US20100160371A1

US20100160371A1 - Inhibition of p38 kinase activity by aryl ureas

Info

Publication number: US20100160371A1
Application number: US12/619,913
Authority: US
Inventors: Gerald Ranges; William Scott; Michael Bombara; Deborah Rauner; Aniko Redman; Roger Smith; Holger Paulsen; David Gunn; Jinshan Chen; Joel Renick
Original assignee: Individual
Current assignee: Individual
Priority date: 1997-05-23
Filing date: 2009-11-17
Publication date: 2010-06-24
Also published as: US6344476B1; US20020103253A1

Abstract

This invention relates to the use of a group of aryl ureas in treating cytokine mediated diseases other than cancer and proteolytic enzyme mediated diseases other than cancer, and pharmaceutical compositions for use in such therapy.

Description

FIELD OF THE INVENTION

This invention relates to the use of a group of aryl ureas in treating cytokine mediated diseases and proteolytic enzyme mediated diseases, and pharmaceutical compositions for use in such therapy.

BACKGROUND OF THE INVENTION

Two classes of effector molecules which are critical for the progression of rheumatoid arthritis are pro-inflammatory cytokines and tissue degrading proteases. Recently, a family of kinases was described which is instrumental in controlling the transcription and translation of the structural genes coding for these effector molecules.
The MAP kinase family is made up of a series of structurally related proline-directed serine/threonine kinases which are activated either by growth factors (such as EGF) and phorbol esters (ERK), or by IL-1, TNFα or stress (p38, JNK). The MAP kinases are responsible for the activation of a wide variety of transcription factors and proteins involved in transcriptional control of cytokine production. A pair of novel protein kinases involved in the regulation of cytokine synthesis was recently described by a group from SmithKline Beecham (Lee et al. Nature 1994, 372, 739). These enzymes were isolated based on their affinity to bond to a class of compounds, named CSAIDs (cytokine suppressive anti-inflammatory drugs) by SKB. The CSAIDs, pyridinyl imidazoles, have been shown to have cytokine inhibitory activity both in vitro and in vivo. The isolated enzymes, CSBP-1 and -2 (CSAID binding protein 1 and 2) have been cloned and expressed. A murine homologue for CSBP-2, p38, has also been reported (Han et al. Science 1994, 265, 808).
Early studies suggested that CSAIDs function by interfering with m-RNA translational events during cytokine biosynthesis. Inhibition of p38 has been shown to inhibit both cytokine production (eg., TNFα, IL-1, IL-6, IL-8; Lee et al. N.Y. Acad. Sci. 1993, 696, 149) and proteolytic enzyme production (eg., MMP-1, MMP-3; Ridley et al. J. Immunol. 1997, 158, 3165) in vitro and/or in vivo.
Clinical studies have linked TNFα production and/or signaling to a number of diseases including rheumatoid arthritis (Maini. J. Royal Coll. Physicians London 1996, 30, 344). In addition, excessive levels of TNFα have been implicated in a wide variety of inflammatory and/or immunomodulatory diseases, including acute rheumatic fever (Yegin et al. Lancet 1997, 349, 170), bone resorption (Pacifici et al. J. Clin. Endocrinol. Metabol. 1997, 82, 29), postmenopausal osteoporosis (Pacifici et al. J. Bone Mineral Res. 1996, 11, 1043), sepsis (Blackwell et al. Br. J. Anaesth. 1996, 77, 110), gram negative sepsis (Debets et al. Prog. Clin. Biol. Res. 1989, 308, 463), septic shock (Tracey et al. Nature 1987, 330, 662; Girardin et al. New England J. Med. 1988, 319, 397), endotoxic shock (Beutler et al. Science 1985, 229, 869; Ashkenasi et al. Proc. Nat'l Acad. Sci. USA 1991, 88, 10535), toxic shock syndrome (Saha et al. J. Immunol. 1996, 157, 3869; Lina et al. FEMS Immunol. Med. Microbial, 1996, 13, 81), systemic inflammatory response syndrome (Anon. Crit. Care Med. 1992, 20, 864), inflammatory bowel diseases (Stokkers et al. J. Inflamm. 1995-6, 47, 97) including Crohn's disease (van Deventer et al. Aliment. Pharmacol. Therapeu. 1996, 10 (Suppl. 2), 107; van Dullemen et al. Gastroenterology 1995, 109, 129) and ulcerative colitis (Masuda et al. J. Clin. Lab. Immunol. 1995; 46, 111), Jarisch-Herxheimer reactions (Fekade et al. New England J. Med. 1996, 335, 311), asthma (Amrani et al. Rev. Malad. Respir. 1996, 13, 539), adult respiratory distress syndrome (Roten et al. Am. Rev. Respir. Dis. 1991, 143, 590; Suter et al. Am. Rev. Respir. Dis. 1992, 145, 1016), acute pulmonary fibrotic diseases (Pan et al. Pathol Int. 1996, 46, 91), pulmonary sarcoidosis (Ishioka et al. Sarcoidosis Vasculitis Diffuse Lung Dis. 1996, 13, 139), allergic respiratory diseases (Casale et al. Am. J. Respir. Cell Mol. Biol. 1996, 15, 35), silicosis (Gossart et al. J. Immunol. 1996, 156, 1540; Vanhee et al. Eur. Respir. J. 1995, 8, 834), coal worker's pneumoconiosis (Bonn et al. Am. Rev. Respir. Dis. 1988, 138, 1589), alveolar injury (Horinouchi et al. Am. J. Respir. Cell Mol. Biol. 1996, 14, 1044), hepatic failure (Gantner et. al. J. Pharmacol. Exp. Therap. 1997, 280, 53), liver disease during acute inflammation (Kim et al. J. Biol. Chem. 1997, 272, 1402), severe alcoholic hepatitis (Bird et al. Ann. Intern. Med. 1990, 112, 917), malaria (Grau et al. Immunol. Rev. 1989, 112, 49; Taverne et al. Parasitol. Today 1996, 12, 290) including Plasmodium falciparum malaria (Perlmann et al. Infect. Immunit. 1997, 65, 116) and cerebral malaria (Rudin et al. Am. J. Pathol. 1997, 150, 257), non-insulin-dependent diabetes mellitus (NIDDM; Stephens et al. J. Biol. Chem. 1997, 272, 971; Ofei et al. Diabetes 1996, 45, 881), congestive heart failure (Doyama et al. Int. J. Cardiol. 1996, 54, 217; McMurray et al. Br. Heart J. 1991, 66, 356), damage following heart disease (Malkiel et al. Mol. Med. Today 1996, 2, 336), atherosclerosis (Paruns et al. J. Pathol. 1996, 179, A46), Alzheimer's disease (Fagarasan et al. Brain Res. 1996, 723, 231; Aisen et al. Gerontology 1997, 43, 143), acute encephalitis (Ichiyama et al. J. Neural. 1996, 243, 457), brain injury (Cannon et al. Crit. Care Med. 1992, 20, 1414; Hansbrough et al. Surg. Clin. N. Am. 1987, 67, 69; Marano et al. Surg. Gynecol. Obstetr. 1990, 170, 32), multiple sclerosis (M. S.; Coyle. Adv. Neuroimmunol. 1996, 6, 143; Matusevicius et al. J. Neuroimmunol. 1996, 66, 115) including demyelation and oligiodendrocyte loss in multiple sclerosis (Brosnan et al. Brain Pathol. 1996, 6, 243), advanced cancer (MucWierzgon et al. J. Biol. Regulators Homeostatic Agents 1996, 10; 25), lymphoid malignancies (Levy et al. Crit. Rev. Immunol. 1996, 16, 31), pancreatitis (Exley et al. Gut 1992, 33, 1126) including systemic complications in acute pancreatitis (McKay et al. Br. J. Surg. 1996, 83, 919), impaired wound healing in infection inflammation and cancer (Buck et, al. Am. J. Pathol. 1996, 149, 195), myelodysplastic syndromes (Raza et al. Int. J. Hematol. 1996, 63, 265), systemic lupus erythematosus (Maury et al. Arthritis Rheum. 1989, 32, 146), biliary cirrhosis (Miller et al. Am. J. Gasteroenterolog. 1992, 87, 465), bowel necrosis (Sun et al. J. Clin. Invest. 1988, 81, 1328), psoriasis (Christophers. Austr. J. Dermatol. 1996, 37, S4), radiation injury (Redlich et al. J. Immunol. 1996, 157, 1705), and toxicity following administration of monoclonal antibodies such as OKT3 (Brod et al. Neurology 1996, 46, 1633). THFα levels have also been related to host-versus-graft reactions (Piguet et al. Immunol. Ser. 1992, 56, 409) including ischemia reperfusion injury (Colletti et al. J. Clin. Invest. 1989, 85, 1333) and allograft rejections, including those of the kidney (Maury et al. J. Exp. Med. 1987, 166, 1132), liver (Imagawa et al. Transplantation 1990, 50, 219), heart (Boiling et al. Transplantation 1992, 53, 283), and skin (Stevens et al. Transplant. Proc. 1990, 22, 1924), lung allograft rejection (Grossman et al. Immunol. Allergy Clin. N. Am. 1989, 9, 153) including chronic lung allograft rejection (obliterative bronchitis; LoCicero et al. J. Thorac. Cardiovasc. Surg. 1990, 99, 1059), as well as complications due to total hip replacement (Cirino et al. Life Sci. 1996, 59, 86). THFα has also been linked to infectious diseases (review: Beutler et al. Crit. Care Med. 1993, 21, 5423; Degre. Biotherapy 1996, 8, 219) including tuberculosis (Rook et al. Med. Malad. Infect. 1996, 26, 904), Helicobacter pylori infection during peptic ulcer disease (Beales et al. Gastroenterology 1997, 112, 136), Chaga's disease resulting from Trypanosoma cruzi infection (Chandrasekar et al. Biochem. Biophys. Res. Commun. 1996, 223, 365), effects of Shiga-like toxin resulting from E. coli infection (Harel et al. J. Clin. Invest. 1992, 56, 40), the effects of enterotoxin A resulting from Staphylococcus infection (Fischer et al. J. Immunol. 1990, 144, 4663), meningococcal infection (Waage et al. Lancet 1987, 355; Ossege et al. J. Neurolog. Sci. 1996, 144, 1), and infections from Borrelia burgdorferi (Brandt et al. Infect. Immunol. 1990, 58, 983), Treponema pallidum (Chamberlin et al. Infect. Immunol. 1989, 57, 2872), cytomegalovirus (CMV; Geist et al. Am. J. Respir. Cell Mol. Biol. 1997, 16, 31), influenza virus (Beutler et al. Clin. Res. 1986, 34, 491a), Sendai virus (Goldfield et al. Proc. Nat'l. Acad. Sci. USA 1989, 87, 1490), Theiler's encephalomyelitis virus (Sierra et al. Immunology 1993, 78, 399), and the human immunodeficiency virus (HIV; Poli, Proc. Nat'l. Acad. Sci. USA 1990, 87, 782; Vyakaram et al. AIDS 1990, 4, 21; Badley et al. J. Exp. Med. 1997, 185, 55).
Because inhibition of p38 leads to inhibition of TNFα production, p38 inhibitors will be useful in treatment of the above listed diseases.
A number of diseases are mediated by excess or undesired matrix-destroying metalloprotease (MMP) activity or by an imbalance in the ratio of the MMPs to the tissue inhibitors of metalloproteinases (TIMPs). These include osteoarthritis (Woessner et al. J. Biol. Chem. 1984, 259, 3633), rheumatoid arthritis (Mullins et al. Biochim. Biophys. Acta 1983, 695, 117; Woolley et al. Arthritis Rheum. 1977, 20, 1231; Gravallese et al. Arthritis Rheum. 1991, 34; 1076), septic arthritis (Williams et al. Arthritis Rheum. 1990, 33, 533), tumor metastasis (Reich et al. Cancer Res. 1988, 48, 3307; Matrisian et al. Proc. Nat'l. Acad. Sci., USA 1986, 83, 9413), periodontal diseases (Overall et al. J. Periodontal Res. 1987, 22, 81), corneal ulceration (Burns et al. Invest. Opthalmol. Vis. Sci. 1989, 30, 1569), proteinuria (Baricos et al. Biochem. J. 1988, 254, 609), coronary thrombosis from atherosclerotic plaque rupture (Henney et al. Proc. Nat'l. Acad. Sci., USA 1991, 88, 8154), aneurysmal aortic disease (Vine et al. Clin. Sci. 1991, 81, 233), dystrophobic epidermolysis bullosa (Kronberger et al. J. Invest. Dermatol. 1982, 79, 208), degenerative cartilage loss following traumatic joint injury, osteopenias mediated by MMP activity; tempero mandibular joint disease, and demyelating diseases of the nervous system (Chantry et al. J. Neurochem. 1988, 50, 688).
Because inhibition of p38 leads to inhibition of MMP production, p38 inhibitors will be useful in treatment of the above listed diseases.
Inhibitors of p38 are active in animal models of TNFα production, including a murine lipopolysaccharide (LPS) model of TNFα production. Inhibitors of p38 are active in a number of standard animal models of inflammatory diseases, including carrageenan-induced edema in the rat paw, arachadonic acid-induced edema in the rat paw, arachadonic acid-induced peritonitis in the mouse, fetal rat long bone resorption, murine type II collagen-induced arthritis, and Fruend's adjuvant-induced arthritis in the rat. Thus, inhibitors of p38 will be useful in treating diseases mediated by one or more of the above-mentioned cytokines and/or proteolytic enzymes.
The need for new therapies is especially important in the case of arthritic diseases. The primary disabling effect of osteoarthritis, rheumatoid arthritis and septic arthritis is the progressive loss of articular cartilage and thereby normal joint function. No marketed pharmaceutical agent is able to prevent or slow this cartilage loss, although nonsteroidal antiinflammatory drugs (NSAIDs) have been given to control pain and swelling. The end result of these diseases is total loss of joint function which is only treatable by joint replacement surgery. P38 inhibitors will halt or reverse the progression of cartilage loss and obviate or delay surgical intervention.
Several patents have appeared claiming polyarylimidazoles and/or compounds containing polyarylimidazoles as inhibitors of p38 (for example, Lee et al. WO 95/07922; Adams et al. WO 95/02591; Adams et al. WO 95/13067; Adams et al. WO 95/31451). It has been reported that arylimidazoles complex to the ferric form of cytochrome P450_cam(Harris et al. Mol. Eng. 1995, 5, 143, and references therein), causing concern that these compounds may display structure-related toxicity (Howard-Martin et al. Toxicol. Pathol. 1987, 15, 369). Therefore, there remains a need for improved p38 inhibitors.

SUMMARY OF THE INVENTION

This invention provides compounds, generally described as aryl ureas, including both aryl and heteroaryl analogues, which inhibit p38 mediated events and thus inhibit the production of cytokines (such as TNFα, IL-1 and IL-8) and proteolytic enzymes (such as MMP-1 and MMP-3). The invention also provides a method of treating a cytokine mediated disease state in humans or mammals, wherein the cytokine is one whose production is affected by p38. Examples of such cytokines include, but are not limited to TNFα, IL-1 and IL-8. The invention also provides a method of treating a protease mediated disease state in humans or mammals, wherein the protease is one whose production is affected by p38. Examples of such proteases include, but are not limited to collagenase (MMP-1) and stromelysin (MMP-3).
Accordingly, these compounds are useful therapeutic agents for such acute and chronic inflammatory and/or immunomodulatory diseases as rheumatoid arthritis, osteoarthritis, septic arthritis, rheumatic fever, bone resorption, postmenopausal osteoperosis, sepsis, gram negative sepsis, septic shock, endotoxic shock, toxic shock syndrome, systemic inflammatory response syndrome, inflammatory bowel diseases including Crohn's disease and ulcerative colitis, Jarisch-Herxheimer reactions, asthma, adult respiratory distress syndrome, acute pulmonary fibrotic diseases, pulmonary sarcoidosis, allergic respiratory diseases, silicosis, coal worker's pneumoconiosis, alveolar injury, hepatic failure, liver disease during acute inflammation, severe alcoholic hepatitis, malaria including Plasmodium falciparum malaria and cerebral malaria, non-insulin-dependent diabetes mellitus (NIDDM), congestive heart failure, damage following heart disease, atherosclerosis, Alzheimer's disease, acute encephalitis, brain injury, multiple sclerosis (MS) including demyelation and oligiodendrocyte loss in multiple sclerosis, advanced cancer, lymphoid malignancies, tumor metastasis, pancreatitis, including systemic complications in acute pancreatitis, impaired wound healing in infection, inflammation and cancer, periodontal diseases, corneal ulceration, proteinuria, myelodysplastic syndromes, systemic lupus erythematosus, biliary cirrhosis, bowel necrosis, psoriasis, radiation injury, toxicity following administration of monoclonal antibodies such as OKT3, host-versus-graft reactions including ischemia reperfusion injury and allograft rejections including kidney, liver, heart, and skin allograft rejections, lung allograft rejection including chronic lung allograft rejection (obliterative bronchitis) as well as complications due to total hip replacement, and infectious diseases including tuberculosis, Helicobacter pylori infection during peptic ulcer disease, Chaga's disease resulting from Trypanosoma cruzi infection, effects of Shiga-like toxin resulting from E. coli infection, effects of enterotoxin A resulting from Staphylococcus infection, meningococcal infection, and infections from Borrelia burgdorferi, Treponema pallidum, cytomegalovirus, influenza virus, Theiler's encephalomyelitis virus, and the human immunodeficiency virus (HIV).
Accordingly, the present invention is directed to a method for the treatment of diseases mediated by p38, e.g., mediated by one or more cytokines or proteolytic enzymes produced and/or activated by a p38 mediated process, comprising administering, a compound of Formula I,
wherein

A is C_6-12-aryl or C_5-12-heteroaryl, each optionally substituted, e.g. by C_1-4-alkyl, C_3-6-cycloalkyl, halogen, —OH, —OR¹, —NR¹ ₂;
B is

R¹is H or C_1-4-alkyl;
R²and R³are each independently halogen, —COOR¹, —CN, —CONR⁷R⁸, or —CH₂NHR⁹;
R⁵is C_3-5-alkyl;
R⁶is C_1-6-alkyl;
R⁷is hydrogen;
R⁸is methyl;
R⁹is hydrogen, methyl or —CO—R¹⁰; and
R¹⁰is hydrogen or methyl optionally substituted by NR⁶ ₂or COOR⁶.

