US20090264487A1 - Hemiasterlin analogs - Google Patents

Hemiasterlin analogs Download PDF

Info

Publication number
US20090264487A1
US20090264487A1 US12/491,839 US49183909A US2009264487A1 US 20090264487 A1 US20090264487 A1 US 20090264487A1 US 49183909 A US49183909 A US 49183909A US 2009264487 A1 US2009264487 A1 US 2009264487A1
Authority
US
United States
Prior art keywords
compound
group
methyl
arr
mmol
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
US12/491,839
Inventor
Raymond Andersen
Edward Piers
James Nieman
John Coleman
Michel Roberge
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
University of British Columbia
Original Assignee
University of British Columbia
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by University of British Columbia filed Critical University of British Columbia
Priority to US12/491,839 priority Critical patent/US20090264487A1/en
Publication of US20090264487A1 publication Critical patent/US20090264487A1/en
Abandoned legal-status Critical Current

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/04Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing only normal peptide links
    • C07K5/06Dipeptides
    • C07K5/06008Dipeptides with the first amino acid being neutral
    • C07K5/06078Dipeptides with the first amino acid being neutral and aromatic or cycloaliphatic
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K5/00Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
    • C07K5/02Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing at least one abnormal peptide link
    • C07K5/0205Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing at least one abnormal peptide link containing the structure -NH-(X)3-C(=0)-, e.g. statine or derivatives thereof
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07CACYCLIC OR CARBOCYCLIC COMPOUNDS
    • C07C271/00Derivatives of carbamic acids, i.e. compounds containing any of the groups, the nitrogen atom not being part of nitro or nitroso groups
    • C07C271/06Esters of carbamic acids
    • C07C271/08Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms
    • C07C271/10Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms
    • C07C271/22Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by carboxyl groups
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02PCLIMATE CHANGE MITIGATION TECHNOLOGIES IN THE PRODUCTION OR PROCESSING OF GOODS
    • Y02P20/00Technologies relating to chemical industry
    • Y02P20/50Improvements relating to the production of bulk chemicals
    • Y02P20/55Design of synthesis routes, e.g. reducing the use of auxiliary or protecting groups

Landscapes

  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Veterinary Medicine (AREA)
  • Public Health (AREA)
  • Animal Behavior & Ethology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • General Chemical & Material Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Peptides Or Proteins (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
  • Junction Field-Effect Transistors (AREA)
  • Organic Low-Molecular-Weight Compounds And Preparation Thereof (AREA)
  • Medicines Containing Material From Animals Or Micro-Organisms (AREA)
  • Acyclic And Carbocyclic Compounds In Medicinal Compositions (AREA)
  • Pyrrole Compounds (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
  • Amplifiers (AREA)
  • Steroid Compounds (AREA)

Abstract

This invention provides analogs of hemiasterlin, methods of synthesis of the analogs and use of the analogs as a cytotoxic anti-mitotic agents.

