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CA2767275A Abandoned CA2767275A1 (en) 2000-04-07 2001-04-06 Cell cycle stress-related proteins and methods of use in plants
CA2405703A Expired - Fee Related CA2405703C (en) 2000-04-07 2001-04-06 Cell cycle stress-related proteins and methods of use in plants
CA2767270A Abandoned CA2767270A1 (en) 2000-04-07 2001-04-06 Phosphatase stress-related proteins and methods of use in plants
CA2404857A Expired - Fee Related CA2404857C (en) 2000-04-07 2001-04-06 Signal transduction stress-related proteins and methods of use in plants
CA2789254A Abandoned CA2789254A1 (en) 2000-04-07 2001-04-06 Signal transduction stress-related proteins and methods of use in plants
CA2405750A Expired - Fee Related CA2405750C (en) 2000-04-07 2001-04-06 Protein kinase stress-related proteins and methods of use in plants
CA2785943A Abandoned CA2785943A1 (en) 2000-04-07 2001-04-06 Protein kinase stress-related proteins and methods of use in plants
CA002405708A Abandoned CA2405708A1 (en) 2000-04-07 2001-04-06 Gtp binding stress-related proteins and methods of use in plants
CA2767239A Expired - Fee Related CA2767239C (en) 2000-04-07 2001-04-06 Transcription factor stress-related proteins and methods of use in plants

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CA2405697A Expired - Fee Related CA2405697C (en) 2000-04-07 2001-04-06 Phosphatase stress-related proteins and methods of use in plants

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US (37) US6867351B2 (en)
EP (18) EP1311693B1 (en)
AT (8) ATE348181T1 (en)
AU (6) AU2002243190A1 (en)
CA (11) CA2767275A1 (en)
DE (8) DE60126920T2 (en)
ES (7) ES2272461T3 (en)
WO (6) WO2001077311A2 (en)

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