In Formula I, suitable heteroaryl groups A include, but are not limited to, 5-10 carbon-atom aromatic rings or ring systems containing 1-2 rings, at least one of which is aromatic, in which one or more, e.g., 1-4 carbon atoms in one or more of the rings can be replaced by oxygen, nitrogen or sulfur atoms. Each ring typically has 5-6 atoms. For example, A can be 2- or 3-thienyl, 1,3,4-thiadiazol-2- or -5-yl, 7-indolyl; or 8-quinolinyl, or additionally optionally substituted phenyl, 2- or 3-thienyl, 1,3,4-thiadiazolyl, etc. For example, A can be 4-methylphenyl, 4-fluorophenyl, 5-methyl-2-thienyl, 4-methyl-2-thienyl or 5-cyclopropyl-1,3,4-thiadiazol-2-yl.
Suitable alkyl groups and alkyl portion of groups, e.g., alkoxy, etc. throughout include methyl, ethyl, propyl, butyl, etc., including all straight-chain and branched isomers such as isopropyl, isobutyl, sec-butyl, tert-butyl, etc.
Suitable cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, etc.
Suitable aryl groups include, for example, phenyl and 1- and 2-naphthyl.
Suitable halogen groups include F, Cl, Br, and/or I, from one to per-substitution (i.e. all H atoms on a group replaced by a halogen atom) being possible, mixed substitution of halogen atom types also being possible on a given moiety.
Preferred compounds of Formula I include those where R²or R³is —COOR¹or —CONR⁷R⁸; R¹is C_1-4-alkyl; R⁷is H; and R⁸is methyl, and those where R⁵is isopropyl or tert-butyl.
The invention also relates to compounds per se, of Formula II
wherein

A is C_6-12-aryl or C_5-12-heteroaryl, each optionally substituted, e.g., by C_1-4-alkyl, C_3-6-cycloalkyl, halogen, —OH, —OR¹, —NR¹ ₂;
B is

R¹is H or C_1-4-alkyl;
R²is —COOR¹, —CONR⁷R⁸, or —CH₂NHR⁹;
R⁵is C_3-5-alkyl;
R⁶is C_1-6-alkyl;
R⁷is H;
R⁸is methyl;
R⁹is hydrogen, methyl or —CO—R¹⁰; and
R¹⁰is hydrogen or methyl optionally substituted by NR⁶ ₂or COOR⁶,
with the provisos that A is not unsubstituted naphthyl; and if A is unsubstituted phenyl,
R²is —COOR¹or —CONR⁷R⁸, R¹is C_2-4-alkyl, and R⁵is isopropyl or tert-butyl.

The invention also relates to compounds of Formula III
wherein

R¹is H or C_1-4-alkyl;
R³is —COOR¹, —CONR⁷R⁸, or —CH₂NHR⁹;
R⁵is C_3-5-alkyl;
R⁶is C_1-6-alkyl;
R⁷is H;
R⁸is methyl;
R⁹is hydrogen, methyl or —CO—R¹⁰; and
R¹⁰is hydrogen or methyl optionally substituted by NR⁶ ₂or COOR⁶,
with the provisos that:
- (a) A is not unsubstituted naphthyl;
- (b) if A is unsubstituted phenyl, then R³is —COOR¹or —CONR⁷R⁸, and R⁵is isopropyl or tert-butyl; and
- (c) if R⁵is isopropyl, then A is not phenyl substituted by halogen, or —OR¹.

The invention further relates to compounds of Formula IV
wherein

R¹is H or C_1-4-alkyl;
R²is —COOR¹, —CONR⁷R⁸, or —CH₂NHR⁹;
R⁵is C_3-5-alkyl;
R⁶is C_1-6-alkyl;
R⁷is H;
R⁸is methyl;
R⁹is hydrogen; methyl or —CO—R¹⁰; and
R¹⁰is hydrogen or methyl optionally substituted by NR⁶ ₂or COOR⁶,
with the proviso that if A is unsubstituted phenyl, R²is COOR¹or —CONR⁷R⁸, R¹is C_2-4-alkyl, and R⁵is isopropyl or tert-butyl.

The invention further includes compounds of Formula V
wherein

R¹is H or C_1-4-alkyl;
R²is —COOR¹, —CONR⁷R⁸, or —CH₂NHR⁹;
R⁵is C_3-5-alkyl;
R⁶is C_1-6-alkyl;
R⁷is H;
R⁸is methyl;
R⁹is hydrogen, methyl or —CO—R¹⁰; and
R¹⁰is hydrogen or methyl optionally substituted by NR⁶ ₂or COOR⁶.

The present invention is also directed to pharmaceutically acceptable salts of Formula I. Suitable pharmaceutically acceptable salts are well known to those skilled in the art and include basic salts of inorganic and organic acids, such as hydrochloric acid, hydrobromic acid, sulphuric acid, phosphoric acid, methanesulphonic acid, sulphonic acid, acetic acid, trifluoroacetic acid, malic acid, tartaric acid, citric acid, lactic acid, oxalic acid, succinic acid, fumaric acid, maleic acid, benzoic acid, salicylic acid, phenylacetic acid, and mandelic acid. In addition, pharmaceutically acceptable salts of Formula I may be formed with a pharmaceutically acceptable cation, for instance, in the case when a substituent group comprises a carboxy moiety. Suitable pharmaceutically suitable cations are well known to those skilled in the art, and include alkaline cations (such as Li⁺ Na⁺ or K⁺), alkaline earth cations (such as Mg⁺²; Ca⁺²or Ba⁺²), the ammonium cation, and organic cations, including aliphatic and aromatic substituted ammonium, and quaternary ammonium cations such as those arising from triethylamine, N,N-diethylamine, N,N-dicyclohexylamine, pyridine, N,N-dimethylaminopyridine, 1,4-diazabicyclo[2.2.2]octane (DABCO), 1,5-diazabicyclo[4.3.0]non-5-ene (DBN) and 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU).
The compounds of Formulae I-V are either known in the art or may be prepared by use of known chemical reactions and procedures. Nevertheless, the following general preparative methods are presented to aid one of skill in the art in synthesizing the inhibitors of the invention, with more detailed particular examples being presented in the experimental section.

General Preparative Methods

Methyl 5-alkyl-3-aminothiophene-2-carboxylates may be generated by the reaction of methyl thioglycolate with 2-alkyl-2-chloroacrylonitrile in the presence of a base, preferably NaOMe (Ishizaki et al. JP 6025221; Method A). Urea formation may involve either treatment of the thus formed amine with an isocyanate, or an isocyanate equivalent (Method A), or the conversion of the amine into an isocyanate or an isocyanate equivalent by treatment with phosgene or a phosgene, equivalent, followed by reaction with a second amine (Method B).
If one or more of the aryl groups is substituted with NO₂, or its equivalent, this moiety may be reduced either using catalytic hydrogenation, eg. with H₂and palladium-on-carbon, or using a hydride reagent, eg. KBH₄with CuCl, to give the corresponding amine (Method C).
Transesterification of the urea may undertaken in alcohol solvent using a Lewis acid catalyst, eg. titanium alkoxide, (Method D).
Alternatively, protection of the amine, eg. as the tert-butyl carbamate, followed by saponification of the ester affords the corresponding amino-protected carboxylic acid (Method E). Ester formation may employ one of a wide variety of standard protocols, eg. carbodiimide-mediated coupling, depending on the amine protecting group. Finally, deprotection, for example using an acid source such as HCl or trifluoroacetic acid for the tert-butyl carbamate, followed by urea formation, as illustrated in either Method A or Method B, will generate ester analogues.
Amide analogues may be generated in a manner similar to that disclosed in Method E. Protection of the amine, eg. as the benzyl carbamate, followed by amide formation, eg. using an amine in the presence of catalytic cyanide, gives the protected amide (Method F). Deprotection, for example with HBr/acetic acid or catalytic hydrogenation for the benzyl carbamate, followed by urea formation as illustrated in Method A will generate amide analogues.
Saponification of 3-aminothiophene-2-carboxylate esters (eg. with KOH) affords the carboxylic acid, which on treatment with phosgene or a phosgene equivalent gives the 2H-thieno[3,2-d]oxazine-2,4(1H)-dione (Method R). Reaction of the thienooxazine with an aryl amine then affords the substituted 2-carboxythienyl urea. Activation, eg. with SOCl₂, followed by treatment with an alcohol affords the corresponding ester. Alternately, treatment of the activated intermediate with a primary or secondary amine affords the corresponding amide.
Amide analogues may also be generated by direct treatment of the methyl ester with an aluminum amide (Method G), followed by urea formation as illustrated in Method A.
Generation of carboxylic acid analogues may be achieved by hydrolysis of the corresponding esters. For example, catalytic hydrogenation of the C-2 benzyl ester, eg. using H₂and palladium-on-carbon, provides the thiophene-2-carboxylic acid (Method H).
Ureas containing primary amides may be reduced to the aminomethyl analogues using, for example a BH₃.THF solution (Method I). The thus generated amine may then be functionalized as desired. Amide formation may be achieved using acid chlorides or their equivalent, or through standard coupling protocols. For example, the amine may be coupled with an amino-protected glycine, eg. N—BOC-glycine, in the presence of a carbodiimide catalyst, eg. DCC, followed by standard removal of the protecting group, for example using an acid source such as HCl or trifluoroacetic acid for the tert-butyl carbamate (Method I).
Suitable amines (A-NH₂with A as in Formulae I-V) may be commercially available, or may be generated through any amine forming reaction, such as use of any variation of the Schmidt rearrangement. Thus, for example, a carboxylic acid may be treated with a phosgene equivalent, such as ethyl chloroformate, and an azide source to generate the isocyanate (Method J). The isocyanate may be treated with water to afford the corresponding amine, or directly reacted with a second amine to afford a urea (Method J).
Lithiation of 2-alkylfurans, using for example n-BuLi, followed by quenching of the 2-furyllithium with CO₂affords the furan-2-carboxylic acid (Method K). Dianion formation, using for example n-BuLi, followed by reaction with tosyl azide, then treatment with a diazomethane equivalent gives the azido ester. Finally, furan analogues of methyl 5-alkyl-3-aminothiophene-2-carboxylates may be generated by reduction of the azide, for example with H₂and palladium-on-carbon (Method K). The aminofuran analogues may be converted into ureas in a similar manner to that illustrated in either Method A or Method B.
5-Alkyl-3-aminofuran-2-carboxylate esters may also be generated by the reaction of methyl glycolate with 2-alkyl-2-chloroacrylonitrile in the presence of a base (Method L-1). Alternatively, 5-alkyl-3-aminofuran-2-carboxylate esters may be generated from α-cyanoketones (Method L-2). For example, treatment of an α-cyanoketones with an alkyl glycolate under Mitsunobu conditions (eg. triphenylphosphine and a dialkyl azodicarboxylate) affords the β-cyano enol ether. Treatment of the enol ether with a suitable base, such as KOBu-t, NaH, or 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU), then generates the desired aminofuran. Aminofuran analogues may be converted into ureas in a similar manner to that illustrated in either Method A or Method B.
Amide analogues of aminofurancarboxylic acids may be generated by direct treatment of the methyl ester (from L-1 or L-2) with an aluminum amide (Method M), followed by urea formation as illustrated in Method A.
Esterification of pyrrole-2-carboxylic acid followed by Friedel-Crafts alkylation affords the 5-alkyl analogue (Method N-1). Electrophilic nitration of the pyrrole with nitric acid in sulfuric acid affords a separable mixture of the 3-nitro compound shown below and the 3,4-dinitro analogue (Method N-1). Reduction of the nitro group, for example using hydrogen and palladium-on-carbon, affords the amine, which may be converted into the urea in a manner similar to that illustrated in Method B (Method N-1), or on treatment with an isocyanate (Method N-2).
As shown in Method N-3, amide analogues of pyrroles may be generated by conversion of the 5-alkyl-3-nitropyrrole-2-carboxylic acid into the corresponding amide using standard coupling conditions (eg. 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide, EDCI), followed by reduction of the nitro group and urea formation, as illustrated in Methods N-1 and N-2.
The 3-nitropyrrole generated in Method N-1 may also be treated with alkylating agents to form the N-alkyl-3-nitropyrrole (Method O). Reduction of the nitro moiety and urea formation proceed in a manner similar to that illustrated in Method N-1.
Methyl 5-tert-butyl-2-aminothiophene-3-carboxylates may be generated by the reaction of methyl cyanoacetate with 3,3-dimethylbutyraldehyde in the presence of elemental sulfur (Gewald et al. Chem. Ber. 1966, 99, 94; Method P). Urea formation may either involve treatment of the thus formed amine with an isocyanate, or an isocyanate equivalent (Method P), or the convertion of the amine into an isocyanate or an isocyanate equivalent by treatment with phosgene (Method Q) or a phosgene equivalent (Methods S and T), followed by reaction with a second amine.
Similarly, formation of the 3-carbamoyl-2-thienylazmine followed by treatment with an isocyanate affords the corresponding urea (Method U).
The invention also includes pharmaceutical compositions including a compound of Formulae I-V, and a physiologically acceptable carrier.
The compounds may be administered orally, topically, parenterally, by inhalation or spray or rectally in dosage unit formulations. The term ‘administration by injection’ includes intravenous, intramuscular, subcutaneous and parenteral injections, as well as use of infusion techniques. One or more compounds may be present in association with one or more non-toxic pharmaceutically acceptable carriers and if desired other active ingredients.
Compositions intended for oral use may be prepared according to any suitable method known to the art for the manufacture of pharmaceutical compositions. Such compositions may contain one or more agents selected from the group consisting of diluents, sweetening agents, flavoring agents, coloring agents and preserving agents in order to provide palatable preparations. Tablets contain the active ingredient in admixture with non-toxic pharmaceutically acceptable excipients which are suitable for the manufacture of tablets. These excipients may be, for example, inert diluents, such as calcium carbonate, sodium carbonate, lactose, calcium phosphate or sodium phosphate; granulating and disintegrating agents, for example, corn starch, or alginic acid; and binding agents, for example magnesium stearate, stearic acid or talc. The tablets may be uncoated or they may be coated by known techniques to delay disintegration and adsorption in the gastrointestinal tract and thereby provide a sustained action over a longer period. For example, a time delay material such as glyceryl monostearate or glyceryl distearate may be employed. These compounds may also be prepared in solid, rapidly released form.
Formulations for oral use may also be presented as hard gelatin capsules wherein the active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, calcium phosphate or kaolin, or as soft gelatin capsules wherein the active ingredient is mixed with water or an oil medium, for example peanut oil, liquid paraffin or olive oil.
Aqueous suspensions containing the active materials in admixture with excipients suitable for the manufacture of aqueous suspensions may also be used. Such excipients are suspending agents, for example sodium carboxymethylcellulose, methylcellulose, hydroxypropyl-methylcellulose, sodium alginate, polyvinylpyrrolidone, gum tragacanth and gum acacia; dispersing or wetting agents may be a naturally-occurring phosphatide, for example, lecithin, or condensation products of an alkylene oxide with fatty acids, for example polyoxyethylene stearate, or condensation products of ethylene oxide with long chain aliphatic alcohols, for example heptadecaethyleneoxycetanol, or condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol such as polyoxyethylene sorbitol monooleate, or condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol anhydrides, for example polyethylene sorbitan monooleate. The aqueous, suspensions may also contain one or more preservatives, for example ethyl, or n-propyl, p-hydroxybenzoate, one or more coloring agents, one or more flavoring agents, and one or more sweetening agents, such as sucrose or saccharin.
Dispersible powders and granules suitable for preparation of an aqueous suspension by the addition of water provide the active ingredient in admixture with a dispersing or wetting agent, suspending agent and one or more preservatives. Suitable dispersing or wetting agents and suspending agents are exemplified by those already mentioned above. Additional excipients, for example, sweetening, flavoring and coloring agents, may also be present.
The compounds may also be in the form of non-aqueous liquid formulations, e.g., oily suspensions which may be formulated by suspending the active ingredients in a vegetable oil, for example arachis oil, olive oil, sesame oil or peanut oil, or in a mineral oil such as liquid paraffin. The oily suspensions may contain a thickening agent, for example beeswax, hard paraffin or cetyl alcohol. Sweetening agents such as those set forth above, and flavoring agents may be added to provide palatable oral preparations. These compositions may be preserved by the addition of an anti-oxidant such as ascorbic acid.
Pharmaceutical compositions of the invention may also be in the form of oil-in-water emulsions. The oil phase may be a vegetable oil, for example olive oil or arachis oil, or a mineral oil, for example liquid paraffin or mixtures of these. Suitable emulsifying agents may be naturally-occurring gums, for example gum acacia or gum tragacanth, naturally-occurring phosphatides, for example soy bean, lecithin, and esters or partial esters derived from fatty acids and hexitol anhydrides, for example sorbitan monooleate, and condensation products of the said partial esters with ethylene oxide, for example polyoxyethylene sorbitan monooleate. The emulsions may also contain sweetening and flavoring agents.
Syrups and elixirs may be formulated with sweetening agents, for example glycerol, propylene glycol, sorbitol or sucrose. Such formulations may also contain a demulcent, a preservative and flavoring and coloring agents.
The compounds may also be administered in the form of suppositories for rectal administration of the drug. These compositions can be prepared by mixing the drug with a suitable non-irritating excipient which is solid at ordinary temperatures but liquid at the rectal temperature and will therefore melt in the rectum to release the drug. Such materials include cocoa butter and polyethylene glycols.
For all regimens of use disclosed herein for compounds of Formulae I-V, the daily oral dosage regimen will preferably be from 0.01 to 200 mg/Kg of total body weight. The daily dosage for administration by injection, including intravenous, intramuscular, subcutaneous and parenteral injections, and use of infusion techniques will preferably be from 0.01 to 200 mg/Kg of total body weight. The daily rectal dosage regimen will preferably be from 0.01 to 200 mg/Kg of total body weight. The daily topical dosage regimen will preferably be from 0.1 to 200 mg administered between one to four times daily. The daily inhalation dosage regimen will preferably be from 0.01 to 10 mg/Kg of total body weight.
It will be appreciated by those skilled in the art that the particular method of administration will depend on a variety of factors, all of which are considered routinely when administering therapeutics. It will also be appreciated by one skilled in the art that the specific dose level for a given patient depends on a variety of factors, including specific activity of the compound administered, age, body weight, health, sex, diet, time and route of administration, rate of excretion, etc. It will be further appreciated by one skilled in the art that the optimal course of treatment, ie, the mode of treatment and the daily number of doses of a compound of Formulae I-V or a pharmaceutically acceptable salt thereof given for a defined number of days, can be ascertained by those skilled in the art using conventional course of treatment tests.
The entire enclosure of all applications, patents and publications cited above and below are hereby incorporated by reference.
The following examples are for illustrative purposes only and are not intended, nor should they be construed to limit the invention in any way.