Description

    FIELD OF INVENTION
  • This invention relates to biologically active compounds and compositions, their use and derivation.
  • BACKGROUND
  • As described in Talpir, R. et al. (1994) Tetrahedron Lett. 35:4453-6 and in international patent application PCT/GB96/00942 published Oct. 24, 1996 under number WO96/33211, the compound hemiasterlin may be obtained from marine sponges or synthesized. As set forth in PCT/GB96/00942, hemiasterlin and the synthetic analogs described therein are cytotoxic and anti-mitotic.
  • Compounds that differ from hemiasterlin in the region of the indole moiety of hemiasterlin are novel. It has now been found that analogs of hemiasterlin wherein the indole moiety of hemiasterlin has been deleted or replaced demonstrate potent anti-mitotic and cytotoxic activity.
  • SUMMARY OF INVENTION
  • This invention provides a compound or pharmaceutically acceptable salt thereof, having the formula
  • Figure US20090264487A1-20091022-C00001
  • wherein,
  • R1 and R2 are independently selected from the group consisting of: H, R, and ArR—, and where at least one of R1 and R2 is R and neither are ArR—, R1 and R2 together may optionally be a three to seven membered ring;
  • R3 and R4 are independently selected from the group consisting of: H, R, ArR—, and where at least one of R3 and R4 is R and neither are ArR— or Ar, R3 and R4 together may optionally be a three to seven membered ring;
  • R5 is selected from the group consisting of: H, R, ArR—, and Ar;
  • R6 is selected from the group consisting of: H, R, and ArR—;
  • R7 and R8 are independently selected from the group consisting of: H, R, and ArR—; and
  • R9 is:
  • Figure US20090264487A1-20091022-C00002
  • and wherein,
  • R is defined as a saturated or unsaturated moiety having a linear, branched, or cyclic skeleton containing one to ten carbon atoms, zero to four nitrogen atoms, zero to four oxygen atoms, and zero to four sulfur atoms, and the carbon atoms are optionally substituted with: ═O, ═S, OH, —OR10, —O2CR10, —SH, —SR10, —SOCR10, —NH2, —NHR10, —N(R10)2, —NHCOR10, —NR10COR10, —I, Br, —Cl, —F, —CN, —CO2H, —CO2R10, —CHO, —COR10, —CONH2, —CONHR10, —CON(R10)2, —COSH, —COSR10, —NO2, —SO3H, —SOR10, —SO2R10, wherein R10 is a linear, branched or cyclic, one to ten carbon saturated or unsaturated alkyl group;
  • X is defined as a moiety selected from the group consisting of: —OH, —OR, ═O, ═S, —O2CR, —SH, —SR, —SOCR, —NH2, —NHR, —N(R)2, —NHCOR, —NRCOR, —I, —Br, —Cl, —F, —CN, —CO2H, —CO2R, —CHO, —COR, —CONH2, —CONHR, —CON(R)2, —COSH, —COSR, —NO2, —SO3H, —SOR, and —SO2R;
  • Ar is defined as an aromatic ring selected from the group consisting of: phenyl, naphthyl, anthracyl, phenanthryl, furyl, pyrrolyl, thiophenyl, benzofuryl, benzothiophenyl, quinolyl, isoquinolyl, imidazolyl, thiazolyl, oxazolyl, and pyridyl, optionally substituted with R or X;
  • Y is defined as a moiety selected from the group consisting of: a linear, saturated or unsaturated, one to six carbon alkyl group, optionally substituted with R, ArR—, or X; and,
  • Z is defined as a moiety selected from the group consisting of: —OH, —OR; —SH; —SR; —NH2; —NHR; —N(R)2; —NHCH(R11)COOH; and —NRCH(R11)COOH, wherein R11, is a moiety having the formula: R, or —(CH2)nNR12R13, wherein n=1-4 and R12 and R13 are independently selected from the group consisting of: H; R; and —C(NH)(NH2).
  • This invention also provide methods of preparing the aforementioned compound of formula I, and precursors thereof, as described herein.
  • This invention also provides the use of the aforementioned compound of formula I, or a pharmaceutically acceptable salt thereof, for:
  • (a) manufacture of a medicament;
  • (b) in a method whereby cells, including tumor cells, which are susceptible to the cytotoxic effects of the compound are treated with the compound or a pharmaceutically acceptable salt thereof; and
  • (c) in a method whereby cells are treated with the compound or a pharmaceutically acceptable salt thereof, to bring about mitotic arrest in the cells, or the production of abnormal mitotic spindles in the cells.
  • DESCRIPTION OF FIGURES
  • FIG. 1 is a schematic showing a preferred scheme for synthesis of a compound of this invention.
  • FIG. 2 is a schematic showing a preferred scheme for synthesis of the amino acid used in the coupling reaction shown in FIG. 1.
  • FIG. 3 is a schematic showing steps in the synthesis of a compound of this invention as described in the examples herein.
  • FIG. 4 is a schematic showing steps in the synthesis of the dipeptide shown in FIG. 3, as described in the examples herein.
  • FIGS. 5A and 5B are graphs comparing the cytoxicity of hemiasterlin to SPA-110, as described in the examples herein.
  • FIG. 6 is a graph comparing the anti-mitotic activity of SPA-110 (♦) to hemiasterlin (□), as described in the examples herein.
  • DETAILED DESCRIPTION OF THE INVENTION
  • Except where otherwise stated, the recitation of a compound herein covers all possible salts of the compound, and denotes all possible isomers possible within the structural formula given for such compound, including geometrical and optical isomers. Unless otherwise stated, materials described herein comprising a compound for which isomers exist, are to be regarded as covering individual isomers, and, mixtures of isomers including racemic mixtures.
  • In the compound of formula I set out above, bonds drawn in wavy line are from carbon atoms which may be optical centers. Preferably, the following absolute configurations predominate:
  • Figure US20090264487A1-20091022-C00003
  • Except where otherwise stated, any moiety referred to herein which is described as “alkyl” will preferably be straight chain or, branched when possible, and will preferably have up to eight, more preferably up to six and even more preferably up to four carbon atoms. Except where otherwise stated optionally substituted alkyl groups are preferably unsubstituted. Methyl is the most preferred alkyl group.
  • In this specification, reference is made to alkyl moieties being saturated or unsaturated, thereby including within the definition of the moiety, alkene and alkyne groups (whether internal, terminal or part of a ring).
  • In a compound of formula I, the following substituents alone, or in combination, are preferred:
      • (a) R1 and R2 independently: H, methyl, ethyl, propyl, n-butyl, acetyl; or, where R1 and R2 are joined: cyclopropyl, cyclobutyl, cyclopentyl or cyclohexyl; more preferably R1 and R2 are independently: H or CH3; most preferably R1 is H and R2 is CH3;
      • (b) preferably no more than one of R3 and R4 is H; more preferably, R3 and R4 are independently: methyl, ethyl, n-propyl or n-butyl, or, where R3 and R4 are joined: β-cyclopropyl, β-cyclobutyl, β-cyclopentyl or β-cyclohexyl; most preferably R3 and R4 are each methyl;
      • (c) R5: Ar in the definition of R5 is preferably phenyl, naphthyl, anthracyl or pyrrolyl; preferably R5 is phenyl, methyl or H; most preferably R5 is phenyl or methyl;
      • (d) R6 and R8 independently: H or methyl, more preferably R6 is H and R8 is methyl;
      • (e) R7: a three to six carbon, branched alkyl group; more preferably R7 is —C(CH3)3; and
      • (f) in R9, Z is preferably OH, —OR14 (wherein R14 is a linear or branched one to six carbon alkyl group, —NHCH(R)11)COOH or —NCH3CH(R11)COOH wherein R11, is R, or —(CH2)nNHC(NH)(NH2); or R9 is preferably —C—C═C(R16)
  • Figure US20090264487A1-20091022-C00004
        • wherein R15 is methyl, ethyl, n-propyl, isopropyl, tert-butyl, iso-butyl, or sec-butyl and R16 is H, methyl, ethyl, propyl, iso-propyl, n-butyl, iso-butyl or sec-butyl; more preferably Z is OH and R9, as a whole is:
  • Figure US20090264487A1-20091022-C00005
  • Where R9 has a chiral center in moiety Y, the following absolute configuration is preferred, with reference to an example where the chiral center has a methyl substituent:
  • Figure US20090264487A1-20091022-C00006
  • Compounds of formula I may be prepared by coupling moieties A, B and C as represented below using standard procedures, including procedures for coupling amino acids through a peptide bond.
  • Figure US20090264487A1-20091022-C00007
  • A coupling agent, for example PyBroP, is suitably used in the reaction. The reaction suitably comprises connecting amino acid moieties in the presence of the coupling agent, a base such as 4-dimethylaminopyridine and an organic solvent such as methylene chloride. Standard reaction quenching and purification procedures known in the art produce the coupled compound.
  • Preparation of moieties B and C as described above may be carried out using procedures and starting materials known in the art, for example by following the methods described in the aforementioned PCT/GB96/00942. The methods as set out in the examples herein may be employed, with suitable modification to materials and reagents, according to particular substituents of moieties A, B and C.
  • One aspect of this invention is a method for preparing a compound of formula I in which a compound of the formula:
  • Figure US20090264487A1-20091022-C00008
  • is coupled with a compound of the formula:
  • Figure US20090264487A1-20091022-C00009
  • A compound of formula III may be prepared by known methods (such as described in PCT/GB96/00942) and by the method described in the examples herein.
  • A further aspect of this invention is a method for preparing a compound of the formula II described above in which a compound of the formula:
  • Figure US20090264487A1-20091022-C00010
  • is treated with a base such as dilute sodium hydroxide in a solvent such as methanol for enough time to allow removal of OR; followed by acidification to about pH 3. Preferably R in formula IV is a simple alkyl chain, such as CH3, and a protecting agent such as tert-butoxycarbonyl(Boc) may be used to protect the amine group; i.e. R1 or R2 is replaced by Boc. The Boc group is suitably removed by a reaction such as TFA/CH2Cl2 for about 1 hour at ambient temperatures. An appropriate isolation protocol produces the TFA salt. Subsequently another group (eg. R1 or R2) could be introduced on the nitrogen by standard techniques known to any person in the art, which produces compound of formula IV.
  • A further aspect of this invention is a method for preparing a compound of formula IV described above in which a compound of the formula:
  • Figure US20090264487A1-20091022-C00011
  • is coupled with a compound of the formula:
  • Figure US20090264487A1-20091022-C00012
  • Preparation of compound V can be accomplished by many procedures known to person skilled in the art. One such example is described below in FIG. 2. Compounds of formula VI may be prepared by methods known to persons of skill in the art.
  • A preferred method according to this invention for preparing a compound of formula I, is to prepare a dipeptide comprising moieties B and C and couple the dipeptide to moiety A. In this method, a compound of the following formula, wherein Q and T together are a combination of any two of the substituents: R1, R2 and a protecting group:
  • Figure US20090264487A1-20091022-C00013
  • is coupled with a compound of the formula:
  • Figure US20090264487A1-20091022-C00014
  • A compound of formula VIII may be prepared by coupling a compound of formula III as described above, with a compound of the formula:
  • Figure US20090264487A1-20091022-C00015
  • Compounds of formula IX may be prepared by methods known to persons of skill in the art.
  • A further aspect of this invention is a method to prepare a compound of formula VII as described above in which a compound of the formula:
  • Figure US20090264487A1-20091022-C00016
  • is treated with a base followed by an azide compound. The azide derivative so produced is reduced to form an amine which is then treated with groups selected from: R1, R1 and Boc in the presence of a base such as sodium hydride.
  • FIG. 1 sets out a preferred scheme for preparation of a compound of formula I involving the coupling of amino acid moiety A with a dipeptide comprising moieties B and C. In the embodiment shown in the figure, the substituents of the dipeptide are those of hemiasterlin. The Boc protected dipeptide portrayed in the figure may be obtained by the methods set out in the examples herein. On the A moiety, Boc may replace R1 rather than R2 or both R1 and R2 may be present on the A moiety prior to coupling.
  • FIG. 2 sets out a preferred scheme for preparation of moiety A as used in the scheme shown in FIG. 1. R2 may be added in place of Boc and Boc may replace R1.
  • Compounds of formula I are biologically active. The invention includes the use of a compound of formula I. Compounds of formula I may have pesticidal, for example insecticidal activity. Preferably, however, the use is in the pharmaceutical field for medical or veterinarial applications.
  • The compounds described herein have utility as cytotoxic agents, particularly against tumor cells and may have utility as anti-bacterial or anti-viral agents. Therefore, this invention includes a pharmaceutical composition comprising an effective amount of a compound of formula I, in association with a carrier.
  • This invention further provides the use of a compound of formula I for the manufacture of a medicament for use in the treatment of cancer or a tumor in a mammal.
  • In using a compound of formula I for medical or veterinarial applications, the compound is preferably administered in a pharmaceutical composition comprising also a pharmaceutically acceptable carrier, and optionally, one or more other biologically active ingredients. Such compositions may be in any form used for administering pharmaceuticals, for example any form suitable for oral, topical, vaginal, intravenous, subcutaneous, parenteral, rectal and inhalatory application. The compositions may be provided in discrete dose units. The carriers may be particulate, with the compositions being, for example, tablets or powders, or liquid, with the compositions being, for example, oral syrups or injectable liquids, or aerosol, for inhalatory application.
  • For oral administration an excipient and/or binder may be present. Examples are sucrose, kaolin, glycerin, starch dextrins, sodium alginate, carbosymethylcellulose and ethyl cellulose. Colouring and/or flavouring agents may be present. A coating shell may be employed. For rectal administration oleaginous bases may be employed, for example lanolin or cocoa butter. For an injectable formulation buffers, stabilizers and isotonic agents may be included.
  • The dosage of a compound of formula I may depend upon the weight and physical condition of the patient; on the severity and longevity of the illness; and on the particular form of the active ingredient, the manner of administration and the composition employed. A daily dose of about 0.0001 to about 100 mg/kg of body weight taken singly or in separate doses of up to 6 times a day, or by a continuous infusion, embraces the effective amounts most typically required. A preferred range is about 0.001 to about 50 mg/kg of body weight, per day, most preferably about 0.01 to about 30 mg/kg of body weight, per day.
  • It is to be understood that use of a compound of formula I in chemotherapy can involve such a compound being bound to an agent, for example a monoclonal or polyclonal antibody, a protein or a liposome, which assists the delivery of the said compound to tumor cells.
  • This invention also includes the use of a compound of formula I as an antimitotic agent. Such use may be in procedures that require blocking cells in mitosis, such as the preparation of mitotic spreads for karyotype analysis.
  • The compounds of this invention can also be used to probe microtubule function in mitotic cells.
  • EXAMPLES
  • The following examples provide a detailed description of preferred methods of synthesis of a preferred compound of this invention, SPA-110. Also described are precursor compounds and characterization of various compounds of this invention. FIGS. 3 and 4 schematically portray the synthesis of the a SPA-110 salt according to the examples. Reference numerals in the examples correspond to labelling of compounds in FIGS. 3 and 4 and labelling of compounds depicted in the examples.
  • 3-methyl-3-phenylbutanoic acid (2)
  • Figure US20090264487A1-20091022-C00017
  • 3-Methyl-2-butenoic acid (1, 5.10 g, 50.9 mmol) and AlCl3 (20.4 g, 153 mmol) were placed in a one-neck round-bottomed flask. Benzene (50 mL) was added, which produced vigorous bubbling. Upon completion of the bubbling, a capped condenser (i.e. closed system) was attached, the reaction mixture was stirred and placed in an oil bath at 65° C. The pressure in the system was occasionally released. The progress of the reaction was followed by following the loss of starting material by GC. If the reation was not complete within 1 h, a small quantity of AlCl3 was added and stirring was continued. To the solution was added diethyl ether and the mixture was cooled to 0° C. Slowly conc. HCl and some water were added until all the solid dissolved and the pH was less than 2. The aqueous layer was extracted with diethyl ether three times. The organic layer was concentrated to 150 mL and then was extracted with a saturated sodium hydrogen carbonate solution six times. The combined aqueous layer were acidified with conc. HCl until the pH was less than 2. The acidic aqueous layer was extracted with diethyl ether three times and the accumulated organic layer was dried with magnesium sulfate. The solution was filtered and the diethyl ether was removed in vacuo producing a white solid (8.51 g, 47.7 mmol) in 94% yield, which did not need further purification. mp 55-56° C. 1H-NMR (400 MHz, CDCl3) 10.45 (bs, 1H, CO2H), 7.38 (d, 2H, J=7.2 Hz, H-11 and H-7), 7.32 (t, 2H, J=7.2 Hz, H-10 and H-8), 7.21 (t, 2H, J=7.2 Hz, H-9), 2.65 (s, 2H, H-2), 1.47 (s, 6H, H-5 and H-4); Mass spectrum (EI) 178 (23, M+), 119 (100, [C9H11]+). For pioneering work to form 2 see: F. J. Eijkman (1908) Chem. Kentr. II, p. 110; or A. Hoffman (1929) J. Am. Chem. Soc. 51:2542.
  • (4S)-3-(3-methyl-3-phenyl-1-oxobutyl)-4-isopropyl-2-oxazolidinone (3)
  • Figure US20090264487A1-20091022-C00018
  • 3-Methyl-3-phenylbutanoic acid (2, 1.00 g, 5.61 mmol) was dissolved in 70 mL of THF and cooled to −78° C. Triethylamine (1.17 mL, 8.42 mmol) and trimethylacetyl chloride (0.760 mL, 6.17 mmol) were added to the reaction flask producing a white solid. The resulting mixture was warmed to 0° C. for 1 h and then cooled back down to −78° C. In a second flask butyllithium (6.84 mL, 1.6 M in hexanes, 10.9 mmol) was added dropwise with vigorous stirring to a solution of (4S)-(−)-4-isopropyl-2-oxazolidinone (1.45 g, 11.2 mmol) at −78° C. in THF (60 mL) producing a white precipitate. The resulting suspension of the lithiated oxazolidinone was added via cannula to the reaction flask. Stirring was continued for 2 h, water was added and the reaction mixture was warmed to room temperature, whereupon it was extracted three times with diethyl ether. The combined organic extracts were dried over magnesium sulfate, and concentrated in vacuo. The product was purified by radial chromatography (4 mm plate, 3:7 diethyl ether-pet. ether) affording compound 3 as a clear, colourless oil in 84% yield (1.37 g, 4.74 mmol). 1H-NMR (400 MHz, CDCl3) 7.38 (d, 2H, J=7.3 Hz, H-19 and H-15) 7.28 (t, 2H, J=7.3 Hz, H-18 and H-16), 7.16 (t, 1H, J=7.3 Hz, H-17), 4.22-4.18 (m, 1H, H-4), 4.05 (dd, 1H, J=9.0 and 2.8 Hz, 1H-5), 4.00 (t, 1H, J=9.0 Hz, 1H-5), 3.38-3.30 (m, 2H, H-10), 2.16-2.12 (m, 1H, H-6), 1.48 (s, 3H, H-13 or H-12), 1.47 (s, 3H, H-13 or H-12), 0.79 (d, 3H, J=7.1 Hz, H-8 or H-7), 0.71 (d, 3H, J=6.9 Hz, H-8 or H-7); Mass spectrum (EI) 289 (8, M.+), 119 (100, [C9H11]+). Optical rotation obtained was [α]D 25+69.5 (c 1.16, CHCl3). Compound 3 was prepared according to D. A. Evans et al. (1988) Tetrahedron 44:5525.
  • Preparation of the 4-isopropyl-2-oxazolidione 4
  • Figure US20090264487A1-20091022-C00019
  • Oxazolidinone 3 (472 mg, 1.63 mmol), dried under high vacuum for 0.5 h, was dissolved in THF and cooled to −78° C. (10 mL). Freshly titrated potassium bis(trimethylsilyl)amide (15.6 mL, 0.115 M in THF, 1.79 mmol) was added and the resulting solution was stirred at −78° C. for 1 h. A solution of 2,4,6-triisopropylbenzenesulfonyl azide (625 mg, 2.04 mmol) in THF (5 mL) at −78° C. was added via cannula and after 2 min. the orange coloured reaction mixture was treated with glacial acetic acid (0.429 mL, 7.50 mmol), warmed to 40° C. in a water bath and stirred for a further hour. To the light yellow mixture was added brine (35 mL), water (35 mL) and the aqueous phase was extracted three times with 80 mL diethyl ether. The combined organic extracts were washed with a saturated sodium hydrogen carbonate solution (20 mL), dried with magnesium sulfate and concentrated in vacuo. The product was purified by radial chromatography (4 mm plate, 3:7 diethyl ether-pet. ether, sample was loaded with diethyl ether) affording azide 5 as a colourless oil (482 mg, 1.46 mmol) in 89% yield. 1H-NMR (400 MHz, CDCl3) 7.39 (d, 2H, J=7.2 Hz, H-19 and H-15), 7.31 (t, 2H, J=7.2 Hz, H-18 and H-16), 7.23 (t, 1H, J=7.2 Hz, H-17), 5.64 (s, 1H, H-10), 3.95 (dd, 1H, J=8.7 and 2.2 Hz, 1H-5), 3.89-3.85 (m, 1H, H-4), 3.56 (t, 1H, J=8.7 Hz, 1H-5), 2.31-2.26 (m, 1H, H-6), 1.54, 1.52 (s, 3H, H-13 and H-12), 0.83 (d, 3H, J=7.0 Hz, H-8 or H-7), 0.79 (d, 3H, J=6.9 Hz, H-8 or H-7); Mass spectrum (DCI, NH3) 349 (45, [M+NH5]+), 348 (100, [M+NH4]+), 331 (12, [M+H]+), 303 (57, [M-N2]+), 119 (94, [C9H11]+). Optical rotation obtained was [α]D 25+121.5 (c 1.1, CHCl3). Compound 4 was prepared according to the methodology developed by D. A. Evans et al. (1990) J. Am. Chem. Soc. 112:4011. 2,4,6-Triisopropylbenzenesulfonyl azide was prepared by the method of O. C. Dermer et al. (1955) J. Am. Chem. Soc. 77:70.