EXAMPLES

All reactions were performed in flame-dried or oven-dried glassware under a positive pressure of dry argon or dry nitrogen, and were stirred magnetically unless otherwise indicated. Sensitive liquids and solutions were transferred via syringe or cannula, and introduced into reaction vessels through rubber septa. Unless otherwise stated, the term concentration under reduced pressure refers to use of a Buchi rotary evaporator at approximately 15 mmHg. Bulb-to-bulb concentrations were conducted using an Aldrich Kugelrohr apparatus, and in these cases temperatures refer to oven temperatures.
All temperatures are reported uncorrected in degrees Celcius (° C.). Unless otherwise indicated, all parts and percentages are by volume.
Commercial grade reagents and solvents were used without further purification, except that tetrahydrofuran (THF) and, 1,2-dimethoxyethane (DME) were doubly distilled from potassium, diethyl ether was distilled from sodium benzophenone ketyl, and CH₂Cl₂was distilled from CaH₂.
Thin-layer chromatography (TLC) was performed on Whatman® pre-coated glass-backed silica gel 60A F-254 250 μm plates. Visualization of plates was effected by one or more of the following techniques: (a) ultraviolet illumination, (b) exposure to iodine vapor, (c) immersion of the plate in a 10% solution of phosphomolybdic acid in ethanol followed by heating, (d) immersion of the plate in a cerium sulfate solution followed by heating, and/or (e) immersion of the plate in an acidic ethanol solution of 2,4-dinitrophenylhydrazine followed by heating. Column chromatography (flash chromatography) was performed using 230-400 mesh EM Science® silica gel. Rotary chromatography was performed using pre-cast SiO₂plates (Alltech®) on a Harrison Research Chromatotron.
Melting points (mp) were determined using a Thomas-Hoover melting point apparatus or a Mettler FP66 automated melting point apparatus and are uncorrected. Fourier transform infrared sprectra were obtained using a Mattson 4020 Galaxy Series spectrophotometer. Proton (¹H) nuclear magnetic resonance (NMR) spectra were measured with a General Electric GN-Omega 300 (300 MHz) spectrometer with either Me₄Si (d 0.00) or residual protonated solvent (CHCl₃δ 7.26; MeOH δ 3.30; DMSO δ 2.49) as standard. Carbon (¹³C) NMR spectra were measured with a General Electric GN-Omega 300 (75 MHz) spectrometer with solvent (CDCl₃δ 77.0; MeOD-d₃; δ 49.0; DMSO-d₆δ 39.5) as standard. Low resolution mass spectra (MS) and high resolution mass spectra (HRMS) were either obtained as electron impact (EI) mass spectra or as fast atom bombardment (FAB) mass spectra. Electron impact mass spectra (EI-MS) were obtained with a Hewlett Packard 5989A mass spectrometer equipped with a Vacumetrics Desorption Chemical Ionization Probe for sample introduction. The ion source was maintained at 250° C. Electron impact ionization was performed with electron energy of 70 eV and a trap current of 300 μA. Liquid-cesium secondary ion mass spectra (FAB-MS), an updated version of fast atom bombardment were obtained using a Kratos Concept 1-H spectrometer. Chemical ionization mass spectra (CI-MS) were obtained using a Hewlett Packard MS-Engine (5989A) with methane or ammonia as the reagent gas (1×10⁻⁴torr to 2.5×10⁻⁴torr). The direct insertion desorption chemical ionization (DCI) probe (Vacuumetrics, Inc.) was ramped from 0-1.5 amps in 10 sec and held at 10 amps until all traces of the sample disappeared (˜1-2 min). Spectra were scanned from 50-800 amu at 2 sec per scan. HPLC-electrospray mass spectra (HPLC ES-MS) were obtained using a Hewlett-Packard 1100 HPLC equipped with a quaternary pump, a variable wavelength detector, a C-18 column, and a Finnigan LCQ ion trap mass spectrometer with electrospray ionization. Spectra were scanned from 120-800 amu using a variable ion time according to the number of ions in the source. Gas chromatography-ion selective mass spectra (GC-MS) were obtained with a Hewlett Packard 5890 gas chromatograph equipped with an HP-1 methyl silicone column (0.33 mM coating; 25 m×0.2 min) and a Hewlett Packard 5971 Mass Selective Detector (ionization energy 70 eV). Elemental analyses are conducted by Robertson Microlit Labs, Madison N.J.
All compounds displayed NMR spectra, LRMS and either elemental analysis or HRMS consistant with assigned structures.

LIST OF ABBREVIATIONS AND ACRONYMS

AcOH acetic acid
CI chemical ionization
DMAP 4-(N,N-dimethylamino)pyridine
DMF N,N-dimethylformamide
DME 1,2-dimethoxyethane
DMSO dimethyl sulfoxide
EDCI 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide
EI electron impact
Et₃N triethylamine
Et₂O diethyl ether
EtOAc ethyl acetate
EtOH ethanol
FAB fast atom bombardment
GC-MS gas chromatography mass spectrum
hex n-hexane
FTIR Fourier transform infrared
HPLC ES-MS high pressure liquid chromatography electrospray mass spectrum
HRMS high resolution mass spectrum
KOAc potassium acetate
LRMS low resolution mass spectrum
MeOH methanol
NaOMe sodium methoxide
pet. ether petroleum ether (boiling range 30-60° C.)
THF tetrahydrofuran
Ti(OEt)₄tetraethoxytitanium(V)
TMSCl trimethylsilyl chloride
TLC thin layer chromatography
TMSCHN₂(trimethylsilyl)diazomethane

General Methods for the Synthesis of Urido Heterocycles

Method A

Synthesis of N-(2-carbomethoxy-5-isopropyl-3-thienyl)-N′-(phenyl)urea (Example 1)

Step 1

To a solution of NaOMe (14 g) in MeOH (1 L) was added methyl thioglycolate (22.3 mL). The mixture was stirred for 5 min, then a solution of 3-chloro-4-methyl-2-pentenenitrile (32.4 g) in MeOH (200 mL) was added and the solution was heated at the reflux temp. for 90 min. After cooling to 20° C., the mixture was concentrated under reduced pressure. The residue was dissolved in EtOAc, washed with a 1N HCl solution, dried (MgSO₄), and concentrated under reduced pressure. The residue was purified by flash chromatography (EtOAc/hexane) to yield methyl 3-amino-5-isopropylthiophene-2-carboxylate-(8.0 g, 16%).

Step 2

To a solution of methyl 3-amino-5-isopropylthiophene-2-carboxylate (0.050 g, 0.25 mmol) in toluene (1 mL) was added phenyl isocyanate (0.024 mL, 0.25 mmol, 1.0 equiv) and the resulting mixture was heated at the reflux temp. for 6 h, then cooled to 20° C. during which N-(2-carbomethoxy-5-isopropyl-3-thienyl)-N (phenyl)urea crystallized from solution (0.014 g, 18%): mp 108-10° C.; ¹H NMR (CDCl₃) δ 1.3 (d, 6H), 3.1 (m, 1H), 3.8 (s, 3H), 6.7 (br s, 1H), 7.2 (m, 1H), 7.3 (m, 3H), 7.83 (s, 1H); EI-LRMS m/z 318 (M^+).

Selected Compound Synthesized Using Method A

N-(2-Carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (Example 5): mp 124-6° C.; ¹H NMR (CDCl₃) δ 1.34 (s, 9H), 2.30 (s, 3H), 3.76 (s, 3H), 7.12 (d, J=8.5 Hz, 2H), 7.29 (d, J=8.5 Hz, 2H), 7.48 (br s, 1H), 7.87 (s, 1H), 9.67 (s, 1H); ¹³C NMR (CDCl₃) δ 20.8, 31.7 (3C), 35.2, 51.6, 104.9, 117.2, 121.4 (2C), 129.7 (2C), 134.0, 135.1, 145.9, 152.2, 164.4, 165.0.

Method B

Synthesis of N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-fluorophenyl)urea (Example 54)

Step 1

To a solution of phosgene (1.93M in toluene, 7.9 mL, 15.2 mmol, 3.0 equiv) in CH₂Cl₂(100 mL) at 0° C. was added a solution of methyl 3-amino-5-tert-butylthiophene-2-carboxylate (1.08 g, 5.07 mmol): and pyridine (1.6 mL, 20.3 mmol, 4.0 equiv) in CH₂Cl₂(30 mL). The reaction mixture was allowed to slowly warm to room temp. and was stirred at that temp. for 30 min. The resulting slurry was concentrated under reduced pressure to give a mixture of 2-carbomethoxy-5-tert-butyl-3-thienyl isocyanate and pyridinium hydrochloride as a yellow solid. 2-Carbomethoxy-5-tert-butyl-3-thienyl isocyanate: ¹H NMR (CDCl₃) δ 1.36 (s, 9H), 3.89 (s, 3H), 6.55 (s, 1H). The mixture was used in the next step without further purification.

Step 2

The 2-carbomethoxy-5-tert-butyl-3-thienyl isocyanate prepared in Method B, Step 1 was dissolved in anh. THF (100 mL). 4-Fluoroaniline (1.13 g, 10.1 mmol, 2.0 equiv) was added and the resulting solution was stirred at room temp. for 14 h. The resulting mixture was diluted with CHCl₃(200 mL) then washed with a 1N HCl solution (2×100 mL) and a saturated NaCl solution (100 mL). The combined aqueous layers were back-extracted with CHCl₃(100 mL). The combined organic layers were dried (Na₂SO₄) and concentrated under reduced pressure to give a yellow-brown solid (1.61 g), which was recrystallized (CH₂Cl₂) to give N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-fluorophenyl)urea as a white solid (1.34 g, 75% over 2 steps): mp 160-2° C.; TLC (20% EtOAc/hexane) R_f0.45; ¹H NMR (CDCl₃) δ 1.33 (s, 9H), 3.77 (s, 3H), 7.01 (dd, J=8.8, 8.5 Hz, 2H), 7.34-7.39 (m, 2H), 7.49 (s, 1H), 7.82 (s, 1H), 9.68 (s, 1H); ¹³C NMR (CDCl₃) δ 31.7 (3C), 35.2, 51.6, 105.1, 115.9 (d, J_C-F=22.0 Hz, 2C), 117.1, 123.2 (d, J_C-F=7.3 Hz, 2C), 133.7 (d, J_C-F=2.4 Hz, 1C), 145.8, 148.6, 152.2, 159.6 (d, J_C-F=244.1 Hz, 1C), 164.7, 165.1; FAB-LRMS m/z (rel abundance) 351 (M+H, 33%).

Selected Compounds Synthesized Using Method B

N-(2-Carbomethoxy-5-tert-butyl-3-thienyl)-N′-(3-methylphenyl)urea (Example 9): mp 70-2° C.; ¹H NMR (CDCl₃) δ 1.4 (s, 9H), 2.4 (s, 3H), 3.8 (s, 3H), 6.75 (br s, 1H), 6.95 (d, 1H), 7.2-7.3 (m, 3H), 7.8 (s, 1H), 7.7 (s, 1H); FAB-LRMS m/z (rel abundance) 347 (M+H, 56%).
N-(2-Carbomethoxy-5-tert-butyl-3-thienyl)-N′-(5-cyclopropyl-2-thiadiazolyl)urea (Example 16): ¹H NMR (CDCl₃) δ 1.20-1.40 (m, 4H), 1.40 (s, 9H), 2.25-2.35 (m, 1H), 3.80 (s, 3H), 7.75 (s, 1H), 10.00 s, 1H); FAB-LRMS m/z (rel abundance) 381 (M+H, 18%).

Method C

Synthesis of N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(2-aminophenyl)urea (Example 11)

N-(2-Carbomethoxy-5-tert-butyl-3-thienyl)-N′-(2-nitrophenyl)urea was synthesized in a manner analogous to that described in Method B.
A slurry of N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(2-nitrophenyl)urea (0.078 g, 0.21 mmol) and 10% Pd/C (0.010 g) in MeOH (15 mL) was stirred under H₂(1 atm.) for 18 h at 20° C. Celite® was added and the slurry was filtered. The resulting solution was concentrated under reduced pressure and the residue was purified by flash chromatography (gradient from 20% EtOAc/hexane to 50% EtOAc/hexane) to afford N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(2-aminophenyl)urea as a foam (0.060 g, 83%): ¹H NMR (CDCl₃, partial spectrum) δ 1.4 (s, 9H), 3.6 (s, 3H), 6.8-7.3 (m, 4H), 7.8 (s, 1H), 9.6 (s, 1H); FAB-LRMS m/z (rel abundance) 348 (M+H, 34%).

Method D

Synthesis of N-(2-carboethoxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (Example 6)

A solution of Ti(OEt), (0.10 mL, 0.476 mmol, 11.8 equiv), N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.014 g, 0.040 mmol), and EtOH (10 mL) was heated at the reflux temp. for 36 h. The resulting mixture was filtered and the filtrate was concentrated under reduced pressure. The residual oil was dissolved in EtOAc and purified by flash chromatography (gradient from 10% EtOAc/hexane to 20% EtOAc/hexane) to afford N-(2-carboethoxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.0086 g, 59%): ¹H NMR (CDCl₃) δ 1.30 (d, J=7.4 Hz, 3H), 1.35 (s, 9H), 2.30 (s, 3H), 4.24 (q, J=7.4 Hz, 2H), 7.11 (d, J=8.5 Hz, 2H), 7.29 (d, J=8.5 Hz, 2H), 7.30 (br s, 1H), 7.86 (s, 1H), 9.68 (s, 1H); ¹³C NMR (CDCl₃) δ 14.3, 20.8, 31.8 (3C), 35.2, 60.6, 105.1, 117.2, 121.0 (2C), 129.7 (2C), 133.8, 135.2, 145.9, 152.1, 164.2, 164.8.

Method E

Synthesis of N-(2-(carbo-1-prop-2-enyloxy)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (Example 8)

Step 1

To a solution of methyl 3-amino-5-tert-butylthiophene-2-carboxylate (10.0 g, 47 mmol) and DMAP (6.57 g, 47 mmol, 1.0 equiv) in pyridine (188 mL) at 0° C. was added di-tert-butyl dicarbonate (11.3 g, 51.7 mmol, 1.1 equiv). The pyridine solution was allowed to warm to room temp. and was stirred for 6 d. The resulting mixture was concentrated under reduced pressure to yield an orange solid, which was separated between CH₂Cl₂(250 mL) and a 1M H₃PO₄solution (100 mL). The organic phase was washed with a saturated NaHCO₃solution (100 mL) and a saturated NaCl solution (100 mL), dried (MgSO₄) and concentrated under reduced pressure. The resulting light orange solid was recrystallized (EtOH/H₂O) to give methyl 3-(N-carbo-tert-butoxyamino)-5-tert-butylthiophene-2-carboxylate as an off-white solid (12.00 g, 82%): TLC (10% EtOAc) R_f0.65; ¹H NMR (CDCl₃) δ 1.38 (s, 9H), 1.51 (s, 9H), 3.84 (s, 3H), 7.68 (s, 1H) 9.35 (s, 1H); ¹³C NMR (CDCl₃) δ 28.6 (3C), 32.0 (3C), 35.4, 51.8, 81.1, 105.2, 116.6, 145.7, 152.4, 164.5, 165.0.

Step 2

To a solution of methyl 3-(N-carbo-tert-butoxyamino)-5-tert-butylthiophene-2-carboxylate (10.7 g, 34.1 mmol) in a 2:1:1 mixture of THF, MeOH and HO (340 mL) was added NaOH (4.09 g, 102.3 mmol, 3.0 equiv). The resulting solution was heated at 60° C. for 18 h, cooled to room temp. and concentrated under reduced pressure. The residue was separated between H₂O (500 mL) and EtOAc (250 mL). The aqueous phase was adjusted to pH 2 with a 10% HCl solution, then extracted with EtOAc (2×400 mL). The organic phase was washed with a saturated NaCl solution (250 mL), dried (MgSO₄), and concentrated under reduced pressure to afford 3-(N-carbo-tert-butoxyamino)-5-tert-butylthiophene-2-carboxylic acid as an orange solid (6.6 g, 65%). This material was used in the next step without further purification. An analytical sample of the carboxylic acid was further purified: mp 187-8° C., TLC (10% MeOH/CH₂Cl₂) R_f0.17; ¹H NMR (CDCl₃) δ 1.40 (s, 9H), 1.54 (s, 9H), 7.73 (s, 1H), 9.19 (s, 1H); ¹³C NMR (CDCl₃) δ 28.2 (3C), 31.8 (3C), 35.4, 81.3, 104.6, 116.7, 146.7, 151.9, 166.6, 169.3; FAB-LRMS m/z (rel abundance) 300 (M+H, 30%).