  • Preparation of the 4-isopropyl-2-oxazolidinone 5
  • Figure US20090264487A1-20091022-C00020
  • Azide 4 (418 mg, 1.26 mmol), 10% palladium on charcoal (280 mg), and di-tert-butyl dicarbonate (608 mg, 2.78 mmol) were placed in a 100 mL flask. Ethyl acetate (37 mL) was added and the resulting black suspension was stirred at room temperature. The mixture was flushed with argon, then with hydrogen and was stirred under a hydrogen balloon overnight (˜14 h). The reaction mixture was filtered through silica gel and the collected material was washed with ethyl acetate. The combined filtrate was concentrated in vacuo and the crude mixture was purified by flash column chromatography (3:7 diethyl ether-pet. ether) to afford compound 5, a viscous colourless oil, in 78% yield (400 mg, 0.989 mmol). 1H-NMR (400 MHz, CDCl3) 7.40 (d, 2H, J=7.4 Hz, H-19 and H-15), 7.29 (t, 2H, J=7.4 Hz, H-18 and H-16), 7.21 (t, 1H, J=7.4 Hz, H-17), 6.12 (d, 1H, J=9.9 Hz, H-10), 5.11 (bs, 1H, N—H), 3.89 (d, 1H, J=8.4 and 1.9 Hz, H-5), 3.82-3.79 (m, 1H, H-4), 3.45 (t, 1H, J=8.4 Hz, H-5), 2.26-2.22 (m, 1H, H-6), 1.41 (s, 9H, H-24, H-23 and H-22), 0.80 (d, 3H, J=7.0 Hz, H-8 or H-7), 0.76 (d, 3H, J=6.9 Hz, H-8 or H-7); Mass spectrum (DCI, CH4/NH3 mix) 405 (1, [M+H]+), 349 (7, [M-C4H9]+), 230 (100, [C9H14N2O5]+). Optical rotation obtained was [α]D 24+118.4 (c 0.935, CHCl3). Compound 5 was prepared according to the methodology developed by D. A. Evans et al. (1990) [supra].
  • Methyl (2S)-2-(tert-butyloxycarbonyl)amino-3-methyl-3-phenylbutanoate (6)
  • Figure US20090264487A1-20091022-C00021
  • Oxazolidinone 5 (245 mg, 0.65 mmol) was dissolved in a mixture of 7.1 mL THF and 1.8 mL water. This solution was cooled to 0° C. and hydrogen peroxide (0.618 mL, 30% aqueous, 5.45 mmol) and lithium hydroxide (1.82 mL, 1.0 M, 1.82 mmol) were added. The resulting mixture was stirred at room temperature overnight (˜15 h). The excess peroxide was quenched by addition of sodium hydrogen sulfite (7.1 mL, 1.5 M, 10.7 mmol) and stirring was continued for 1 h. The aqueous phase was acidified with 1.0 M citric acid and the mixture was extracted three times with ethyl acetate. The combined ethyl acetate extracts were dried over magnesium sulfate and concentrated in vacuo. To the remaining crude material was added a solution of diazomethane in diethyl ether until the solution stayed yellow. After bubbling argon through the solution for 15 min., the remaining volatile components were removed in vacuo to afford crude compound 6. Purification of ester 6 was accomplished by radial chromatography (2 mm plate, 37 diethyl ether-pet. ether, sample was loaded with CHCl3), producing a clear colourless oil (171 mg, 0.555) in 92% yield. 1H-NMR (400 MHz, CDCl3) 7.33-7.27 (m, 4H, H-16, H-15, H-13, H-12), 7.20 (t, 1H, J=6.7 Hz, H-14), 4.99 (bd, 1H, J=8.8 Hz, H-2), 4.50 (bd, 1H, J=8.8 Hz, N—H), 3.48 (s, 3H, H-17), 1.41, 1.38 (s, 3H, H-5 and H-4), 1.37 (s, 9H, H-10, H-9, and H-8); Mass spectrum (EI) 307 (0.1, M.+), 234 (2, [M-Ot-Bu]+), 119 (100, [C9H11]+). Optical rotation obtained was [α]D 25+35.2 (c 2.98, CHCl3). Compound 5 was prepared according to the methodology developed by D. A. Evans et al. (1990) [supra].
  • (2S)—N-tert-butoxycarbonyl-N-methyl-3-methyl-3-phenylbutanoic acid (7)
  • Figure US20090264487A1-20091022-C00022
  • To a vigorously stirred solution of ester 6 (43.4 mg, 0.141 mmol) in 2 mL dry DMF were added sodium hydride (10.2 mg, 4.24 mmol) followed by methyl iodide (0.088 mL, 1.41 mmol) and the resulting grey suspension was stirred overnight (˜20 h) at room temperature. The excess sodium hydride was quenched by cautious addition of water and the mixture was acidified by dropwise addition of 1.0 M citric acid. The acidic mixture was extracted three times with ethyl acetate, the combined organic layer extracted three times with brine, dried over magnesium sulfate and concentrated in vacuo. The resulting light orange oil was dissolved in 4 mL methanol in a 25 mL flask. To the solution was added 1.0 mL of water, followed by 1.13 mL of 1.0 M lithium hydroxide. The reaction mixture was heated at 60° C. overnight (˜14 h), producing a white precipitate. To the resultant mixture was added saturated sodium hydrogen carbonate solution and water; the mixture was then extracted with ethyl acetate. The aqueous layer was acidified with 1.0 M citric acid until the pH was ˜4. The mixture was extracted three times with ethyl acetate. The combined organic layers were dried with magnesium sulfate and concentrated in vacuo. Compound 7 was also found in the first ethyl acetate extraction so it was also added to the crude product. Purification of acid 7 was performed by silica gel column chromatography (1:2 diethyl ether-pet. ether with 1% acetic acid) resulting in a 49% yield (21.2 mg, 0.0670 mmol) of a clear colourless oil. 1H-NMR (400 MHz, CDCl3) 7.41 (d, 1.3H, J=7.6 Hz, H-17 and H-13), 7.37 (d, 1.3H, J=7.6 Hz, H-17 and H-13), 7.28 (t, 2H, J=7.6 Hz, H-16 and H-14), 7.18 (t, 1H, J 7.2 Hz, H-15), 5.17 (bs, 0.66H, H-2), 4.93 (bs, 0.33H, H-2), 2.75 (s, 1.05H, H-6), 2.62 (s, 1.95H, H-6), 1.55 (s, 3H, H-5 or H-4), 1.49-1.39 (m, 12H, H-5 or H-4 and H-11, H-10 and H-9); Mass spectrum (EI) 307 (0.1, M.+), 234 (3, [M-Ot-Bu]+), 119 (100, [C9H11]+), 57 (78, [C4H9]+); Exact mass calc d for C17H25NO4: 307.1783. Found (EI): 307.1793.
  • Preparation of Compound 9
  • Figure US20090264487A1-20091022-C00023
  • The N-Boc-amino ester 8 (71.6 mg, 0.174 mmol) was dissolved in 1 mL CH2Cl2 and 1 mL of TFA was added. The reaction mixture was stirred at room temperature for 0.5 h. Removal of the solvent in vacuo, followed by repeated rinsing of the remaining material with CH2Cl2 (3×5 mL) and evaporation of the residual solvent afforded the TFA salt of the amino acid ester 8. In a separate flask, to a solution (or suspension) of the N-Boc protected amino acid 7 (51.5 mg, 0.167 mmol) in 0.5 mL CH2Cl2, was added DIEA (0.0875 mL, 0503 mmol), DMAP (0.031 mg, 0.10 mmol) and PyBroP (0.0781 mg, 0.167 mmol). The solution was stirred for a few minutes and then a solution of the TFA salt of 8 was added in 1 mL of CH2Cl2 via cannula addition. The reaction mixture was stirred at room temperature for 18 h. To the mixture was added water, CH2Cl2 and ten drops of 10% aqueous HCl. The resulting biphasic solution was extracted with CH2Cl2 (three times with 20 mL). The organic layer was extracted with saturated aqueous sodium hydrogen carbonate (10 mL), dried with magnesium sulfate and the solvent was removed in vacuo. The product was purified by flash chromatography (silica gel, 1:1 diethyl ether-pet. ether) affording the protected tripeptide 9 as a clear colourless oil in 27% yield (0.0272 g, 0.0454 mmol). 1H-NMR (400 MHz, CDCl3) 7.84 (bd, 1H, J=9.5 Hz, N—H), 7.4-7.30 (m, 5H, H-28, H-27, H-25, H-24), 7.21 (bt, 1H, J=7.2 Hz, H-26), 6.63 (bd, 1H, J=9.6 Hz, H-6), 5.08 (t, 1H, J=9.6 Hz, H-7), 4.83 (d, 1H, J=9.5 Hz, H-13), 4.17 (q, 2H, J=7.1 Hz, H-2), 3.02 (s, 3H, H-11), 2.15 (s, 0.66H, H-29), 2.02 (s, 2.37H, H-29), 1.94-1.81 (m, 1H, H-8), 1.88 (s, 3H, H-5), 1.39-1.38 (m, 9H, H-34, H-33 and H-32), 1.28 (t, 3H, J=7.1 Hz, H-1), 0.98 (s, 9H, H-17, H-16 and H-15), 0.83, 0.77 (d, 3H, J=6.6 Hz, H-10 and H-9); PyBroP is described in E. Frérot et al. (1991) Tetrahedron 47:259.
  • SPA110-trifluoroacetate salt (10)
  • Figure US20090264487A1-20091022-C00024
  • To a solution of the ethyl ester 9 (23.0 mg, 0.0382 mmol) in 1.1 mL MeOH was added 0.30 mL water and 0.31 mL of a 1.0 M aqueous solution of lithium hydroxide (0.31 mmol). The reaction mixture was stirred at room temperature overnight (˜20 h) whereupon it was acidified by dropwise addition of 1.0 M citric acid and then extracted three times with ethyl acetate. The combined organic extracts were dried with magnesium sulfate and concentrated in vacuo. Under an argon atmosphere, the crude oil was dissolved in 1 mL CH2Cl2 and the solution was treated with TFA (1 mL) and then was stirred at room temperature for 0.5 h. Removal of the excess solvents in vacuo, followed by rinsing of the remaining material three times with CH2Cl2 (5 mL) and evaporation of the residual solvent, produced the TFA salt. HPLC purification of the crude product using a Magnum reverse phase C-18 column (H2O(45): MeOH(55) with 0.05% TFA) afforded the tripeptide 10 as a white powder. 1H-NMR (400 MHz, CD3OD) 7.53 (d, 2H, J=7.6, H-25 and H-21), 7.44 (t, 2H, J=7.6 Hz, H-24 and H-22), 7.34 (t, 1H, J=7.6 Hz, H-23), 6.76 (d, 1H, J=9.1 Hz, H-4), 5.04 (t, 1H, J=10.1 Hz, H-5), 4.91, 4.34 (s, 1H, H-17 and H-11), 3.13 (s, 3H, H-9), 2.49 (H-26), 2.08-1.99 (m, 1H, H-6), 1.90 (s, 3H, H-3), 1.46, 1.37 (s, 3H, H-19 and H-18), 1.05 (s, 9H, H-15, H-14 and H-13), 0.89 (d, 3H, J=6.1 Hz, H-8 or H-7), 0.88 (d, 3H, J=6.5 Hz, H-8 or H-7); Mass spectrum (EI) 474 (0.1, [M-CF3CO2 ]+), 458 (0.1, [M-16-CF3CO2 ]+), 382 (2), 162 (62), 69 (74), 45 (100).
  • NαBoc-Nα-methyl-1-valine N-methoxy-N-methylamide (12)
  • Figure US20090264487A1-20091022-C00025
  • To a cold (0° C.) solution of N-Boc-N-methylvaline (11) (5.0 g, 21.6 mmol), N,O-dimethylhydroxylamine hydrochloride (2.8 g, 28 mmol), and PyBOP® (11.2 g, 22 mmol) in CH2Cl2 (22 mL) was added DIEA (8.4 mL, 75 mmol). After 1 min., the reaction mixture was warmed to room temperature and stirring was continued for 1 h. If the pH value of the mixture was less than 7, the mixture could be treated with a few drops DIEA to allow the reaction to go to completion. The mixture was poured into 200 mL of diethyl ether and the resultant mixture was washed successively with 3 N hydrochloric acid (3×30 mL), saturated aqueous sodium hydrogen carbonate solution (3×30 mL), and saturated aqueous sodium chloride (3×30 mL). The organic layer was dried with magnesium sulfate and the solvent was evaporated, followed by chromatography of the crude product (silica gel, 1:3 diethyl ether-pet. ether), afforded 12 (4.46 g, 75% yield) as a colourless oil. 1H-NMR (200 MHz, CDCl3): 0.84 (d, J=6.6 Hz, 4H, (CH3)2), 0.85 (d, J=6.6 Hz, 2H, (CH3)2), 1.41 (s, 6H, Boc-(CH3)3), 1.44 (s, 3H, Boc-(CH3)3), 2.15-2.30 (m, 1H, CH), 2.75 (s, 1H, NCH3), 2.78 (s, 2H, NCH3), 3.10 (bs, 3H, NCH3), 3.64 (s, 1H, OCH3), 3.68 (s, 2H, OCH3), 4.66 (d, J=10 Hz, 0.4H, CH), 4.95 (d, J=10 Hz, 0.6H, CH); Exact mass calc'd for C13H27N2O4 (M+H)+:275.19708. Found (DCI): 275.19710. Optical rotation obtained was [α]D 25: +128.3 (c 2.9, CHCl3).
  • N-Boc-N-methyl-1-valinal (13
  • Figure US20090264487A1-20091022-C00026