Step 3

To a solution of 3-(N-carbo-tert-butoxyamino)-5-tert-butylthiophene-2-carboxylic acid (0.20 g, 0.67 mmol), allyl alcohol (0.042 g, 0.73 mmol, 1.1 equiv) and DMAP (0.008 g, 0.07 mmol, 10 mol %) in CH₂Cl₂(2 mL) was added EDCI.HCl (0.14 g, 0.73 mmol, 1.1 equiv). The CH₂Cl₂mixture was stirred at room temp. for 3 d, diluted with CH₂Cl₂, washed with a 1N HCl solution (5 mL) and a saturated NaHCO₃solution (3 mL), dried (Na₂SO₄), and concentrated under reduced pressure to afford allyl 3-(N-carbo-tert-butoxyamino)-5-tert-butylthiophene-2-carboxylate (0.15 g, 65%) as a colorless oil: TLC (50% CH₂Cl₂/hexane) R_f0.63; ¹H NMR (CDCl₃) δ 1.37 (s, 9H), 1.50 (s, 9H), 4.74 (ddd, J=5.5, 1.5, 1.5 Hz, 2H), 5.26 (dd, J=10.3, 1.5 Hz, 1H), 5.37 (dd, J=17.3, 1.5 Hz, 1H), 5.87-5.98 (m, 1H), 7.68, 9.35; ¹³C NMR (CDCl₃) δ 28.2 (3C), 31.8 (3C), 35.2, 64.9, 80.8, 104.9, 116.4, 118.1, 132.0, 145.6, 152.1, 164.0, 164.4

Step 4

Allyl 3-(N-carbo-tert-butoxyamino)-5-tert-butylthiophene-2-carboxylate (0.14 g, 0.41 mmol) was dissolved in solution of HCl in dioxane (4N, 11.0 mL, 4.1 mmol, 10 equiv). The resulting solution was stirred at room temp. for 5 d, diluted with CHCl₃(5 mL), washed with a 1N HCl solution (5 mL) and a saturated NaCl solution (5 mL), dried (Na₂SO₄), and concentrated under reduced pressure. The residue was filtered-through a plug of SiO₂with the aid of a 10% EtOAc/CH₂Cl₂solution to give allyl 3-amino-5-tert-butylthiophene-2-carboxylate as a yellow oil (0.088 g, 95%): ¹H NMR (CDCl₃) δ 1.32 (s, 9H), 4.72 (ddd, J=4.1, 1.5, 1.5 Hz, 2H), 5.21 (ddd, J=10.3, 2.9, 1.5 Hz, 1H), 5.36 (ddd, J=17.3, 3.1, 1.5, 1H), 5.42 (br s, 2H), 5.92-6.03 (m, 1H), 6.34 (s, 1H). This material was used without further purification.

Step 5

To a solution of allyl 3-amino-5-tert-butylthiophene-2-carboxylate (0.088 g, 0.39 mmol) and pyridine (0.12 g, 1.56 mmol, 4.0 equiv) in CH₂Cl₂(4 mL) at 0° C. was added a solution of phosgene in toluene (1.93M, 0.6 mL, 1.17 mmol, 3.0 equiv). The reaction was allowed to slowly warm to room temp. and stirred for 2 h. The resulting mixture was concentrated under reduced pressure. The residue was dissolved in anh. THF (4 mL), 4-methylaniline (0.083 g, 0.78 mmol, 2.0 equiv) was added, and the resulting solution was stirred at room temp. for 14 h. The THF mixture was diluted with CHCl₃(10 mL) and the resulting solution was washed with a 1N HCl solution (10 mL) and concentrated under reduced pressure. The residue was purified by flash chromatography (gradient from hexane to 10% EtOAc/hexane) to give N-(2-carbo-1-prop-2-enyloxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea as a white, solid (0.087 g, 60%): mp 52-62° C., TLC (10% EtOAc/hexane) R_f0.34; ¹H NMR (CDCl₃) δ 1.36 (s, 9H), 2.32 (s, 3H), 4.69 (app dt, J=5.5, 1.5 Hz, 2H), 5.25 (dd, J=10.3, 1.5 Hz, 1H), 5.35 (dd, J=16.9, 1.5 Hz, 1H), 5.87-5.98 (m, 1H), 7.13 (d, J=8.0 Hz, 2H), 7.30 (d, J=8.5 Hz, 2H), 7.88 (s, 1H), 9.68 (s, 1H); ¹³C NMR (CDCl₃) δ 20.8, 31.7 (3C), 35.2, 65.0, 104.9, 117.2, 118.2, 121.3 (2C), 129.7 (2C), 131.9, 134.0, 135.0, 146.1, 151.2, 164.3, 165.6; FAB-LRMS m/z (rel abundance) 373 (M+H, 13%).

Selected Compounds Synthesized Using Method E

N-(2-(Carbo-2-propyloxy)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (Example 7): mp 72-86° C., TLC (10% EtOAc/hexane) R_f0.34; ¹H NMR (CDCl₃) δ 1.28 (d, J=6.3 Hz, 3H), 1.35 (s, 9H), 2.31 (s, 3H), 5.11 (sept, J=6.3 Hz, 1H), 7.11 (d, J=8.1 Hz, 2H), 7.28 (d, J=8.1 Hz; 2H), 7.85 (s, 1H), 9.76 (s, 1); ¹³C NMR (CDCl₃) δ 20.8, 21.9 (2C), 31.8 (3C), 35.2, 68.2, 105.6, 117.2, 121.2 (2C), 129.7 (2C), 133.8, 135.1, 145.7, 152.1, 163.9, 164.4; FAB-LRMS m/z (rel abundance) 375 (M+H, 70%).
N-(2-(Carbo-1-propyloxy)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (Example 53): mp 59-66° C., TLC (10% EtOAc/hexane) R_f0.38; ¹H NMR (CDCl₃) δ 0.96, (t, J=7.5 Hz, 3H), 1.35 (s, 9H), 1.69 (app hex, J=7.4 Hz, 2H), 2.31 (s, 3H), 4.14 (t, J=6.8 Hz, 2H), 7.11 (d, J=8.1 Hz, 2H), 7.29 (d, J=8.5 Hz, 2H), 7.86 (s, 1H), 9.71 (s, 1H); ¹³C NMR (CDCl₃) δ 10.3, 20.8, 22.0, 31.7 (3C), 35.2, 66.1, 105.3, 117.2, 121.2 (2C), 129.7 (2C), 133.9, 135.0, 145.7, 152.1, 164.2, 164.8; FAB-LRMS m/z (rel abundance) 375 (M+H, 36%).

Method F

Synthesis of N-(2-methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (Example 22)

Step 1

A solution of methyl 3-amino-5-tert-butylthiophene-2-carboxylate (20.0 g, 93.9 mmol), benzyl chloroformate (80.4 mL, 563 mmol), Na₂CO₃(1.10 g, 9.93 mmol), toluene (400 mL) and water (50 mL) was heated at the reflux temp. for 18 h. Volatiles were removed under reduced pressure. The resulting oil was dissolved in EtOAc, washed with water and a concentrated NaCl solution, dried (MgSO₄) and concentrated under reduced pressure to afford methyl 3-(N-carbobenzyloxyamino)-5-tert-butylthiophene-2-carboxylate as a crude oil in quantitative yield.

Step 2

To a saturated solution of methylamine in MeOH (200 mL) in a screw top vessel was added methyl 3-(N-carbobenzyloxyamino)-5-tert-butylthiophene-2-carboxylate (13.6 g, 39.2 mmol) and NaCN (0.98 g, 20 mmol). The vessel was sealed and the reaction mixture was heated to 50° C. for 8 h. The resulting solution was poured into water (500 mL) and extracted with EtOAc. The organic layer was washed with water and a concentrated NaCl solution, dried (Na₂SO₄), and concentrated under reduced pressure. The crude material was purified by flash chromatography (EtOAc/hexane) affording N-methyl-3-(N-carbobenzyloxyamino)-5-tert-butylthiophene-2-carboxamide (2.76 g, 20%).

Step 3

N-Methyl-3-(N-carbobenzyloxyamino)-5-tert-butylthiophene-2-carboxamide (2.76 g, 8 mmol) was dissolved in a 1:1 v/v solution of 48% HBr and AcOH (100 mL) and heated to 30° C. for 24 h. The acidic solution was cooled and adjusted to pH 4 with a saturated NaHCO₃solution. Methylamine (4 mL, 2M in THF) was added and the resulting mixture was extracted with CH₂Cl₂. The organic phase was concentrated under reduced pressure to afford N-methyl-3-amino-5-tert-butylthienyl-2-carboxamide (0.092 g, 54%).

Step 4

A solution of the N-methyl-3-amino-5-tert-butylthiophene-2-carboxamide (0.60 g, 2.83 mmol) and 4-methylphenyl isocyanate (0.36 mL, 2.83 mmol) in toluene (2 mL) was heated at the reflux temp. for 18 h. The resulting solution was concentrated under reduced pressure and the resulting solid was purified by flash chromatography (EtOAc/CH₂Cl₂) affording N-(2-methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.42 g, 44%): mp 202-4° C.; ¹H NMR (CDCl₃) δ 1.38 (s, 9H), 2.31 (s, 3H), 2.91 (d, J=4.9 Hz, 3H), 5.59 (bs, 1H), 7.11 (d, J=8.5 Hz, 2H), 7.29 (d, J=8.5 Hz, 2H), 7.90 (s, 1H), 10.53 (s, 1H).

Method G

Synthesis of N-(2-methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(4-fluorophenyl)urea (Example 25)

Step 1

A slurry of methylamine hydrochloride (9.51 g, 141 mmol, 3.1 equiv) in anh. toluene (600 mL) at 0° C. was treated with AlMe₃(2M in toluene, 70 mL, 141 mmol, 3.1 equiv) over 10 min. The resulting solution was stirred at 0° C. for 1 h then allowed to warm to room temp. and stirred for 40 min. Methyl 3-amino-5-tert-butylthiophene-2-carboxylate (9.87 g, 46 mmol) was added to the aluminum amide solution. The resulting mixture was heated at the reflux temp. for 3 d, cooled to 0° C., and a 6N HCl solution was added dropwise. The quenched mixture was made basic with a 20% KOH solution (95 mL). The resulting slurry was partitioned between H₂O (300 mL) and EtOAc (300 mL) and the aqueous layer was extracted with EtOAc (3×300 mL). The combined organic layers were dried (Na₂SO₄) and concentrated under reduced pressure to afford N-methyl-3-amino-5-tert-butylthiophene-2-carboxamide as a green-yellow solid (9.47 g, 97%): mp 230-1° C.; TLC (20% EtOAc/CH₂Cl₂) R_f0.23; ¹H NMR (d⁶-DMSO) δ 1.28 (s, 9H), 2.63 (d, J=4.8 Hz, 3H), 6.29 (br s, 2H), 6.37 (d, J=1.1 Hz, 1H), 7.22 (q, J=4.0 Hz, 1H).

Step 2

A slurry of N-methyl-3-amino-5-tert-butylthiophene-2-carboxamide (7.63 g, 36 mmol) and 4-fluorophenyl isocyanate (4.93 g, 36 mmol, 1.0 equiv) in anh. toluene (100 mL) was heated at the reflux temp. for 3 h, during which the mixture clarified then generated a new precipitate, which was filtered while hot. The resulting solids were washed with hexane and dried under reduced pressure to afford N-(2-methylcarbamoyl-5-tert-butylthienyl)-N′-(4-fluorophenyl)urea (10.2 g, 81%): mp 203-4° C.; TLC (5% MeOH/CH₂Cl₂) R_f0.61; ¹H NMR (CDCl₃) δ 1.34 (s, 9H), 2.73 (d, J=4.4 Hz, 3H), 7.07-7.13 (m, 2H), 7.49-7.54 (m, 2H), 7.80 (s, 1H), 7.96 (q, J=4.4 Hz, 1H), 9.88 (s, 1H), 10.46 (s, 1H); ¹³C NMR (CDCl₃) δ 25.8, 31.6 (3C), 34.5, 107.4, 115.2 (d, J_C-F=22.0 Hz, 2C), 117.3, 120.1 (d, J_C-F=7.3 Hz, 2C), 136.1 (d, J_C-F=2.4 Hz, 2C), 143.1, 151.6, 157.4 (d, J_C-F=238.1 Hz, 1C), 158.0, 164.3; EI-LRMS m/z (rel abundance) 349 (M⁺, 13%).

Selected Compounds Synthesized Using Method G

N-(2-Methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(4-ethylphenyl)urea (Example 23): mp 101-4° C., TLC (20% EtOAc.hexane) R_f0.18; ¹H NMR (CDCl₃) δ 1.20 (t, J=7.7 Hz, 3H), 1.20 (s, 9H), 2.59 (q, J=7.7 Hz, 2H), 2.88 (d, J=4.8 Hz, 3H), 5.64 (br d, J=4.4 Hz, 1H), 7.12 (d, J=8.1 Hz, 2H), 7.32 (d, J=8.5 Hz, 2H), 7.42 (br m, 1H), 7.90 (s, 1H), 10.54 (s, 1H) ¹³C NMR (CDCl₃) δ 15.6, 26.3, 28.2, 31.8 (3C), 35.0, 106.8, 118.1, 120.2 (2C), 128.3 (2C), 135.9, 139.5, 144.5, 152.1, 159.5, 165.6; FAB-LRMS m/z (rel abundance) 360 (M+H, 14%).
N-(2-Methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(4-isopropylphenyl)urea (Example 24): mp 113-20° C., TLC (20% EtOAc.hexane) R_f0.20; ¹H NMR (d⁶-DMSO) δ 1.17 (d, J=7.0 Hz, 6H); 1.35 (s, 9H), 2.73 (d, J=4.4 Hz, 3H), 2.82 (sept, f=7.0 Hz, 1H), 7.13 (d, J=8.5 Hz, 2H), 7.41 (d, J=8.1 Hz, 2H), 7.80 (s, 1H), 7.93 (br q, J=4.8 Hz, 1H), 9.75 (s, 1H), 10.40 (s, 1H); ¹³C NMR (CDCl₃) δ 15.8 (2C), 25.9, 27.5, 31.6 (3C), 34.5, 107.3, 118.5 (2C), 127.8 (2C), 137.2, 137.5, 143.2, 151.6, 157.9, 164.3; FAB-LRMS m/z (rel abundance) 374 (M+H, 50%).
N-(2-Methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(2,4-dimethylphenyl)urea (Example 27): mp 195-6° C.; ¹H NMR (d⁶-DMSO) δ 1.32 (s, 9H), 2.17 (s, 3H), 2.23 (s, 3H), 2.71 (d, J=4.4 Hz, 3H), 6.93 (br d, J=8.1 Hz, 1H), 6.98 (br, s, 1H), 7.27 (d, J=8.1 Hz, 1H), 7.89 (q, J=4.0 Hz, 1H), 8.96 (s, 1H), 10.31 (s, 1H); EI-LRMS m/z (rel abundance) 359 (M⁺, 7%).
N-(2-Methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(3-chloro-4-methylphenyl)urea (Example 28): mp 178-9° C.; ¹H NMR (d⁶-DMSO) δ 1.31 (s, 9H), 2.24 (s, 3H), 2.72 (d, J=4.4 Hz, 3H), 7.19-7.24 (m, 2H), 7.73 (d, J=1.8 Hz, 1H), 7.79 (s, 1H), 7.97 (br q, J=4.3 Hz, 1H), 9.96 (s, 1H), 10.49 (s, 1H); EI-LRMS m/z (rel abundance) 379 (M⁺, 30%), 381 (M⁺+2, 14%).
N-(2-Methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(3-fluoro-4-methylphenyl)urea (Example 29): mp 182-3° C.; ¹H NMR (d⁶-DMSO) δ 1.32 (s, 9H), 2.13 (d, J_F-H=1.5 Hz, 3H), 2.70 (d, J=4.4 Hz, 3H), 7.08-7.12 (m, 2H), 7.42 (dd, J=1.8, 12.5 Hz, 2H), 7.76 (s, 1H), 7.95 (q, J=4.8 Hz, 1H), 9.94 (s, 1H), 10.45 (s, 1H); FAB-LRMS m/z (rel abundance) 364 (M+H, 10%).
N-(2-Methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(3-chloro-4-fluorophenyl)urea (Example 30): mp 203-4° C.; ¹H NMR (d⁶-DMSO) δ 1.34 (s, 9H), 2.72 (d, J=4.4 Hz, 3H), 7.31-7.35 (m, 2H), 7.77 (s, 1H), 7.84 (dm, J=5.9 Hz, 1H), 7.99 br q, J=4.4 Hz, 1H), 10.06 (s, 1H), 10.54 (s, 1H); FAB-LRMS m/z (rel abundance) 359 (M+H, 52%), 386 (M+2+H, 22%).

Method H

Synthesis of N-(2-carboxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (Example 4)

N-(2-Carbobenzyloxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea was synthesized as described in Method E.
To a solution of N-(2-carbobenzyloxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.19 g, 0.40 mmol) in EtOH (19 mL) was added 10% Pd/C (0.010 g). The resulting suspension was treated with H₂(52 psi) in a Parr® shaker for 18 h. The slurry was filtered through a pad of Celite® and concentrated under reduced pressure to afford N-(2-carboxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.12 g, 90%): ¹H NMR (d⁶-DMSO) δ 13 (s, 9H), 2.2 (s, 3H), 7.1 (d, 2H), 7.4 (d, 2H), 7.8 (s, 1H); FAB-LRMS m/z) 333 (M+H).

Method I

Synthesis of N-(2-(N-glycylaminomethyl)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (Example 51)

Step 1

N-(2-Carbamoyl-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea was synthesized in a manner analogous to that described in Method F.
To a solution of BH₃.THF (1.8 mL, 1M in THF) was added a solution of N-(2-carbamoyl-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea in THF (3 mL) and the resulting mixture was heated under reflux for 48 h. After cooling to room temp., a concentrated hydrochloric acid solution was added, and the resulting mixture was extracted with EtOAc. The organic layer was washed with a saturated Na₂CO₃solution, and a saturated NaCl solution, dried (MgSO₄), and concentrated under reduced pressure. The residue was purified by chromatography (SiO₂, 0.1% NH₄OH/10% MeOH/CH₂Cl₂to afford N-(2-aminomethyl-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.18 g, 85%): ¹H NMR (CDCl₁) δ 1.38 (s, 9H), 2.34 (s, 3H), 3.81 (s, 2H), 6.72 (s, 1H), 7.29 (d, J=8.6 Hz; 2H), 7.16 (d, J=8.5 Hz, 2H), 7.87 (s, 1 h); FAB-LRMS m/z 318 (M+H).

Step 2

To a solution of N-(2-aminomethyl-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.20 g, 0.63 mmol) and N-carbo-tert-butoxyglycine (0.11 g, 0.63 mmol, 1.0 equiv) in THF (2 mL) at room temp. were added dicyclohexylcarbodiimide (0.13 g, 0.63 mmol, 1.0 equiv) and 1-hydroxybenzotriazole monohydrate (0.008 g, 0.06 mmol, 10 mol %). The resulting mixture was allowed to stir 18 h, diluted with EtOAc (5 mL), and washed with a saturated NaCl solution. The organic layer was dried (MgSO₄) and concentrated under reduced-pressure. The residue was purified by flash chromatography (gradient from 30% EtOAc/hexane to 50% EtOAc/hexane) to afford N-(2-(N—(N-carbo-tert-butoxyglycyl)aminomethyl)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.12 g, 40%, Example 52): mp 174-176° C.; ¹H NMR (CDCl₃) δ 1.38 (s, 9H), 2.27 (m, 3H), 4.38 (m, 2H), 6.67 (bs, 1H), 6.89 (m, 1H), 7.27 (m, 1H), 7.33 (m, 2H), 8.58 (bs, 1H); FAB-LRMS m/z 475 (M+H).

Step 3.

To a solution of N-(2-(N—(N-carbo-tert-butoxyglycyl)aminomethyl)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.050 g, 0.105 mmol) in CH₂Cl₂(3 mL) at room temp. was added trifluoroacetic acid (0.50 mL, 6.49 mmol, 62 equiv). The resulting mixture was stirred for 3 h, washed with a saturated NaHCO₃solution, dried (MgSO₄), and concentrated under reduced pressure. The residue was purified by flash chromatography (for CH₂Cl₂to 20% MeOH/CH₂Cl₂) to give N-(2-(N-glycylaminomethyl)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.019 g, 48%): mp 93-6° C.; ¹H NMR (CDCl₃) δ 1.14 (s, 9H), 2.08 (s, 3H), 3.89 (s, 2H), 4.34 (br s, 7H), 6.67 (s, 1H), 6.87 (d, J=8.1 Hz, 2H), 7.12 (d, J=8.5 Hz, 2H), 7.3 (m, 2H).

Selected Compound Synthesized Using Method I

N-(2-(N-Acetylaminomethyl)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (Example 50): mp 203-5° C.; ¹H NMR (CDCl₃/d-DMSO) δ 1.3 (s, 9H), 1.9 (s, 3H), 2.2 (s, 3H), 4.3 (d, 2H), 7.0 (d, 2H), 7.2 (s, 1H), 7.3 (m, 2H), 8.6 (br s, 1H); FAB-LRMS m/z 360 (M+H).

Method I

Synthesis of N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-methyl-2-thienyl)urea (Example 15)

Step 1

A solution of 3-methylthiophene (5 mL, 51.75 mmol), sodium persulfate (18.48 g, 77.6 mmol) and palladium acetate (5.81 g, 25.88 mmol) in acetic acid (500 mL) was heated to the reflux temp. A slow stream of carbon monoxide was bubbled through the solution for 3 h. The reaction was cooled to 20° C. and concentrated under reduced pressure. The residue was dissolved in CH₂Cl₂. Celite® was added and the solution was filtered, then passed through a pad of silica gel, and concentrated under reduced pressure. The residue was dissolved in EtOAc and extracted with a 2N KOH solution. The aqueous layer was washed with EtOAc, the pH was adjusted to zero with a concentrated HCl solution, and the resulting mixture was extracted with EtOAc. The organic layer was washed with a saturated NaCl solution and concentrated under reduced pressure to yield a mixture of 3-methylthiophene-2-carboxylic acid and 4-methylthiophene-2-carboxylic acid (1.86 g, 25%).

Step 2

To a solution of a mixture of 3-methylthiophene-2-carboxylic acid and 4-methylthiophene-2-carboxylic acid (1.11 g, 7.81 mmol) and triethylamine (1.3 mL, 9.38 mmol) in acetone (75 mL) at −15° C. was slowly added ethyl chloroformate (1.12 mL, 11.72 mmol). The acetone solution was stirred for 15 min and a solution of NaN₃(0.86 g, 13.3 mmol) in water (15 mL) was added. The reaction was stirred for 30 min, then diluted with CH₂Cl₂and washed with a 1:1 v/v mixture of a saturated NaCl solution and water. The organic phase was dried (MgSO₄) and concentrated under reduced pressure. The residue was purified by flash chromatography (EtOAc/hexane) to give a mixture of azidoesters (0.91 g, 70%) which were used in the next step without further purification.

Step 3

The azidoester mixture (0.120 g, 0.72 mmol) was dissolved in toluene (3 mL) and heated to 100° C. for 5 h, then cooled to 20° C. Methyl 3-amino-5-tert-butylthiophene-2-carboxylate (0.11 g, 0.50 mmol) was added and the reaction was heated to 95° C. for 18 h. The reaction was cooled to 20° C. and concentrated under reduced pressure. The residue was purified by flash chromatography (EtOAc/hexane) followed by normal phase HPLC (CH₂Cl₂), to afford N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-methyl-2-thienyl)urea (0.082 g, 46%) and N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(3-methyl-2-thienyl)urea (0.018 g, 10%). N-(2-Carbomethoxy-5-tert-butyl-3-thienyl)-N′-(3-methyl-2-thienyl)urea: ¹H NMR (CDCl₃) δ 1.35 (s, 9H), 2.15 (s, 3H), 3.75 (s, 3H), 6.45 (bs, 2H), 6.85 (d, 1H), 7.10 (d, 1H), 7.85 (s, 1H), 9.70 (s, 1H), FAB-LRMS m/z (rel abundance) 353 (M+H, 88%). N-(2-Carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-methyl-2-thienyl)urea: ¹H NMR (CDCl₃) δ 1.35 (s, 9H), 2.20 (s, 3H), 3.75 (s, 3H), 6.55 (bs, 2H), 7.80 (br s, 1H), 7.85 (s, 1H), 9.80 (s, 1H), FAB-LRMS m/z (rel abundance) 353 (M+H, 30%).

Selected Compound Synthesized Using Method J

N-(2-Carbomethoxy-5-tert-butyl-3-thienyl)-N′-(5-methyl-2-thienyl)urea (Example 14): mp 118-20° C.; ¹H NMR (CDCl₃) δ 1.35 (s, 9H), 2.40 (s, 3H), 3.75 (s, 3H), 6.55 (bs, 2H), 7.90 (s, 1H), 8.10 (bs, 1H), 9.75 (s, 1H); FAB-LRMS m/z (rel abundance) 353 (M+H, 56%).

Method K

Synthesis of N-(2-carbomethoxy-5-tert-butyl-3-furyl)-N′-(4-methylphenyl)urea (Example 32)

Step 1

To a solution of 2-tert-butylfuran (4.5 g, 36 mmol) in anh. THF (60 mL) at −78° C. under N₂was added n-butyllithium (1.6M in hexane, 25 mL, 40 mmol, 1.1 equiv) dropwise. After 30 min, the cooling bath was replaced with an ice bath and the mixture was stirred at 0° C. for 1 h. Dry CO₂, generated from dry ice and dried over an anhydrous Na₂SO₄tower, was bubbled into the reaction mixture over 20 min at −78° C. and then at 0° C. The reaction mixture was acidified to pH 1 with a 1M HCl solution, then extracted with EtOAc. The organic layer was washed with a concentrated NaCl solution, dried (NaSO₄) and concentrated under reduced pressure to give 5-tert-butylfuran-2-carboxylic acid as a pale yellow solid (4.2 g, 69%): ¹H NMR (CDCl₃) δ 1.29 (s, 9H), 6.11 (d 1H, J=3.3 Hz), 7.19 (d, 1H, J=3.3 Hz), 11.0 (br s, 1H).

Step 2

A solution of 5-tert-butylfuran-2-carboxylic acid (2.0 g, 11.9 mmol) in anh. THF (30 mL) was cooled to −78° C. under N₂, then n-butyllithium (1.6M in hexane solution, 15.6 mL, mmol, 2.1 equiv) was added dropwise. After 30 min, TsN₃(2.3 g, 11.9 mmol, 1.1 equiv) in anh. THF (3 mL) was added dropwise via cannula followed by a wash portion of anh. THF (3 mL). The yellow solution was allowed to warm to 0° C. over 2 h, then 6 g of KOAc (6 g, 60 mmol, 5 equiv) was added and the suspension was stirred rapidly at room temp. for 14 h. The mixture was diluted with Et₂O and extracted with water. The aqueous phase was acidified to pH 1 with a 1M HCl solution, then extracted thoroughly with EtOAc. The organic phase was washed with a concentrated NaCl solution, dried (NaSO₄), and concentrated under reduced pressure. The resulting red oil was diluted with Et₂O (150 mL) and MeOH (20 mL) then treated with TMSCHN₂(2.0M in hexane, 45 mL, 90 mmol). After 30 min, the mixture was concentrated, and the oil was purified by flash chromatography (10% EtOAc/hexane) to give a colorless oil (1.72 g). Analysis of the product by ¹H NMR indicated an approximately 2:3 mixture of methyl 3-azido-5-tert-butylfuran-2-carboxylate and methyl 5-tert-butylfuran-2-carboxylate, which co-elute. Methyl 3-azido-5-tert-butylfuran-2-carboxylate: ¹H NMR (CDCl₃) δ 1.25 (s, 9H), 3.80 (s, 3H), 5.99 (s, 1H); FTIR (neat) 2965 (s), 2118 (s), 1723 (s) cm⁻¹. The mixture was used in the next step without further purification.

Step 3

A mixture of methyl 3-azido-5-tert-butylfuran-2-carboxylate and methyl 5-tert-butylfuran-2-carboxylate (1.72 g) and 10% Pd/C (0.50 g) in cellosolve (30 mL) was successively evacuated and purged with H₂three times. The reaction mixture was then shaken under H₂(40 psi) for 1 h, diluted with EtOAc and filtered through a pad of Celite®. The filtrate was concentrated under reduced pressure, then purified by flash chromatography (20% EtOAc/hexane) to give methyl 5-tert-butylfuran-2-carboxylate (0.73 g, 34%) followed by methyl 3-amino-5-tert-butylfuran-2-carboxylate (0.59 g, 25% yield from 5-tert-butylfuran-2-carboxylic acid). Methyl 3-amino-5-tert-butylfuran-2-carboxylate: ¹H NMR (CDCl₃) δ 1.29 (s, 9H), 4.24 (br s, 2H), 5.76 (s, 1H); ¹³C NMR (CDCl₃) δ 28.3, 32.8, 50.5, 98.3, 124.1, 144.9 (br), 160.5, 168.1, 178.7; FTIR (neat) 3330-2950 (br, s), 2850 (m), 1680 (s), 1637 (s), 1537 (s), 1346 (s), 1131 (s) cm⁻¹.

Step 4

Phosgene (1.93M in toluene, 1.3 mL, 2.5 mmol, 10 equiv) was added rapidly to a solution of methyl 3-amino-5-tert-butylfuran-2-carboxylate (0.050 g, 0.25 mmol) and anh. pyridine (1.0 mL) in anh. toluene (5 mL) at room temp. After 30 min, the orange suspension was concentrated under reduced pressure, then successively charged with dry toluene (1 mL) and concentrated (2×). Finally, anh. toluene (3 mL) was added followed by p-toluidine (0.100 g, 0.93 mmol, 3.7 equiv). The orange mixture was stirred overnight, diluted with EtOAc, washed with a 1M HCl solution and a concentrated NaCl solution, then dried (Na₂SO₄) and concentrated under reduced pressure. The residue was purified by flash chromatography to give N-(2-carbomethoxy-5-tert-butyl-3-furyl)-N′-(4-methylphenyl)urea (0.080 g, 96%) as a pale yellow oil: ¹H NMR (CDCl₃) δ 1.28 (s, 9H), 2.30 (s, 3H), 3.77 (s, 3H), 7.02 (s, 1H), 7.11 (d, J=8.1 Hz, 2H), 7.27 (d, J=8.1 Hz, 2H), 7.87 (br s, 1H), 8.68 (br s, 1H); ¹³C NMR (CDCl₃) δ 20.6, 28.3 (3C), 33.0, 51.0, 100.1, 121.4 (2C), 126.0, 129.5 (2C), 134.0, 134.8, 137.7, 152.5, 160.5, 168.2, FTIR (neat) 3400-3200 (br, m), 2966 (s), 1676 (s), 1622 (s), 1536 (s) 1306 (s), 1097 (m) cm⁻¹.

Method L-1

Step 1

3-Chloro-4,4-dimethyl-2-pentenenitrile was prepared following a literature procedure (Hatcher et al. J. Heterocycl. Chem. 1989, 26, 1575). POCl₃(22.4 mL), 0.24 mol, 2.4 equiv) was slowly added to a 0° C. solution of DMF (20.2 mL, 0.26 mol, 2.6 equiv) keeping the temp. under 20° C. The resulting pink solid was heated to 40° C., pinacolone (12.5 mL, 0.10 mol) was added to the resulting red solution, and this mixture was heated to 55° C. for 2 h and 75° C. for 2 h. NH₂OH.HCl (16.7 g, 0.24 mol, 2.4 equiv) was added to the 75° C. mixture slowly (<100 mg portions; CAUTION gas evolution and foaming). The resulting solution was heated to 85° C. for 2 h, then allowed to cool to room temp. overnight. The resulting yellow gel was separated between H₂O (500 mL) and EtOAc (300 mL). The aqueous layer was extracted with EtOAc (2×200 mL). The combined organic layers were washed with a saturated NaCl solution, dried (Na₂SO₄) and concentrated under reduced pressure to give 3-chloro-4,4-dimethyl-2-pentenenitrile as a brown oil (13.2 g, 93%): ¹H NMR (CDCl₃) δ 1.23 (s, 9H), 5.56 (s, 1H); GC-LRMS m/z (rel abundance) 143 (28%), 145 (11%). This material was used in the next step without further purification.

Step 2

To a slurry of NaH (5.98 g, 0.24 mol, 2.6 equiv) in anh. DME (800 mL) at 0° C. was added methyl glycolate (23.0 g, 0.26 mol, 2.8 equiv) over 20 min. The mixture was stirred for 1 h at room temp. and a solution of 3-chloro-4,4-dimethyl-2-pentenenitrile (13.1 g, 0.091 mol) in DME (100 mL) was added. The resulting solution was heated to 85° C. for 42 h, cooled to room temp., and treated with H₂O (100 mL). The resulting mixture was separated between H₂O (200 mL) and EtOAc (300 mL). The aqueous layer was extracted with EtOAc (2×200 mL). The combined organic layers were washed with a saturated NaCl solution, dried (Na₂SO₄), and concentrated under reduced pressure. The residual oil was purified by flash chromatography (300 g SiO₂, gradient from 50% CH₂Cl/hexane to 20% EtOAc/Cl₂Cl₂) to give methyl 3-amino-5-tert-butylfuran-2-carboxylate as a yellow solid (2.98 g, 17%): mp 91-2° C.; TLC (20% EtOAc/hexane) R_f0.36; ¹H NMR (CDCl₃) δ 1.26 (s, 9H), 3.84 (s, 3H), 4.54 (br s, 2H), 5.75 (s, 1H); ¹³C NMR (CDCl₃) δ 28.5 (3C), 33.0, 50.7, 98.5, 128.8, 131.0, 160.7, 168.3.

Step 3

To a solution of phosgene (1.93M in toluene, 9.7 mL, 18.6 mmol, 3.0 equiv) in CH₂Cl₂(80 mL) at 0° C. was added a solution of methyl 3-amino-5-tert-butylfuran-2-carboxylate (1.23 g, 6.2 mmol) and pyridine (1.97 g, 24.9 mmol, 4.0 equiv) in CH₂Cl₂(20 mL). The reaction mixture was allowed to slowly warm to room temp. and rapidly form a precipitate. The resulting slurry was stirred at room temp. for 1 h, then concentrated under reduced pressure to give 2-carbomethoxy-5-tert-butyl-3-furyl isocyanate and pyridinium hydrochloride. 2-Carbomethoxy-5-tert-butyl-3-furyl isocyanate: ¹H NMR (CDCl₃) δ 1.25 (s, 9H), 4.85 (s, 3H), 5.90 (s, 1H). The mixture was used in the next step without further purification.

Step 4

The 2-carbomethoxy-5-tert-butyl-3-furyl isocyanate prepared in Step 3 was dissolved in anh. toluene (40 mL), p-toluidine (2.05 g, 6.02 mmol, 1.0 equiv) was added, and the resulting solution was stirred at room temp. for 1 h. The toluene mixture was concentrated under reduced pressure, then diluted with CHCl₃(150 mL). The organic solution was washed with a 1N HCl solution (2×100 mL) and a saturated NaCl solution (100 mL), dried (Na₂SO₄) and concentrated under reduced pressure. The residue was purified by flash chromatography (100 g SiO₂, gradient from hexane to 10% EtOAc/hexane) to give N-(2-carbomethoxy-5-tert-butyl-3-furyl)-N′-(4-methylphenyl)urea as a yellow solid (0.71 g, 35): mp 78-9° C.; TLC (20% EtOAc/hexane) R_f0.46; ¹H NMR δ 1.28 (s, 9H), 2.33 (s, 3H), 3.80 (s, 3H), 7.03 (s, 1H), 7.10 (br s, 1H), 7.15 (d, J=8.5 Hz, 2H), 7.27 (d, J=8.5 Hz, 2H) 8.60 (brs, 1H); ¹³C NMR δ 20.8, 28.5 (3C), 33.2, 51.3, 100.3, 121.7 (br s, 2C), 126.2, 129.8 (br s, 2C), 134.3 (br s), 135.0, 137.5 (br s), 152.6, 160.8, 168.5; FAB-LRMS m/z (rel abundance) 331 (M+H, 64%).