  • Lithium aluminum hydride (875 mg, 23 mmol) was added to a solution of Nα-Boc-Nα-methyl-L-valine N-methoxy-N-methylamide (12) (2.0 g, 7.7 mmol) in dry THF (8 mL) and the reaction mixture was stirred for 20 min. The mixture was poured into a stirring solution of potassium hydrogen sulfate (3.14 g, 23 mmol) in water (100 mL). Diethyl ether (75 mL) was added, the layers separated and the aqueous layer extracted with diethyl ether (3×50 mL). The organic layers were combined, and washed sequentially with 3 N hydrochloric acid (3×30 mL), saturated aqueous sodium hydrogen carbonate (3×30 mL), and saturated aqueous sodium chloride (3×30 mL). The organic layer was dried with magnesium sulfate and the solvent was evaporated to yield the crude aldehyde 13 (1.52 g, 92% yield). Aldehyde 13 was used without further purification. Note: 13 can be stored under argon for ˜2 weeks, but when stored in organic solvents at room temperature, undergoes slow decomposition. 1H-NMR (200 MHz, CDCl3) 0.73 (d, J=6.9 Hz, 3H, CH3), 0.91 (d, J=6.9 Hz, 3H, CH3), 1.27 (s, 9H, Boc-(CH3)3), 2.02-2.15 (m, 1H, CH), 2.63 (s, 2H, NCH3), 2.72 (s, 1H, NCH3), 3.44 (d, J=9.5 Hz, 0.5H, CH), 3.86 (d, J=9 Hz, 0.5H, CH), 9.45 (s, 1H, CH); Exact mass calc'd for C11H22NO3 (M+H)+: 216.15997; Found (DCI): 216.15996; Optical rotation obtained was [α]D 25-104.2 (c 5.5, CHCl3).
  • Ethyl (2E,4S)—N-Boc-N-methyl-4-amino-2.5-dimethylhex-2-enoate (14)
  • Figure US20090264487A1-20091022-C00027
  • To a solution of aldehyde 13 (1.75 g, 8.7 mmol) in dry CH2Cl2 (9.0 mL) under an argon atmosphere at room temperature was added (carbethoxyethylidene)triphenylphosphorane (4.19 g, 11.3 mmol) and stirring was continued for a 4 h. The reaction mixture was diluted with water (100 mL) and extracted with diethyl ether (3×100 mL). The combined organic extracts were washed with saturated aqueous sodium chloride (100 mL), dried with magnesium sulfate and concentrated in vacuo. The crude oil was purified by flash chromatography (silica gel, 2:23 diethyl ether-pet. ether) to afford the required E-2-alkenoate 14 as a colourless oil (2.13 g, 82% yield). 1H-NMR (200 MHz, CDCl3) 0.74 (d, J=6 Hz, 3H, CH3), 0.79 (d, J=6 Hz, 3H, CH3), 1.17 (t, J=7 Hz, 3H, CH3), 1.34 (s, 9H, Boc-(CH3)3), 1.72 (m, 1H, CH), 1.78 (s, 3H, CH3), 2.60 (bs, 3H, NCH3), 4.08 (q, J=7 Hz, 2H, CH2), 4.15-4.20 (m, 0.5H, CH), 4.21-4.32 (m, 0.5H, CH), 6.54 (d, J=8 Hz, 1H, CH); Exact mass calc'd for C16H30NO4 (M+H)+: 300.21750; Found (DCI): 300.21754. Optical rotation obtained was [α]D 25+61.1 (c 9.1, CHCl3).
  • General Procedure 1: Trifluoacetic Acid Medicated Cleavage of N-Boc Groups
  • N-Boc-amino acid ester (1.0 equiv.) was treated with TFA/CH2Cl2 (0.1 mmol/1 mL) at room temperature for 0.5 h. Removal of the solvent in vacuo, followed by repeated rinsing of the residual material with CH2Cl2 (3×5 mL) and evaporation of the remaining traces of solvent afforded the TFA salt of the amino acid ester in quantitative yield. TFA salts were used without further purification.
  • General Procedure 2: Trimethylacetyl Chloride Mediated Peptide Coupling
  • To a cold (−78 C) stirred solution of acid (1.1 equiv.) in dry THF (1 mL/mmol) under an argon atmosphere was added DIEA (1.5 equiv.) and trimethylacetyl chloride (1.2 equiv.). The resulting mixture was warmed to 0° C. for 1 h and then re-cooled to −78 C. DIEA (2.2 equiv.) was added via cannula to the reaction flask followed by the addition via cannula of the TFA salt of the amino acid ester (1.0 equiv., prepared by general procedure 1) in dry THF (0.5 mL/mmol) at −78 C. Stirring was continued for 1 h and water (40 mL) was added. The mixture was allowed to warm to room temperature, and extracted with diethyl ether (3×50 mL). The combined organic extracts were washed with saturated aqueous sodium chloride (50 mL), dried over magnesium sulfate, and concentrated in vacuo. The crude oil was purified by flash chromatography (silica gel, diethyl ether-pet. ether) to afford the desired dipeptide as a colourless oil.
  • Dipeptide 8
  • Figure US20090264487A1-20091022-C00028
  • Following general procedure 2, dipeptide 8 was prepared with the following quantities of reagents and solvents: N-Boc-tert-leucine (15), 156 mg (0.52 mmol); trimethylacetyl chloride, 64 mL (0.52 mmol); DIEA, 99 mL (0.57 mmol); N-Boc-MHVV-OEt (14), 110 mg (0.47 mmol); DIEA, 198 mL (1.14 mmol); THF, 7 mL. Purification of the crude product by flash chromatography (silica gel, 1:5 diethyl ether-pet. ether) afforded 121 mg of 8 (62% yield). 1H-NMR (200 MHz, CDCl3) 0.76 (d, J=6 Hz, 3H, CH3), 0.80 (d, J=6 Hz, 3H, CH3), 0.88 (s, 9H, (CH3)3), 1.22 (t, J=7 Hz, 3H, CH3), 1.33 (s, 9H, Boc-(CH3)3), 1.79-1.89 (m, 1H, CH), 1.83 (s, 3H, CH3), 2.91 (s, 3H, NCH3), 4.12 (q, J=7 Hz, 2H, CH2), 4.35 (d, J=10 Hz, 1H, CH), 5.03 (t, J=10 Hz, 1H, CH), 5.14 (d, J=10 Hz, 1H, NH), 6.57 (d, J=8 Hz, 1H, CH); Exact mass calc'd for C22H41N2O5 (M+H)+: 413.30154; Found (DCI): 413.30119. Optical rotation obtained was [α]D 25−76.9 (c 2.43, CHCl3).
  • Assay for Cytotoxicity
  • Cytotoxicity of SPA-110 compared to hemiasterlin as against p53+ and p53− variants of human breast cancer MCF-7 cells and A549 tumor cells was determined according to the methods described in J. Immunol. Methods 65:55-63 (1983). Results shown in FIGS. 5A and 5B show that SPA-110 is more cytotoxic in some instances than the naturally occurring compound.
  • Assay for Antimitotic Activity
  • Antimitotic activity is detected by enzyme-linked immunosorbent assay using a mitosis-specific antibody, TG-3 (from Albert Einstein College of Yeshiva University, Bronx, N.Y.; and see: PCT application published Jul. 4, 1996 under WO96/20218).
  • MCF-7 mp 53 cells (expressing a dominant-negative p53 mutation as described in S. Fan, et al. (1955) Cancer Research 55:1649-1654) were cultured as monolayers in DMEM supplemented with 10% fetal bovine serum, 2 mM L-glutamine, 50 units/ml penicillin, 50 μg/ml streptomycin, 1 mM sodium pyruvate, MEM non-essential amino acids, 1 μg/ml bovine insulin, 1 μg/ml hydrocortisone, 1 ng/ml human epidermal growth factor, and 1 ng/ml β-estradiol at 37° C. in humidified 5% CO2. The cells were seeded at 10,000 cells per well of 96-well polystyrene tissue culture plates (Falcon) in a volume of 200 μl cell culture medium. The cells were allowed to grow for 24 hours and compounds were added at about 1 μg/ml or 10 μg/ml (from 1000-fold stocks in dimethylsulfoxide) and the cells were incubated for 20 hours. Nocodazole (Sigma) served as a positive control. After treatment with the agent to be tested, the cell culture medium was removed completely and the 96-well tissue culture plates were frozen at −70° C. for up to 2 hours. The frozen cells were thawed by addition of 100 μl of ice-cold lysis buffer (0.5 mM phenylmethylsulfonylfluoride, 1 mM ethylene glycol-bis(β-aminoethyl ether) N,N,N,N′-tetraacetic acid, pH 7.4,) and lysed by pipeting up-and-down 10 times. The cell lysates were transferred to 96-well PolySorp ELISA plates (Nunc) and dried completely by blowing warm air at about 37° C. with a hair drier positioned about 3 feet above the plates. Protein binding sites were blocked by adding 200 μl per well of 10 mM Tris HCl pH 7.4, 150 mM NaCl, 0.1 mM PMSF, 3% (w/v) dried non-fat milk (Carnation) for 1 hour at room temperature. This was removed and replaced with 100 μl of the same solution containing 0.1-0.15 μg/ml TG-3 mitosis-specific monoclonal antibody and horseradish peroxidase-labelled goat anti-mouse IgM (1021-05, Southern Biotechnology Associates) at a dilution of 1/500. After overnight incubation at 4° C., the antibody solution was removed and the wells were rinsed 3 times with 200 μl rinse buffer (10 mM Tris HCl pH 7.4, 0.02% Tween 20). 100 μl of 120 mM Na2HPO4, 100 mM citric acid, pH 4.0 containing 0.5 mg/ ml 2,2′-azino-bis(3-ethylbenzthiazoline-6-sulfonic acid) and 0.01% hydrogen peroxide was added for 1 hour at room temperature and the plates were read at 405 nm using a BioTek plate reader.
  • Results comparing antimitotic activity of hemiasterlin to SPA-110 are shown in FIG. 6. SPA-110 exhibited considerably greater antimitotic activity than the naturally occurring compound.
  • In Vivo Activity of SPA-110
  • The compound SPA-110 was evaluated in vivo using standard pharmacological test procedures which measure its ability to inhibit the growth of human tumor xenografts. The human colon carcinoma LOVO (American Type Culture Collection, Rockville, Md. #CCL-229) was grown in tissue culture in RPMI supplemented with 10% FBS. Athymic nu/nu female mice (Charles River, Wilmington, Mass.) were injected sub-cutaneously in the flank area with 7.0×106 LOVO cells. When tumors attained a mass of between 80 and 120 mg, the mice were randomized into treatment groups (day zero). Animals were treated intravenously once a day on days 1, 5, and 9 post staging (day zero) with 1 mg/kg/dose of SPA-110 prepared in 2.5% ethanol in saline or with saline as the vehicle control. Some animals were treated intraperitonealy once a day on days 1, 5 and 9 post staging with 1 mg/kg/dose Vincristine as a positive control. Tumor mass was determined every 7 days [(length×width2)/2] for 28 days post staging. RTG or relative tumor growth (Mean tumor mass on days 7, 14, 21 and 28 divided by the mean tumor mass on day zero) was determined for each treatment group. % T/C was calculated as RTC (treated group) % RTC (vehicle control group)×100. Statistical analysis (Student-t-test) of log relative tumor growth was used to compare treated verses control group in each experiment. A p-value (p≦0.05), which indicates a statistically significant reduction in relative tumor growth, was obtained in each case. 5 of 5 animals treated at day 28 with SPA-110 survived. 9 of 10 animals treated at day 28 with vincristine survived. The results are shown in the following table.
  • % T/C % T/C % T/C % T/C
    Treatment day
    7 day 14 day 21 day 28
    Vincristine 34 37 44 47
    SPA-110 1 mg /kg 16 18 30 47
  • Relative Activity of Compounds of this Invention
  • Various analogs of SPA-110 have been synthesized and characterized for their cytotoxic and anti-mitotic activities. The high degree of correlation between cytotoxicity and anti-mitotic capacity indicates that the cytotoxicity of the compounds of this invention is due to the compounds' anti-mitotic activity. The following structures are analogs falling within the scope of this invention depicted in approximately descending order of cytotoxic/anti-mitotic activity.
  • Compound structure (TFA salt)
    Compound Name Me = CH3
    SPA110
    Figure US20090264487A1-20091022-C00029
    SPA115
    Figure US20090264487A1-20091022-C00030
    SPA123
    Figure US20090264487A1-20091022-C00031
    SPA116
    Figure US20090264487A1-20091022-C00032
    SPA121
    Figure US20090264487A1-20091022-C00033
    SPA122
    Figure US20090264487A1-20091022-C00034
    SPA114
    Figure US20090264487A1-20091022-C00035
  • As will be apparent to those skilled in the art in the light of the foregoing disclosure, many alterations and modifications are possible in the practice of this invention without departing from the spirit or scope thereof. Accordingly, the scope of the invention is to be construed in accordance with the substance defined by the claims herein, which substance includes obvious chemical equivalents of the compounds and methods set out in the claims.

Claims (17)

1. A compound or pharmaceutically acceptable salt thereof, having the formula:
Figure US20090264487A1-20091022-C00036
wherein:
R1 and R2 are independently selected from the group consisting of: H, R, and ArR—, and where at least one of R1 and R2 is R the other is not ArR—; R1 and R2 together may optionally be a three to seven member non-aromatic ring;
R3 and R4 are independently selected from the group consisting of: H, R, and ArR—, and where at least one of R3 and R4 is R the other is not ArR, R3 and R4 together may optionally be a three to seven member non-aromatic ring;
R5 is selected from the group consisting of: H, R, ArR—, and Ar;
R6 is selected from the group consisting of: H, R, and ArR—;
R7 and R8 are independently selected from the group consisting of: H, R, and ArR—; and
R9 is:
Figure US20090264487A1-20091022-C00037
and wherein,
R is defined as a saturated or unsaturated moiety having a linear, branched, or non-aromatic cyclic skeleton containing one to ten carbon atoms, zero to four nitrogen atoms, zero to four oxygen atoms, and zero to four sulfur atoms, and the carbon atoms are optionally substituted with: ═O, ═S, —OH, —OR10, —O2CR10, —SH, —SR10, —SOCR10, —NH2, —NHR10, —N(R10)2, —NHCOR10, —NR10COR10, —I, —Br, —Cl, —F, —CN, —CO2H, —CO2R10, —CHO, —COR10, —CONH2, —CONHR10, —CON(R10)2, —COSH, —COSR10, —NO2, —SO3H, —SOR10, —SO2R10, wherein R10 is a linear, branched or cyclic, one to ten carbon saturated or unsaturated alkyl group,
X is defined as a moiety selected from the group consisting of: —OH, —OR, ═O, ═S, —O2CR, —SH, —SR, —SOCR, —NH2, —NHR, —N(R)2, —NHCOR, —NRCOR, —I, —Br, —Cl, —F, —CN, —CO2H, —CO2R, —CHO, —COR, —CONH2, —CONHR, —CON(R)2, —COSH, —COSR, —NO2, —SO3H, —SOR, and —SO2R;
Ar is an aromatic ring selected from the group consisting of: phenyl, naphthyl, anthracyl, phenanthryl, furyl, pyrrolyl, thiophenyl, benzofuryl, benzothiophenyl, quinolinyl, isoquinolyl, imidazolyl, thiazolyl, oxazolyl, and pyridinyl, optionally substituted with R or X;
Y is a linear, unsaturated, one to six carbon alkyl group, optionally substituted with R, ArR—, or X; and
Z is defined as a moiety selected from the group consisting of: —NHR; and —N(R)2.
2. The compound of claim 1 wherein Ar is phenyl, naphthyl, anthracyl, or pyrrolyl.
3. The compound of claim 2 wherein R5 is phenyl, naphthyl, anthracyl, or pyrrolyl.
4. The compound of claim 1 wherein R3 and R4 are independently selected from the group consisting of: methyl, ethyl, n-propyl, and n-butyl; or R3 and R4 together are joined to form a moiety selected from the group consisting of: cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
5. The compound of claim 1 wherein R1 and R2 are independently selected from the group consisting of: H, methyl, ethyl, propyl, n-butyl and acetyl; or R1 and R2 together are joined to form a moiety selected from the group consisting of: cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
6. The compound of claim 1 wherein R1 and R2 are independently: H, methyl, or acetyl.
7. The compound of claim 1 wherein R1 is H and R2 is methyl.
8. The compound of claim 1 wherein R7 is a three to six carbon alkyl group.
9. The compound of claim 1 wherein R6 and R8 are independently: H or methyl.
10. The compound of claim 1 wherein R6 is H, R7 is —C(CH)3)3 and R8 methyl.
11. The compound of claim 1 wherein R3 and R4 are each R.
12. The compound of claim 1 wherein R3 and R4 are each methyl.
13. The compound of claim 1 wherein R5 is phenyl.
14. A method of inhibiting mitosis of a tumor cell comprising contacting the tumor cell with an effective amount of a compound according to claim 1.
15. A method of treating colon cancer comprising administering to a patient in need thereof an anti-mitotic effective amount of a compound according to claim 1.
16. A method of treating breast cancer comprising administering to a patient in need thereof an anti-mitotic effective amount of a compound according to claim 1.
17. A method of treating lung cancer comprising administering to a patient in need thereof an anti-mitotic effective amount of a compound according to claim 1.
US12/491,839 1997-12-19 2009-06-25 Hemiasterlin analogs Abandoned US20090264487A1 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
US12/491,839 US20090264487A1 (en) 1997-12-19 2009-06-25 Hemiasterlin analogs