Method L-2

Synthesis of ethyl 3-amino-5-tert-butylfuran-2-carboxylate

A 0° C. solution of triphenylphosphine (2.72 g, 10.4 mmol, 1.3 equiv) in anh. THE (50 mL) was treated with diethyl azodicarboxylate (1.81 g, 10.4 mmol, 1.3 equiv), ethyl glycolate (1.08 g, 10.4 mmol, 1.3 equiv) and 4,4-dimethyl-3-oxopentanenitrile (1.00 g, 8.0 mmol). The resulting solution was allowed to warm to room temperature, stirred for 15 h and concentrated under reduced pressure. The residue was purified by flash chromatography (11 cm×22 cm SiO₂, gradient from 5% EtOAc/hex to 8% EtOAc/hex) to afford (Z)-4,4-dimethyl-3-(ethoxycarbonylmethoxy)pentenenitrile (1.36 g, 80%) as a colorless oil: TLC (5% EtOAc/hexanes) R_f0.26; ¹H NMR (CDCl₃) δ 1.12 (s, 9H), 1.28 (t, J=7.0 Hz, 3H), 4.24 (q, J=7.0 Hz, 2H), 4.55 (s, 1H), 5.00 (s, 2H); ¹³C NMR (CDCl₃) δ 13.9, 27.8, 38.2, 61.5, 67.1, 67.3, 117.0, 167.1, 180.7; CI-LRMS m/z (rel abundance) 212 (M+H, 100%). Anal. Calcd for C₁₁H₁₇NO₃: C, 62.54; H, 8.11; N, 6.63. Found: C, 62.57; H, 7.90; N, 6.47.

Step 2

To a slurry of sodium hydride (62 mg, 2.6 mmol, 1.1 equiv) in anh. THE (50 mL) was 3 added (Z)-4,4-dimethyl-3-(ethoxycarbonylmethoxy)pentenenitrile (0.50 g, 2.4 mmol). The reaction mixture was stirred for 3 h, treated with a saturated aq. NH₄Cl solution (2 mL), and concentrated under reduced pressure. The residue was purified by flash chromatography (50 g SiO₂, 10% EtOAc/hex) to afford ethyl 3-amino-5-tert-butylfuran-2-carboxylate (0.44 g, 88%) as a white solid: mp 44-45° C.; TLC (10% EtOAc/hex) R_f0.19; ¹H NMR (CDCl₃) δ 1.26 (s, 9H), 1.36 (t, J=7.0 Hz, 3H), 4.32 (q, J=7.0 Hz, 2H), 4.51 (br s, 2H), 5.75 (s, 1H); FAB-LRMS m/z (rel abundance) 212 (M+H, 100%). Anal. Calcd for C₁₁H₁₇NO₃: C, 62.54; H, 8.11; N, 6.63. Found: C, 62.48; H, 8.06; N, 6.61.

Selected Compound Synthesized Using Method L-1 or L-2

N-(2-Carbomethoxy-5-tert-butyl-3-furyl)-N′-(4-fluorophenyl)urea (Example 33): mp 81-2° C.; TLC (20% EtOAc/hexane) R_f0.37; ¹H NMR δ 1.28 (s, 9H), 3.82 (s, 3H), 6.99 (s, 1H), 7.04 (app td, J=8.6, 2.2 Hz, 2H), 7.30-7.39 (m, 2H), 8.63 (brs, 1H); ¹³C NMR δ 28.5 (3C), 33.3, 51.4, 100.2, 116.0 (d, J_C-F=22.0 Hz, 2C), 123.0 (br d, J_C-F=4.9 Hz, 2C), 126.3, 133.5 (d, J_C-F=3.7 Hz, 1C), 152.3, 159.8 (d, J_C-F=242.9 Hz, 1C), 168.6; FAB-LRMS m/z (rel abundance) 335 (M+H, 60%).
N-(2-Carbomethoxy-5-tert-butyl-3-furyl)-N′-(2,3-dichlorophenyl)urea (Example 34): mp 195-7° C.; TLC (20% EtOAc/hexane) R^f0.58; ¹H NMR δ 1.31 (s, 9H), 3.89 (s, 3H), 6.99 (s, 1H), 7.20-7.22 (m, 2H), 7.29 (s, 1H), 8.08 (dd, J=6.4, 3.5 Hz, 1H) 8.76 (brs, 1H); ¹³C NMR δ 28.5 (3C), 33.3, 51.5, 100.1, 113.3, 119.7, 125.0, 126.5, 127.6, 132.9, 136.4, 137.5, 150.9, 161.1, 168.5; EI-LRMS m/z (rel abundance) 385 (M⁺, 100%), 387 (M⁺+2, 71%), 389 (M⁺+4, 13%).

Method M

Synthesis of N-(2-methylcarbamoyl-5-tert-butyl-3-furyl)-N′-(4-fluorophenyl)urea (Example 36)

Step 1

A slurry of methylamine hydrochloride (1.03 g, 15.2 mmol, 3.0 equiv) in anh. toluene (60 mL) at 0° C. was treated with AlMe₃(2M in toluene, 7.6 mL, 15.2 mmol, 3.0 equiv). The resulting solution was stirred at 0° C. for 30 min and allowed to warm to room temp for min. To the aluminum amide solution was then added methyl 3-amino-5-tert-butyl-2-furancarboxylate (1.00 g, 5.1 mmol). The resulting mixture was heated at the reflux temp. for 20 h, cooled to room temp., and a 6N HCl solution was added, dropwise. The quenched mixture was made basic with a 1N NaOH solution (approximately 100 mL) and extracted with EtOAc (3×200 mL). The combined organic layers were washed with a saturated NaCl solution, dried (Na₂SO₄), and concentrated under reduced pressure to afford N-methyl-3-amino-5-tert-butyl-2-furancarboxamide as a yellow solid (0.90 g, 91%): TLC (20% EtOAc/CH₂Cl₂) R_f0.26; ¹H NMR (CDCl₃) δ 1.23 (s, 9H), 2.93 (d, J=4.8 Hz, 3H), 4.51 (br s, 1H), 5.73 (s, 1H).

Step 2

To a solution of N-methyl-3-amino-5-tert-butylfuran-2-carboxamide (0.15 g, 0.76 mmol) in anh. toluene (2 mL) at the reflux temp. was slowly added 4-fluorophenyl isocyanate (0.10 g, 0.76 mmol, 1.0 equiv). The resulting solution was allowed to stir at the reflux temp. for 14 h, cooled to room temp., and concentrated under reduced pressure. The residue was purified by flash chromatography (15 g SiO₂, gradient from 50% CH₂Cl₂hexane to 100% CH₂Cl₂, then to 20% EtOAc/CH₂Cl₂) to afford N-(2-methylcarbamoyl-5-tert-butylfuryl)-N′-(4-fluorophenyl)urea (0.16 g, 61%): mp 109-11° C., TLC (30% EtOAc/CH₂Cl₂) R^f0.21; ¹H NMR (CDCl₃) δ 1.29 (s, 9H), 2.89 (d, J=4.8 Hz, 3H), 6.02 (br q, J=4.8 Hz, 1H), 6.98 (app td, J=16.6, 4.1 Hz, 2H), 7.01 (s, 1H), 7.34-7.39 (m, 2H), 8.05 (br s, 1H), 9.14 (s, 1H); ¹³C NMR (CDCl₃) δ 25.5, 28.7 (3C), 33.1, 100.7, 115.6 (d, J_C-F=23.2 Hz, 2C), 121.5 (d, J_C-F=7.3 Hz, 2C), 128.3, 134.5 (br s), 152.4, 158.9 (d, J_C-F=242.9 Hz, 1C), 161.6, 165.8; FAB-LRMS m/z (rel abundance) 334 (M+H, 100%).

Selected Compound Synthesized Using Method M

N-(2-Methylcarbamoyl-5-tert-butylfuryl)-N′-(4-methylphenyl)urea (Example 35): mp 190-3° C.; TLC (30% EtOAc/CH₂Cl₂) R_f0.25; ¹H NMR (CDCl₃) δ 1.29 (s, 9H), 2.30 (s, 3H), 2.92 (d, J=4.8 Hz, 3H), 5.99 (br q, J=4.8 Hz, 1H), 7.03 (d, J=1.1 Hz, 1H), 7.10 (d, J=8.5 Hz, 2H), 7.29 (d, J=8.5 Hz, 2H), 7.56 (br s, 1H), 9.12 (s, 1H); ¹³C NMR (CDCl₃) δ 20.8, 25.4, 28.7 (3C), 33.8, 100.7, 120.1 (2C), 128.4, 129.7 (2C), 133.1, 134.5, 135.7, 152.3, 161.6, 165.6; FAB-LRMS m/z (rel abundance) 330 (M+H, 100%).

Method N-1

Synthesis of N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(4-methyl-phenyl)urea (Example 38)

Step 1

To a solution of pyrrole-2-carboxylic acid (6.28 g, 56.5 mmol) in anh. MeOH (100 mL) under N₂at room temp. was added TMSCl (17.9 mL, 141 mmol, 2.5 equiv) in one portion. After stirring overnight, the reaction mixture was concentrated under reduced pressure, redissolved in CH₂Cl₂, washed with water, dried (Na₂SO₄) and concentrated to give methylpyrrole-2-carboxylate as a tannish semi-crystalline solid (4.62 g, 65%): ¹H NMR (CDCl₃) δ 3.86 (s, 3H), 6.29 (br q, 1H), 6.92 (br m, 1H), 6.96 (br m, 1H), 9.30 (br s, 1H). This material was used in the next step without further purification.

Step 2

To a solution of methylpyrrole-2-carboxylate (0.30 g, 2.42 mmol) in anh. 1,2-dichloroethane (12 mL) under N₂at room temp. was added A1Cl₃(0.710 g, 5.33 mmol, 2.2 equiv) in one portion. 2-Chloro-2-methylpropane (0.26 mL, 2.42 mmol, 1.0 equiv) was added in one portion via syringe. After 2 h, the reaction was quenched by slowly pouring it into a saturated NaHCO₃solution. The resulting white suspension was extracted with Et₂O (2×). The combined organic layers were dried (Na₂SO₄) and concentrated under reduced pressure to give an off-white solid (0.40 g), which was purified by flash chromatography (60% CH₂Cl₂/hexane) to give methyl 5-tert-butylpyrrole-2-carboxylate as a white amorphous solid (0.36 g, 81%): ¹H NMR (CDCl₃) δ 1.31 (s, 9H), 3.83 (s, 3H), 6.00 (t, J=3.3 Hz, 1H), 6.81 (t, J=3.3 Hz, 1H), 8.82 (br s, 1H).

Step 3

To a heterogeneous mixture of methyl 5-tert-butylpyrrole-2-carboxylate (1.65 g, 9.10 mmol) in concentrated H₂SO₄(19 mL) under N₂at room temp. was added fuming nitric acid (0.57 mL, 13.6 mmol, 1.5 equiv) in one portion via syringe. After 1 h, the reaction mixture was poured into ice-water and the resulting mixture was carefully adjusted to pH 7 with solid Na₂CO₃. The resulting mixture was extracted with Et₂O (2×), dried (Na₂SO₄), and concentrated under reduced pressure. The residue was purified using flash chromatography (70% CH₂Cl/hexane) to give methyl 5-tert-butyl-3,4-dinitropyrrole-2-carboxylate (0.27 g) followed by methyl 5-tert-butyl-3-nitropyrrole-2-carboxylate (0.44 g). Resubmission of mixed fractions to the flash chromatography conditions provided additional methyl 5-tert-butyl-3-nitropyrrole-2-carboxylate (0.22 g, 0.66 g total, 32% total yield). Methyl 5-tert-butyl-3-nitropyrrole-2-carboxylate: ¹H NMR (CDCl₃) δ 1.33 (s, 9H), 3.93 (s, 3H), 6.56 (d, J=3.3 Hz, 1H), 9.22 (br s, 1H). Methyl 5-tert-butyl-3,4-dinitropyrrole-2-carboxylate: ¹H NMR (CDCl₃) δ 1.52 (s, 9H), 3.91 (s, 3H), 9.17 (br s, 1H).

Step 4

A mixture of methyl 5-tert-butyl-3-nitropyrrole-2-carboxylate (0.014 g, 0.062 mmol) and 10 to 10% Pd/C (3 mg) in dry MeOH (1 mL) was successively evacuated and purged with H₂three times, then shaken under an atmosphere of H (35 psi) for 1 h, diluted with CH₂Cl₂and filtered through a pad of Celite®. The filtrate was concentrated under reduced pressure to give methyl 3-amino-5-tert-butylpyrrole-2-carboxylate as a bright yellow oil (0.012 g, 100%). ¹H NMR (CDCl₃) δ 1.26 (s, 9H), 3.82 (s, 3H), 5.52 (d, J=2.8 Hz, 1H), 7.89 (br s, 2H). This material was used in the next step without further purification.

Step 5

To a solution of methyl 3-amino-5-tert-butylpyrrole-2-carboxylate (12 mg, 0.062 mmol) and anh. pyridine (0.25 mL, 3.06 mmol, 49.4 equiv) in anh. toluene (1 mL) was rapidly added phosgene (1.93M in toluene, 0.32 mL, 0.62 mmol, 10 equiv). After 30 min, the orange suspension was concentrated under reduced pressure, then successively charged with anh. toluene (1 mL) and concentrated (2×). Finally, toluene (2 mL) was added followed by p-toluidine (10 mg, 0.094 mmol). The mixture was heated at 90° C. for 3 h, then was concentrated under reduced pressure. The residue was purified by preparative TLC (2 plates, 20×20 cm×0.25 mm, 2% MeOH/CH₂Cl₂). The major UV-active band was isolated and the product was extracted from the silica using 5% MeOH/CHCl₂to give N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(4-methylphenyl)urea as a pale yellow amorphous solid (0.016 g, 80%): ¹H NMR (d⁶-DMSO) δ 1.23 (s, 9H), 2.20 (s, 3H), 3.78 (s, 3H), 6.54 (d, J=3.0 Hz, 1H), 7.04 (d, J=8.5 Hz, 2H), 7.32 (d; J=8.5 Hz, 2H), 8.61 (s, 1H), 9.51 (s, 1H), 10.85 (br d, J=2.2 Hz, 1H); ¹³C NMR (MeOD, CDCl₃, partial spectrum) δ 19.7, 29.0 (3C), 31.5, 50.0, 97.4, 105.9, 119.6 (2C), 128.9 (2C), 132.2, 136.2, 147.6, 153.5, 161.9; FTIR (KBr) 3341 (s), 2947 (m), 1676 (s), 1583 (s), 1548 (s), 1456 (s), 1279 (s), 1208 (s), 1094 (s); cm⁻¹; FAB-LRMS m/z (rel abundance) 330 (M+H, 47%).

Selected Compounds Synthesized Using Method N-1

N-(2-Carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(phenyl)urea (Example 37): ¹H NMR (d⁶-DMSO) δ 1.23 (s, 9H), 3.78 (s, 3H), 6.54 (d, J=2.9 Hz, 1H), 7.26 (dd, J=2.6, 8.8 Hz, 1H), 7.48 (d, J=8.8 Hz, 1H), 7.90 (d, J=2.6 Hz, 1H), 8.76 (s, 1H), 9.97 (s, 1H), 10.95 (br d, J=1.8 Hz, 1H); FAB-LRMS m/z (rel abundance) 384 (M+H, 93%).
N-(2-Carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(2,3-dichlorophenyl)urea (Example 39): ¹H NMR (d-DMSO) δ 1.23 (s, 9H), 3.78 (s, 3H), 6.55 (d, J=2.9 Hz, 1H), 6.92 (t, J=7.4 Hz, 1H), 7.23 (dd, J=7.4, 8.5 Hz, 2H), 7.44 (d, J=7.7 Hz, 2H), 8.66 (s, 1H), 9.60 (s, 1H), 10.88 (br d, J=1.5 Hz, 1H); FAB-LRMS m/z (rel abundance) 316 (M+H, 95%).

Method N-2

Synthesis of N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(2,3-dichlorophenyl)urea (Example 73)

To a solution of methyl 3-amino-5-tert-butylpyrrole-2-carboxylate (0.99 g, 5.00 mmol) in anh. CH₂Cl₂(50 ml) at room temp was added a solution of 2,3-dichlorophenyl isocyanate (0.948 g, 5.00 mmol) in CH₂Cl₂(10 mL) and the resulting mixture was allowed to stir overnight. The resulting white precipitate formed overnight was separated and washed with CH₂Cl₂to give the desired urea (1.39 g, 67%) as a white powder: mp 200-201° C.; ¹H-NMR (DMSO-d₆) δ 1.23 (s, 9H), 3.78 (s, 3H), 6.50 (d, J=2.95 Hz, 1H), 7.26-7.30 (m, 2H), 7.88-7.91 (m, 1H), 9.12 (s, 1H), 9.40 (s, 1H), 10.91 (br s, 1H); FAB-LRMS m/z 384 (M+H). Anal. Calcd for C₁₇H₁₉N₃O₃C12: C, 53.14; H, 4.98; N, 10.94. Found: C, 53.03; H, 4.79; N, 10.86.

Method N-3

Synthesis of N-(2-methylcarbamoyl-5-tert-butyl-3-pyrrolyl)-N′-(4-methylphenyl)urea (Example 113)

Step 1

Methyl 5-tert-butyl-3-nitropyrrole-2-carboxylate was prepared as described in Method N-1 Step 3. To a solution of methyl 5-tert-butyl-3-nitropyrrole-2-carboxylate (10.38 g, 45.9 mmol) in a THF-MeOH—H₂O mixture (1.0:1.0:0.5, 250 mL) at room temp. was added a 1N NaOH solution (92 mL, 92 mmol) via pipette. The color of the reaction mixture turned from green to red. The mixture was warmed to the reflux temperature, maintained for 3 hr, cooled to room temp. and concentrated in vacuo. The residue was made acidic using a 10% citric acid solution and was extracted with EtOAc (2×50 mL). The organic layer was washed with a saturated NaCl solution, dried (MgSO₄), and concentrated in vacuo. The residue was triturated with hexanes to give 5-tert-butyl-3-nitropyrrole-2-carboxylic acid (9.70 g, 99%) as a green powder: ¹H NMR (DMSO-d₆) δ 1.24 (s, 9H), 6.41 (d, J=2.9 Hz, 1H), 12.19 (br s, 1H), 13.50 (br s, 1H).

Step 2

To a solution of 5-tert-butyl-3-nitropyrrole-2-carboxylic acid (2.01 g, 9.5 mmol) in a solution of anh. THF and anh. DMF (3:1, 100 mL) at 0° C. was added N-methylmorpholine (2.1 mL, 19 mmol, 2.0 equiv), followed by methylamine (2M in THF, 5.93 mL, 11.1 mmol, 1.25 equiv) and EDCI.HCl (2.85 g, 14.9 mmol, 1.57 equiv). The resulting mixture was allowed to warm to room temp. and stirred at that temp. overnight. The reaction mixture was diluted with H₂O (100 mL), then made acidic with a 10% citric acid solution, and extracted with EtOAc (2×50 mL). The combined organic layers were washed with a saturated NaCl solution, dried (MgSO₄), and concentrated in vacuo. The residue was purified by flash chromatography (15% CH₂Cl₂/hex) to give 2-(N-methylcarbamoyl)-5-tert-butyl-3-nitropyrrole (1.40 g; 66%) as a yellow solid: ¹H NMR (DMSO-d₆) δ 1.29 (s, 9H), 2.76 (d, J=4.4 Hz, 3H), 6.36 (d, J=2.9 Hz, 1H), 8.59-8.60 (m, 1H), 12.19 (br s, 1H).

Step 3

To a solution of 2-(N-methylcarbamoyl)-5-tert-butyl-3-nitropyrrole (1.0 g, 0.4 mmol) in EtOAc (50 mL) under an Ar atmosphere was added 10% Pd/C (50 mg). The mixture was evacuated then placed under a static H₂atmosphere (1 atm.) for 24 h. The resulting slurry was filtered through a pad of Celite® with the aid of EtOAc, and the filtrate was concentrated under reduced pressure to afford 2-(N-methylcarbamoyl)-3-amino-5-tert-butylpyrrole (0.61 g, 70%): ¹H-NMR (DMSO-d₆) δ 1.16 (s, 9H), 2.66 (d, J=4.41 Hz, 3H), 4.89 (br s, 2H), 5.27 (d, J=2.58 Hz, 1H), 7.14-7.16 (m, 1H), 9.52 (br s, 1H).

Step 4

To a solution of 2-(N-methylcarbamoyl)-3-amino-5-tert-butylpyrrole (0.14 g, 0.70 mmol) in CH₂Cl, (5 mL) at room temp. was and p-tolyl isocyanate (0.088 mL, 0.70 mmol, 1.0 equiv) and the resulting mixture was allowed to stir at room temp.overnight. The resulting precipitate was separated and washed with CH₂Cl₂to give N-(2-methylcarbamoyl-5-tert-butyl-3-pyrrolyl)-N′-(4-methylphenyl)urea (0.17 g, 74%): mp 164-166° C.; ¹H-NMR (DMSO-d₆) δ 1.23 (s, 9H), 2.19 (s, 3H), 2.75 (d, J=4.41 Hz, 3H), 6.49 (d, J=2.57 Hz, 1H), 7.01 (d, J=8.46 Hz, 2H), 7.33 (d, J=8.46 Hz, 2H), 7.60-7.63 (m, 1H), 9.45 (s, 1H), 9.50 (s, 1H), 10.17 (br s, 1H); FAB-LRMS m/z 329 (M+H).

Method O

Synthesis of N—(N-methyl-2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(4-methylphenyl)urea (Example 40)

Step 1

To a cold (0-10° C.) solution of methyl 5-tert-butyl-3-nitropyrrole-2-carboxylate (0.100 g, 0.44 mmol), benzyltributylammonium bromide (0.16 mg, 0.44 mmol, 1 equiv), and dimethyl sulfate (46 μL, 0.49 mmol, 1.1 equiv) in CH₂Cl₂(1 mL) was added a 50% NaOH solution (0.21 g, 2.65 mmol, 6 equiv). After 5 min, the cooling bath was removed and the mixture was stirred at room temp. for 4 h. The reaction mixture was diluted with CH₂Cl₂, washed with water and a 10% NH₄OAc solution (2×), dried (Na₂SO₄), and concentrated under reduced pressure to give a bright yellow oil. The oil was purified by flash chromatography (70% CH₂Cl₂/hexane) to give methyl 5-tert-butyl-1-methyl-3-nitropyrrole-2-carboxylate as a pale yellow oil which solidifies upon standing (0.061 g, 62%): ¹H NMR (CDCl₃) δ 1.38 (s, 9H), 3.80 (s, 3H), 3.92 (s, 3H), 6.47 (s, 1H).

Step 2

Methyl 5-tert-butyl-1-methyl-3-nitropyrrole-2-carboxylate was reduced in a manner similar to that described in Method N, Step 4 to give methyl 3-amino-5-tert-butyl-1-methylpyrrole-2-carboxylate as an oil (0.059 g, 100%, crude yield): ¹H NMR (CDCl₃) δ 1.33 (s, 9H), 3.80 (s, 3H), 3.85 (s, 3H), 4.34 (br s, 2H), 5.48 (s, 1H); ¹³C NMR (CDCl₃) δ 29.7, 31.9, 34.7, 50.6, 95.7, 107.4, 142.3, 149.0, 162.2.

Step 3

To a solution of methyl 3-amino-5-tert-butyl-1-methylpyrrole-2-carboxylate (0.059 g, 0.280 mmol) and dry pyridine (1 mL) in anh. toluene (2 mL) was rapidly added phosgene (1.93M in toluene, 1.45 mL, 2.80 mmol, 10 equiv). Additional anh. toluene (3 mL) was added to aid stirring of the heterogeneous mixture. After 30 min, the orange suspension was concentrated under reduced pressure, then successively charged with anh. toluene (1 mL) and evaporated (2×). Finally, toluene (3 mL) was added followed by p-toluidine (0.11 mg, 1.04 mmol, 3.7 equiv). The resulting homogeneous mixture was stirred overnight, diluted with CH₂Cl₂and washed with a 1M HCl solution. The aqueous layer was back-extracted with CH₂Cl₂(2×). The combined organic phases were dried (Na₂SO₄), and concentrated under reduced pressure. The residue was purified by flash chromatography (10% to 25% EtOAc/hexane) to give N—(N-methyl-2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(4-methyl-2-thienyl)urea as a pale yellow solid (0.066 g, 69%): ¹H NMR (CDCl₃) δ 1.35 (s, 9H), 2.31 (s, 3H), 3.64 (s, 3H), 3.88 (s, 3H), 6.80 (s, 1H), 7.11 (d, J=8.4 Hz, 2H), 7.26 (app d, J=8.4 Hz, 3H), 8.81 (br s, 1H); ¹³C NMR (CDCl₃) δ29.8 (3C), 31.4, 32.1, 35.0, 50.4, 98.8, 108.8, 122.0 (2C), 129.5 (2C), 133.8, 134.0, 135.3, 148.6, 153.0, 162.0; FTIR (KBr) 2364 (s), 2335 (s), 1659 (m), 1579 (m), 1542 (m), 1354 (w), 1232 (w) cm⁻¹.

Method P

Synthesis of N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(4-methylphenyl)urea (Example 44)

Step 1

To a solution of methyl cyanoacetate (4.00 g, 40.4 mmol), sulfur (1.29 g, 40.4 mmol) and DMF (20 mL) at room temp. was added Et₃N (3.04 mL, 21.8 mmol). 3,3-Dimethylbutyraldehyde (5.08 g, 40.4 mmol) was added and the mixture was stirred 1 h before being poured into water (200 mL). Solids were removed by filtration and the filtrate was extracted with EtOAc. The organic layer was filtered through a plug of silica gel and concentrated under reduced pressure. The crude product was purified via flash chromatography to afford methyl 2-amino-5-tert-butylthiophene-3-carboxylate (4.19 g, 49%).

Step 2

Methyl 2-amino-5-tert-butylthiophene-3-carboxylate was condensed with 4-methylphenyl isocyanate in a manner similar to that described in Method A, Step 2 to produce N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea (0.029 g, 18%): mp 109-111° C.; ¹H NMR (CDCl₃) δ 1.38 (s, 9H), 2.34 (s, 3H), 3.81 (s, 3H), 6.75 (bs, 1H), 6.82 (s, 1H), 7.16 (d, J=8.1 Hz, 2H), 7.32 (d, J=8.5 Hz, 2H), 10.37 (s, 1H).

Selected Compound Synthesized Using Method P

N-(3-Carbomethoxy-5-tert-butyl-2-thienyl)-N′-(phenyl)urea (Example 43): mp 80-2° C.; ¹H NMR (CDCl₃) δ 1.36 (s, 9H), 3.83 (s, 3H), 6.73 (br s, 1H), 6.84 (s, 1H), 7.16 (t, J=7.4 Hz, 1H), 7.37 (app t, J=7.4 Hz, 2H), 7.52 (dd, J=8.1, 1.5 Hz 2H), 10.43 (br s, 1H); ¹³C NMR (CDCl₃) δ 32.2 (3C), 34.2, 51.7, 109.9, 117.0, 121.3 (2C), 124.8, 129.4 (2C), 137.7, 146.0, 149.6, 151.8, 166.4; EI-LRMS m/z 333 (M⁺).

Method Q

Synthesis of N-(3-carbomethoxy-5-isopropyl-2-thienyl)-N′-(4-methylphenyl)urea (Example 42)

Methyl 2-amino-5-isopropylthiophene-3-carboxylate was synthesized in a manner analogous to that described in Method P, Step 1.
To a solution of methyl 2-amino-5-isopropyllthiophene-3-carboxylate (0.20 g, 1.00 mmol) in anh. CH₂Cl₂(10 mL) was added phosgene (1.93M in toluene, 2.1 mL, 4.01 mmol, 4.0 equiv) and anh. pyridine (0.32 mL, 4.01 mmol, 4.0 equiv). The CHCl₃mixture was allowed to warm to room temp. and was stirred for 3 h. The resulting mixture was concentrated under reduced pressure. The residue was suspended in anh. toluene (10 mL) and p-toluidine (0.11 mg, 1.00 mmol, 1.0 equiv) was added. The resulting mixture was stirred overnight then separated between EtOAc (50 mL) and H₂O (50 mL). The organic phase was washed with a 1M HCl solution (2×25 mL), a saturated NaHCO₃solution (2×20 mL) and a saturated NaCl solution (2×25 mL), dried (MgSO₄) and concentrated under reduced pressure. The residue was purified by rotary chromatography (CH₂Cl₂), followed by preparative HPLC (SiO₂, 10% EtOAc/hexane) to give N-(3-carbomethoxy-5-isopropyl-2-thienyl)-N′-(4-methylphenyl)urea (0.15 g, 45%): mp 49-51° C.; ¹H NMR (CDCl₃) δ 1.29 (d, J=6.6 Hz, 6H), 2.34 (s, 3H), 3.02 (sept d, J=6.4, 1.1 Hz, 1H), 3.80 (s, 3H), 6.81 (s, 1H), 6.96 (br s, 1H), 7.17 (d, J=8.5 Hz, 2H), 7.32 (d, J=8.5 Hz, 2H), 10.4 (s, 1H); FAB-LRMS m/z 333 (M+H).

Selected Compound Synthesized Using Method Q

N-(3-Carbomethoxy-5-isopropyl-2-thienyl)-N′-(phenyl)urea (Example 41): mp 64-5° C.; ¹H NMR (CDCl₃) δ 1.29 (d, J=7.0 Hz, 6H), 3.02 (sept d, J=6.8, 1.1 Hz, 1H), 3.80 (s, 3H), 6.82 (d, J=1.1 Hz, 1H), 7.07 (br s, 1H), 7.16 (t, J=7.4 Hz, 1H), 7.37 (app t, J=7.9 Hz, 2H), 7.46 (dd, J=8.8, 1.5 Hz, 2H), 10.4 (s, 1H); FAB-LRMS m/z 319 (M+H).

Method R

Synthesis of N-(2-carboxy-5-tert-butyl-3-thienyl)-N′-(3,4-dichlorophenyl)urea (Example 66)

Step 1

A mixture of methyl 5-tert-butyl-3-aminothiophene-2-carboxylate (6.39 g, 30.0 mmol) and KOH (5.04 g, 90.0 mmol) in aqueous MeOH (1:1; 40 mL) was stirred at 80-90° C. for 6 h and the resulting clear solution was concentrated under reduced pressure. The gummy yellow residue was dissolved in H₂O (500 mL), treated with a phosgene solution (20% in toluene; 60 mL) dropwise over 2 h and stirred at room temp. overnight. The resulting yellow solids were removed by filtration, triturated with acetone (30 mL), and dried under reduced pressure to, afford 7-tert-butyl-2H-thieno[3,2-d]oxazine-2,4(1H)-dione (4.25 g, 63%): ¹H-NMR (CDCl₃) δ 1.38 (s, 9H), 2.48 (s, 1H), 6.75 (s, 1H); FAB-MS m/z (rel abundance) 226 ((M+H)⁺, 100%).

Step 2

To a solution of 7-tert-butyl-2H-thieno[3,2-d]oxazine-2,4(1H)-dione (0.18 g, 0.80 mmol) in THF (6 mL) was added 3,4-dichloroaniline (0.14 g, 0.86 mmol). The resulting mixture was stirred at 70° C. for 4 h, treated with Dowex 50WX2 resin (0.060 g) and poly(4-(4-hydroxymethylphenoxy)methylstyrene) resin (0.4 g) and stirred at 70° C. for an additional min. The resulting slurry was filtered, and the filtrate was concentrated under reduced pressure to give N-(2-carboxy-5-tert-butyl-3-thienyl)-N′-(3,4-dichlorophenyl)urea (0.061 g, 20%): HPLC ES-MS m/z (rel abundance) 386 ((M+H)⁺).

Method S

Synthesis of N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(3-methylphenyl)urea (Example 122)

Step 1

To a solution of trichloromethyl chloroformate (diphosgene; 7.0 g, 35.3 mmol) in CH₂Cl₂(100 μL) was added methyl 2-amino-5-tert-butylthiophene-3-carboxylate (5.0 g, 23.5 mmol) and pyridine (2.8 g, 35.3 mmol). The reaction mixture was heated to the reflux temp. for 10 h, filtered through a pad of silica, and concentrated under reduced pressure. The residue was dissolved in toluene and the resulting solution was concentrated under reduced pressure to give 3-methoxycarbonyl-5-tert-butylthiophene-2-isocyanate contaminated with a side product. 3-Methoxycarbonyl-5-tert-butylthiophene-2-isocyanate: ¹H-NMR (CDCl₃) δ 1.34 (s, 9H), 3.88 (s, 3H), 6.95 (s, 1H). Side product: ¹H-NMR (CDCl₃) d 1.37 (s, 9H), 3.89 (s, 3H), 6.88 (s, 1H), 10.92 (br s, 1H). This material was used in the next step without further purification.

Step 2

A solution of 3-methoxycarbonyl-5-tert-butylthiophene-2-isocyanate in toluene (0.16M, 2.5 mL 0.4 mmol) was added to 3-methylaniline (0.053 g, 0.5 mmol). The resulting mixture was stirred at 60° C. for 4 h, cooled to room temp., then treated with a 2M H₂SO₄solution (0.7 mL). EtOAc (4 mL) was added and the mixture was stirred vigorously. The mixture was passed through a filtration cartridge (0.8 g Extrelute® and 3 g silica gel) with the aid of EtOAc (8 mL), then concentrated under reduced pressure (speedvac: 2 h at 43° C.; 1 h at 60° C.) to afford N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(3-methylphenyl)urea (0.11 g, 80%): ¹H-NMR (CDCl₃) δ 1.35 (s, 9H), 2.36 (s, 3H), 3.82 (s, 3H), 6.82 (s, 1H), 6.93-7.01 (m, 2H), 7.13-7.29 (m, 2H), 7.35 (br s, 1H), 10.44 (s, 1H).

Method T

Synthesis of N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(4-dimethylaminophenyl)urea (Example 142)

A solution of 3-methoxycarbonyl-5-tert-butylthiophene-2-isocyanate in toluene (0.16M, 2.5 mL 0.4 mmol) was added to 4-(N,N-dimethylamino)aniline (0.054 g, 0.4 mmol). The reaction mixture was stirred at 60° C. for 4 h, then concentrated under reduced pressure (speedvac: 2 h at 43° C.; 1 h at 60° C.). The crude product was purified by flash chromatography (SiO₂, EtOAc/pet. ether) to afford N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(4-dimethylaminophenyl)urea (0.099 g, 66%): ¹H-NMR (CDCl₃) δ 1.35 (s, 9H), 3.0 (br s, 6H), 3.75 (s, 3H), 6.6-7.0 (m, 3H), 7.1-7.5 (m, 3H), 10.25 (br s, 1H).

Method U

Synthesis of N-(3-carbamoyl-5-tert-butyl-2-thienyl)-N′-(4-methylphenyl)urea (Example 119)

Step 1

A mixture of α-cyanoacetamide (1.68 g, 20 mmol), sulfur (0.64 g, 20 mmol) and 3,3-dimethylbutanal (2.0 g, 20 mmol) in MeOH (20 mL) was heated to the reflux temp. and morpholine (1.74 g, 20 mmol) was added within 10 min. The reaction mixture was stirred at the reflux temp for 8.5 h, then concentrated under reduced pressure The residue was purified by flash chromatography (50% EtOAc/50% pet. ether) to give 2-amino-5-tert-butylthiophene-3-carboxamide (2.94 g, 74%): ¹H-NMR (CDCl₃) δ 1.3 (s, 9H), 5.48 (br s, 4H), 6.37 (s, 1H).