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
CA002225325A CA2225325A1 (en) 1997-12-19 1997-12-19 Hemiasterlin analogs
CA2225325 1997-12-19
PCT/CA1998/001184 WO1999032509A2 (en) 1997-12-19 1998-12-18 Hemiasterlin analogs
US58151100A 2000-10-06 2000-10-06
US12/491,839 US20090264487A1 (en) 1997-12-19 2009-06-25 Hemiasterlin analogs

Related Parent Applications (2)

Application Number Title Priority Date Filing Date
PCT/CA1998/001184 Division WO1999032509A2 (en) 1997-12-19 1998-12-18 Hemiasterlin analogs
US58151100A Division 1997-12-19 2000-10-06

Publications (1)

Publication Number Publication Date
US20090264487A1 true US20090264487A1 (en) 2009-10-22

Family

ID=4161925

Family Applications (2)

Application Number Title Priority Date Filing Date
US09/581,511 Expired - Fee Related US7579323B1 (en) 1997-12-19 1998-12-13 Hemiasterlin analogs
US12/491,839 Abandoned US20090264487A1 (en) 1997-12-19 2009-06-25 Hemiasterlin analogs

Family Applications Before (1)

Application Number Title Priority Date Filing Date
US09/581,511 Expired - Fee Related US7579323B1 (en) 1997-12-19 1998-12-13 Hemiasterlin analogs

Country Status (17)

Country Link
US (2) US7579323B1 (en)
EP (1) EP1040119B1 (en)
JP (1) JP4417551B2 (en)
KR (1) KR100937756B1 (en)
CN (1) CN100422208C (en)
AT (1) ATE419268T1 (en)
AU (1) AU762691C (en)
BR (1) BR9813817A (en)
CA (2) CA2225325A1 (en)
DE (1) DE69840415D1 (en)
DK (1) DK1040119T3 (en)
ES (1) ES2320499T3 (en)
HK (1) HK1034523A1 (en)
HU (1) HUP0105460A3 (en)
IL (1) IL136654A0 (en)
NZ (1) NZ505086A (en)
WO (1) WO1999032509A2 (en)

Cited By (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2011089396A2 (en) 2010-01-22 2011-07-28 St George's Hospital Medical School Pyruvamide compounds as inhibitors of dust mite group 1 peptidase allergen and their use.
US9522876B2 (en) 2013-03-15 2016-12-20 Zymeworks Inc. Cytotoxic and anti-mitotic compounds, and methods of using the same
US9879086B2 (en) 2014-09-17 2018-01-30 Zymeworks Inc. Cytotoxic and anti-mitotic compounds, and methods of using the same
US10517958B2 (en) 2016-10-04 2019-12-31 Zymeworks Inc. Compositions and methods for the treatment of platinum-drug resistant cancer
US10675355B2 (en) 2013-12-27 2020-06-09 Var2 Pharmaceuticals Aps VAR2CSA-drug conjugates
US10844090B2 (en) 2015-01-30 2020-11-24 Sutro Biopharma, Inc. Hemiasterlin derivatives for conjugation and therapy
US11560422B2 (en) 2013-12-27 2023-01-24 Zymeworks Inc. Sulfonamide-containing linkage systems for drug conjugates

Families Citing this family (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1531846A4 (en) * 2002-02-27 2006-04-19 Us Gov Health & Human Serv Conjugates of ligand, linker and cytotoxic agent and related compositions and methods of use
AU2003228354B8 (en) 2002-03-22 2010-03-04 Eisai R&D Management Co., Ltd. Hemiasterlin derivatives and uses thereof in the treatment of cancer
US7064211B2 (en) 2002-03-22 2006-06-20 Eisai Co., Ltd. Hemiasterlin derivatives and uses thereof
CN1705639A (en) 2002-09-20 2005-12-07 惠氏控股公司 Process for the synthesis of intermediates useful for the synthesis of tubulin inhibitors
AU2003275126A1 (en) * 2002-09-20 2004-04-08 Wyeth Holdings Corporation Hemiasterlin derivatives for treating resistant tumors
US20070026478A1 (en) * 2002-11-21 2007-02-01 Wyeth Hemiasterlin affinity probes and their uses
US7390910B2 (en) * 2003-08-08 2008-06-24 Wyeth Compounds for treating tumors
CA3026074A1 (en) 2016-06-01 2017-12-07 M3 Biotechnology, Inc. N-hexanoic-l-tyrosine-l-isoleucine-(6)-aminohexanoic amide compounds and their use to treat neurodegenerative diseases
WO2018128745A1 (en) 2017-01-06 2018-07-12 The Board Of Trustees Of The Leland Stanford Junior University Ciliary neurotrophic factor receptor ligands and methods of using the same
JP7202301B2 (en) 2017-08-10 2023-01-11 住友ファーマ株式会社 Hemiasterin derivatives and their antibody-drug conjugates
CA3072153A1 (en) 2017-08-10 2019-02-14 Sumitomo Dainippon Pharma Co., Ltd. Antibody-drug conjugates including hemiasterlin derivative
JP7432531B2 (en) 2019-02-13 2024-02-16 住友ファーマ株式会社 Hemiasterlin derivatives with cysteine residues

Citations (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4048305A (en) * 1975-04-09 1977-09-13 Dr. L. Zambeletti S.P.A. Tripeptides, their esters and amides, and anti-ulcera activity thereof
US5661175A (en) * 1995-06-20 1997-08-26 Kashman; Yoel Hemiasterlin and geodiamolide TA
US5736517A (en) * 1989-09-15 1998-04-07 Biomeasure, Inc. Treatment of cancer with peptides
US5811515A (en) * 1995-06-12 1998-09-22 California Institute Of Technology Synthesis of conformationally restricted amino acids, peptides, and peptidomimetics by catalytic ring closing metathesis
US6126939A (en) * 1996-09-03 2000-10-03 Yeda Research And Development Co. Ltd. Anti-inflammatory dipeptide and pharmaceutical composition thereof
US6153590A (en) * 1995-04-20 2000-11-28 University Of Alberta Biologically active peptides and compositions, their use
US6194578B1 (en) * 1998-11-20 2001-02-27 Pfizer Inc. Dipeptide derivatives
US6214799B1 (en) * 1996-05-14 2001-04-10 Agouron Pharmaceuticals, Inc. Antipicornaviral compounds and methods for their use and preparation
US6331554B1 (en) * 1997-03-28 2001-12-18 Agouron Pharmaceuticals, Inc. Antipicornaviral compounds, compositions containing them, and methods for their use

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP0150227A1 (en) 1983-12-23 1985-08-07 FUJIREBIO KABUSHIKI KAISHA also trading as FUJIREBIO INC. Dipeptide derivatives and their use in determining the activity of carboxypeptidase A
IT1209644B (en) * 1985-06-21 1989-08-30 Isf Spa PHARMACOLOGICALLY ACTIVE COMPOUNDS.
US4820691A (en) 1987-06-24 1989-04-11 E. R. Squibb & Sons, Inc. Amino acid 1,2-diketo derivatives as renin inhibitors
WO1997004004A1 (en) * 1995-07-17 1997-02-06 Peptide Therapeutics Limited CYSTEINE PROTEASE INHIBITORS FOR USE IN TREATMENT OF IgE MEDIATED ALLERGIC DISEASES

Patent Citations (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4048305A (en) * 1975-04-09 1977-09-13 Dr. L. Zambeletti S.P.A. Tripeptides, their esters and amides, and anti-ulcera activity thereof
US5736517A (en) * 1989-09-15 1998-04-07 Biomeasure, Inc. Treatment of cancer with peptides
US6153590A (en) * 1995-04-20 2000-11-28 University Of Alberta Biologically active peptides and compositions, their use
US5811515A (en) * 1995-06-12 1998-09-22 California Institute Of Technology Synthesis of conformationally restricted amino acids, peptides, and peptidomimetics by catalytic ring closing metathesis
US5661175A (en) * 1995-06-20 1997-08-26 Kashman; Yoel Hemiasterlin and geodiamolide TA
US6214799B1 (en) * 1996-05-14 2001-04-10 Agouron Pharmaceuticals, Inc. Antipicornaviral compounds and methods for their use and preparation
US6362166B1 (en) * 1996-05-14 2002-03-26 Agouron Pharmaceuticals, Inc. Antipicornaviral compounds and methods for their use and preparation
US6126939A (en) * 1996-09-03 2000-10-03 Yeda Research And Development Co. Ltd. Anti-inflammatory dipeptide and pharmaceutical composition thereof
US6331554B1 (en) * 1997-03-28 2001-12-18 Agouron Pharmaceuticals, Inc. Antipicornaviral compounds, compositions containing them, and methods for their use
US6194578B1 (en) * 1998-11-20 2001-02-27 Pfizer Inc. Dipeptide derivatives

Cited By (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2011089396A2 (en) 2010-01-22 2011-07-28 St George's Hospital Medical School Pyruvamide compounds as inhibitors of dust mite group 1 peptidase allergen and their use.
US9522876B2 (en) 2013-03-15 2016-12-20 Zymeworks Inc. Cytotoxic and anti-mitotic compounds, and methods of using the same
US11617777B2 (en) 2013-03-15 2023-04-04 Zymeworks Bc Inc. Cytotoxic and anti-mitotic compounds, and methods of using the same
US10201614B2 (en) 2013-03-15 2019-02-12 Zymeworks Inc. Cytotoxic and anti-mitotic compounds, and methods of using the same
US11560422B2 (en) 2013-12-27 2023-01-24 Zymeworks Inc. Sulfonamide-containing linkage systems for drug conjugates
US10675355B2 (en) 2013-12-27 2020-06-09 Var2 Pharmaceuticals Aps VAR2CSA-drug conjugates
US10450378B2 (en) 2014-09-17 2019-10-22 Zymeworks Inc. Cytotoxic and anti-mitotic compounds, and methods of using the same
US10414822B2 (en) 2014-09-17 2019-09-17 Zymeworks Inc. Cytotoxic and anti-mitotic compounds, and methods of using the same
US11591405B2 (en) 2014-09-17 2023-02-28 Zymeworks Bc Inc. Cytotoxic and anti-mitotic compounds, and methods of using the same
US9879086B2 (en) 2014-09-17 2018-01-30 Zymeworks Inc. Cytotoxic and anti-mitotic compounds, and methods of using the same
US10844090B2 (en) 2015-01-30 2020-11-24 Sutro Biopharma, Inc. Hemiasterlin derivatives for conjugation and therapy
US11866515B2 (en) 2015-01-30 2024-01-09 Sutro Biopharma, Inc. Hemiasterlin derivatives for conjugation and therapy
US10517958B2 (en) 2016-10-04 2019-12-31 Zymeworks Inc. Compositions and methods for the treatment of platinum-drug resistant cancer

Also Published As

Publication number Publication date
IL136654A0 (en) 2001-06-14
CN100422208C (en) 2008-10-01
HUP0105460A2 (en) 2002-06-29
AU1745999A (en) 1999-07-12
CA2225325A1 (en) 1999-06-19
JP2001526294A (en) 2001-12-18
ATE419268T1 (en) 2009-01-15
EP1040119B1 (en) 2008-12-31
BR9813817A (en) 2000-10-10
CA2312826A1 (en) 1999-07-01
AU762691B2 (en) 2003-07-03
NZ505086A (en) 2003-05-30
HK1034523A1 (en) 2001-10-26
EP1040119A2 (en) 2000-10-04
ES2320499T3 (en) 2009-05-22
DK1040119T3 (en) 2009-04-14
JP4417551B2 (en) 2010-02-17
KR20010024783A (en) 2001-03-26
CN1282336A (en) 2001-01-31
AU762691C (en) 2004-07-08
WO1999032509A3 (en) 1999-10-07
KR100937756B1 (en) 2010-01-20
US7579323B1 (en) 2009-08-25
CA2312826C (en) 2013-06-11
WO1999032509A2 (en) 1999-07-01
HUP0105460A3 (en) 2002-08-28
DE69840415D1 (en) 2009-02-12

Similar Documents

Publication Publication Date Title
US20090264487A1 (en) Hemiasterlin analogs
US7410951B2 (en) Biologically active peptides and compositions, their use
US5840918A (en) Isoprenyl transferase inhibitors
KR100296543B1 (en) Urethane and urea for inducing cytokine production, and a method for producing the same
KR100712589B1 (en) Antitumor Agents
US4904680A (en) Amino acid derivatives having anti-tumor activity and compositions containing them
US4487763A (en) Peptide, process for preparation thereof and use thereof
CA2118661A1 (en) Acyloxyhexanoic acid derivatives
US4354966A (en) Peptides, process for preparation thereof and use thereof
MXPA00005677A (en) Hemiasterlin analogs
MXPA00008090A (en) Antitumor agents

Legal Events

Date Code Title Description
STCB Information on status: application discontinuation

Free format text: ABANDONED -- FAILURE TO RESPOND TO AN OFFICE ACTION