Step 2

A solution of 2-amino-5-tert-butylthiophene-3-carboxamide (0.14 g, 0.7 mmol) and p-tolyl isocyanate (0.093 g, 0.7 mmol) in toluene (5 mL) was stirred at 60° C. overnight. The reaction mixture was separated between with water (10 mL) and EtOAc (10 mL). The aqueous phase was back-extracted with EtOAc (3×10 mL), and the combined organic phases were washed with a saturated NaCl solution (25 mL), dried (Na₂SO₄), and concentrated under reduced pressure. The residue was purified by chromatography (SiO₂, gradient from 20% EtOAc/80% pet. ether to 30% EtOAc/70% pet ether) to give N-(3-carbamoyl-5-tert-butyl-2-thienyl)-N′-(4-methylphenyl)urea (0.092 g, 40%): ¹H-NMR (CDCl₃) δ 1.38 (s, 9H), 2.32 (s, 3H), 5.58 (br s, 2H), 6.53 (s, 1H), 7.13 (app d; 2H), 7.35 (app d, 2H), 7.45 (br, 1H), 11.23 (br s, 1H).
The following compounds have been synthesized according to the general methods listed above:

TABLE 1

3-Urido Thiophenes

				mp	TLC	TLC		MS
#	R²	R⁵	A	(° C.)	(R_f)	Conditions	MS	Source	Method

1	CO₂Me	iPr	C₆H₅	108-10					A
2	CO₂Me	tert-Bu	C₆H₅	106-8					A
3	CO₂iPr	tert-Bu	C₆H₅	65-7					D
4	CO₂H	tert-Bu	4-MeC₆H₄				333	FAB	H
							(M + H)
5	CO₂Me	tert-Bu	4-MeC₆H₄	124-6					A
6	CO₂Et	tert-Bu	4-MeC₆H₄				360	EI	D
							(M⁺)
53	CO₂Pr-n	tert-Bu	4-MeC₆H₄	59-66	0.38	10% EtOAc/	375	FAB	E
						90% hex	(M + H)
7	CO₂iPr	tert-Bu	4-MeC₆H₄	72-86	0.34	10% EtOAc/	375	FAB	E
						90% hex	(M + H)
8	CO₂All	tert-Bu	4-MeC₆H₄	52-62	0.34	10% EtOAc/	373	FAB	E
						90% hex	(M + H)
9	CO₂Me	tert-Bu	3-MeC₆H₄	70-2			347	FAB	B
							(M + H)
54	CO₂Me	tert-Bu	4-FC₆H₄	160-2	0.45	20% EtOAc/	351	FAB	B
						80% hex	(M + H)
10	CO₂Me	tert-Bu	2-HOC₆H₄	75-7					B
11	CO₂Me	tert-Bu	2-H₂NC₆H₄				348	FAB	C
							(M + H)
13	CO₂Me	tert-Bu	3,4-Me₂C₆H₃	68-71					A

14	CO₂Me	tert-Bu		118-20			353 (M + H)	FAB	J

15	CO₂Me	tert-Bu					353 (M + H)	FAB	J

16	CO₂Me	tert-Bu		188-9			381 (M + H)	FAB	B

17	CO₂Me	tert-Bu		109-11					A

18	CO₂Me	tert-Bu		181-2					B

19	CO₂Me	tert-Bu		92-3					B

55	CO₂Me	tert-Bu	4-ClC₆H₄	150-2					B
56	CO₂Me	tert-Bu	4-HOC₆H₄	198-9					B
57	CO₂Me	tert-Bu	4-H₂NC₆H₄		0.06	20% EtOAc/			C
						80% hex
58	CO₂Me	tert-Bu	4-EtC₆H₄				361	FAB	B
							(M + H)

67	CO₂Me	tert-Bu		131-5	0.30	30% EtOAc/ 70% hex	399 (M + H)	FAB	B

68	CO₂Me	tert-Bu		112	0.41	35% EtOAc/ 65% hex	399 (M + H)	FAB	B

69	CO₂Me	tert-Bu		110	0.37	25% EtOAc/ 65% hex	399 (M + H)	FAB	B

70	CO₂Me	tert-Bu	3-MeO₂CC₆H₄		0.24	20% Et₂O/	405	EI	B
						80% pet	(M + H)
						ether
71	CO₂Me	tert-Bu	2,3-Cl₂C₆H₃		0.44	20% Et₂O/	401	CI	B
						80% pet	(M + H)
						ether

76	CO₂Me	tert-Bu			0.11	20% Et₂O/ 80% pet ether	417 (M + H)	EI	B

22	C(O)NHMe	tert-Bu	4-MeC₆H₄	202-4					F or G
23	C(O)NHMe	tert-Bu	4-EtC₆H₄	101-4	0.18	20% EtOAc/	360	FAB	G
						80% hex	(M + H)
24	C(O)NHMe	tert-Bu	4-iPrC₆H₄	113-20	0.20	20% EtOAc/	374	FAB	G
						80% hex	(M + H)
25	C(O)NHMe	tert-Bu	4-FC₆H₄	203-4	0.61	5% MeOH/	349	EI	F or G
						95% CH₂Cl₂	(M⁺)
26	C(O)NHMe	tert-Bu	3,4-Me₂C₆H₃	180-2					G
27	C(O)NHMe	tert-Bu	2,4-Me₂C₆H₃	195-6			359	EI	G
							(M⁺)
28	C(O)NHMe	tert-Bu	3-Cl-4-MeC₆H₃	178-9			379	EI	G
							(M⁺)
29	C(O)NHMe	tert-Bu	3-F-4-MeC₆H₃	182-3			364	FAB	G
							(M + H)
30	C(O)NHMe	tert-Bu	3-Cl-4-FC₆H₃	203-4			386	FAB	G
							(M + H)
31	C(O)NHMe	tert-Bu	2,4-F₂C₆H₃	213-5					G
59	C(O)NHMe	tert-Bu	3,4-F₂H₆H₃				368	FAB	G
							(M + H)
60	C(O)NHMe	tert-Bu	2-F-4-MeC₆H₃				364	FAB	G
							(M + H)
61	C(O)NHMe	tert-Bu	2-Cl-4-MeC₆H₃				380	FAB	G
							(M + H)
62	C(O)NHMe	tert-Bu	2,3,4-Me₃C₆H₂		0.88	50% EtOAc/	374	FAB	G
						50% hex	(M + H)
63	C(O)NHMe	tert-Bu	3-Me-4-FC₆H₃				364	FAB	G
							(M + H)
64	C(O)NHMe	tert-Bu	2-Cl-4-FC₆H₃				384	FAB	G
							(M + H)
65	C(O)NHMe	tert-Bu	2-Me-4-FC₆H₃				364	FAB	G
							(M + H)
66	CO₂H	tert-Bu	3,4-Cl₂C₆H₃				387	HPLC	R
							(M + H)	ES-MS

TABLE 2

3-Urido Furans

				mp	TLC	TLC		MS
#	R²	R⁵	A	(° C.)	(R_f)	Conditions	MS	Source	Method

32	CO₂Me	tert-Bu	4-MeC₆H₄	78-9	0.46	20% EtOAc/	331	FAB	K, L-1
						80% hex	(M + H)		or L-2
33	CO₂Me	tert-Bu	4-FC₆H₄	81-2	0.37	20% EtOAc/	335	FAB	L-1 or
						80% hex	(M + H)		L-2
34	CO₂Me	tert-Bu	2,3-Cl₂C₆H₄	195-7	0.58	20% EtOAc/	385	HPLC	L-1 or
						80% hex	(M + H)	ES-MS	L-2
72	CO₂Me	tert-Bu	3,4-Cl₂C₆H₄	83-8	0.19	10% EtOAc/	385	FAB	L-1 or
				(dec)		90% hex	(M + H)		L-2
35	C(O)NHMe	tert-Bu	4-MeC₆H₄	190-3	0.25	20% EtOAc/	330	FAB	M
						80% hex	(M + H)
36	C(O)NHMe	tert-Bu	4-FC₆H₄	109-11	0.21	20% EtOAc/	334	FAB	M
						80% hex	(M + H)

TABLE 3

3-Urido Pyrroles

					mp		MS
#	R¹	R²	R⁵	A	(° C.)	MS	Source	Method

37	H	CO₂Me	tert-Bu	C₆H₅	262-3	316	FAB	N-1 or
					(dec)	(M + H)		N-2
38	H	CO₂Me	tert-Bu	4-MeC₆H₄	257-8	330	FAB	N-1 or
						(M + H)		N-2
39	H	CO₂Me	tert-Bu	3,4-Cl₂C₆H₃	177-8	384	FAB	N-1 or
						(M + H)		N-2
73	H	CO₂Me	tert-Bu	2,3-Cl₂C₆H₃	194-6	384	FAB	N-2
						(M + H)

74	H	CO₂Me	tert-Bu		195-6	366 (M + H)	FAB	N-2

75	H	CO₂Me	tert-Bu	4-FC₆H₄	214-46			N-2

76	H	CO₂Me	tert-Bu		169-70	418 (M + H)	FAB	N-2

78	H	CO₂Me	tert-Bu	2,4-F₂C₆H₃	233-4	352	FAB	N-2
						(M + H)
79	H	CO₂Me	tert-Bu	3-FC₆H₄	245-6	333	EI	N-2
					(dec)	(M⁺)
80	H	CO₂Me	tert-Bu	2-ClC₆H₄	252-3	350	FAB	N-2
						(M + H)
81	H	CO₂Me	tert-Bu	3,5-Cl₂C₆H₃	169-70	384	FAB	N-2
						(M + H)
82	H	CO₂Me	tert-Bu	3-ClC₆H₄	177-8	350	FAB	N-2
						(M + H)
83	H	CO₂Me	tert-Bu	2-FC₆H₄	242-3			N-2

84	H	CO₂Me	tert-Bu		233-4	336 (M + H)	FAB	N-2

85	H	CO₂Me	tert-Bu	3,5-Me₂C₆H₃	228-9	344	FAB	N-2
						(M + H)
86	H	CO₂Me	tert-Bu	2-MeC₆H₄	191-2	330	FAB	N-2
						(M + H)

87	H	CO₂Me	tert-Bu		242-3	355 (M + H)	FAB	N-2

88	H	CO₂Me	tert-Bu		245-6	355 (M + H)	FAB	N-2

89	H	CO₂Me	tert-Bu	3-MeC₆H₄	191-2	330	FAB	N-2
						(M + H)

90	H	CO₂Me	tert-Bu		210-1	366 (M + H)	FAB	N-2

91	H	CO₂Me	tert-Bu	3-Cl-4-FC₆H₃	193-4	368	FAB	N-2
						(M + H)
92	H	CO₂Me	tert-Bu	3-Cl-4-	185-6	364	FAB	N-2
				MeC₆H₃		(M + H)
93	H	CO₂Me	tert-Bu	2-Me-4-	226-7	364	FAB	N-2
				ClC₆H₃		(M + H)
94	H	CO₂Me	tert-Bu	2-Me-5-	196-7			N-2
				ClC₆H₃
95	H	CO₂Me	tert-Bu	2,4-Me₂C₆H₃	258-9			N-2
96	H	CO₂Me	tert-Bu	3,4-Me₂C₆H₃	195-6			N-2
97	H	CO₂Me	tert-Bu	2,5-F₂C₆H₃	228-30			N-2
98	H	CO₂Me	tert-Bu	4-Me₂NC₆H₄	235-7	358	EI	N-2
						(M⁺)
99	H	CO₂Me	tert-Bu	4-H₂NC₆H₄	242-4	331	FAB	N-2
						(M + H)

100	H	CO₂Me	tert-Bu		192-4	355 (M⁺)	EI	N-2

105	H	CO₂Me	tert-Bu		230-1	367 (M + H)	FAB	N-2

106	H	CO₂Me	tert-Bu	2-BrC₂H₄	253-4	394	FAB	N-2
						(M + H)
107	H	CO₂Me	tert-Bu	4-BrC₆H₄	248-9	394	FAB	N-2
						(M + H)
108	H	CO₂Me	tert-Bu	2,4-Cl₂C₆H₃	200-1	383	EI	N-2
						(M⁺)
109	H	CO₂Me	tert-Bu	4-tert-BuC₆H₄	188-91	372	FAB	N-2
						(M + H)
110	H	CO₂Me	tert-Bu	4-iPrOC₆H₄	139-40	374	FAB	N-2
						(M + H)
111	H	CO₂Me	tert-Bu	4-ClC₆H₄	257-8	350	FAB	N-2
					(dec)	(M + H)
112	H	CO₂Me	tert-Bu	3-F₃CC₆H₄	138-9	384	FAB	N-2
						(M + H)
113	H	C(O)NHMe	tert-Bu	4-MeC₆H₄	164-6	329	FAB	N-3
						(M + H)
114	H	C(O)NHMe	tert-Bu	2,3-Cl₆C₆H₃	227-8	383	FAB	N-3
						(M + H)

115	H	C(O)NHMe	tert-Bu		177-8	365 (M + H)	FAB	N-3

40	Me	CO₂Me	tert-Bu	4-MeC₆H₄	171-2	343	EI	O
						(M⁺)
101	Me	CO₂Me	tert-Bu	2,3-Cl₂C₆H₄	94-7	398	FAB	O
						(M + H)

102	Me	CO₂Me	tert-Bu		178-9	380 (M + H)	FAB	O

103	Me	CO₂Me	tert-Bu	C₆H₅	175-6	330	FAB	O
						(M + H)
104	Me	CO₂Me	tert-Bu	4-FC₆H₄	211-2	347	EI	O
						(M⁺)

TABLE 4

2-Urido Thiophenes

				mp	TLC	TLC		MS
#	R³	R⁵	A	(° C.)	(R_f)	Conditions	MS	Source	Method

41	CO₂Me	iPr	C₆H₅	64-5			319	FAB	Q
							(M + H)
42	CO₂Me	iPr	4-MeC₆H₄	49-51			333	EI	Q
							(M⁺)
43	CO₂Me	tert-Bu	C₆H₅	80-2			333	EI	P
							(M⁺)
44	CO₂Me	tert-Bu	4-MeC₆H₄	109-11					P

116	CO₂Me		4-MeC₆H₄	141-2					Q

117	CO₂Me	tert-Bu			0.20	20% Et₂O/ 80% pet ether	381 (M + H)	EI	S

118	CO₂Me	tert-Bu	2,3-Cl₂C₆H₃		0.45	20% Et₂O/	401	CI	S
						80% pet	(M + H)
						ether
119	C(O)NH₂	tert-Bu	4-MeC₆H₄		0.19	50% Et₂O/	332	CI	U
						50% pet	(M + H)
						ether

120	CO₂Me	tert-Bu			0.13	20% Et₂O/ 80% pet ether	417 (M + H)	EI	S

121	CO₂Me	tert-Bu	2-MeC₆H₄		0.32	20% Et₂O/	347	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
122	CO₂Me	tert-Bu	3-MeC₆H₄		0.34	20% Et₂O/	347	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
123	CO₂Me	tert-Bu	4-iPrC₆H₄		0.38	20% Et₂O/	375	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
124	CO₂Me	tert-Bu	3-MeOC₆H₄		0.24	20% Et₂O/	363	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
125	CO₂Me	tert-Bu	4-MeOC₆H₄		0.18	20% Et₂O/	363	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
126	CO₂Me	tert-Bu	4-n-BuOC₆H₄		0.32	20% Et₂O/	405	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
127	CO₂Me	tert-Bu	2-HOC₆H₄		0.49	50% Et₂O/	349	HPLC	S
						50% pet	(M + H)	ES-MS
						ether
128	CO₂Me	tert-Bu	3-HOC₆H₄		0.43	50% Et₂O/	349	HPLC	S
						50% pet	(M + H)	ES-MS
						ether
129	CO₂Me	tert-Bu	4-HOC₆H₄		0.38	50% Et₂O/	349	HPLC	S
						50% pet	(M + H)	ES-MS
						ether
130	CO₂Me	tert-Bu	2,4-MeC₂C₆H₃		0.34	20% Et₂O/	361	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
131	CO₂Me	tert-Bu	2,5-Me₂C₆H₃		0.36	20% Et₂O/	361	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
132	CO₂Me	tert-Bu	3,4-Me₂C₆H₃		0.34	20% Et₂O/	347	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
133	CO₂Me	tert-Bu	3,5-Me₂C₆H₃		0.36	20% Et₂O/	347	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
134	CO₂Me	tert-Bu	2,3-F₂C₆H₃		0.44	20% Et₂O/	369	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
135	CO₂Me	tert-Bu	2,6-F₂C₆H₃		0.25	20% Et₂O/	369	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
136	CO₂Me	tert-Bu	2-FC₆H₄		0.42	20% Et₂O/	351	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
137	CO₂Me	tert-Bu	3-FC₆H₄		0.31	20% Et₂O/	351	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
138	CO₂Me	tert-Bu	4-FC₆H₄		0.31	20% Et₂O/	351	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
139	CO₂Me	tert-Bu	2-ClC₆H₄		0.41	20% Et₂O/	367	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
140	CO₂Me	tert-Bu	3-ClC₆H₄		0.31	20% Et₂O/	367	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
141	CO₂Me	tert-Bu	2,4-F₂C₆H₃		0.40	20% Et₂O/	369	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
142	CO₂Me	tert-Bu	4-Me₂NC₆H₃		0.45	50% Et₂O/	376	EI	T
						50% pet	(M + H)
						ether
143	CO₂Me	tert-Bu	2,5-F₂C₆H₃		0.39	20% Et₂O/	369	HPLC	S
						80% pet	(M + H)	ES-MS
						ether
144	C(O)NH₂	tert-Bu	2,3-Cl₂C₆H₃		0.46	40% Et₂O/	386	EI	U
						60% pet	(M⁺)
						ether

TABLE 5

2-Aminomethyl-3-urido Thiophenes

				mp		MS
#	R⁵	R⁹	A	(° C.)	MS	Source	Method

50	tert-Bu	C(O)CH₃	4-MeC₆H₄	203-5	360	FAB	I
					(M + H)
51	tert-Bu	C(O)CH₂NH₂	4-MeC₆H₄	93-6			I
52	tert-Bu	C(O)CH₂NHBOC	4-MeC₆H₄	174-6			I

BIOLOGICAL EXAMPLES

P38 Kinase Assay

The in vitro inhibitory properties of compounds were determined using a p38 kinase inhibition assay. P38 activity was detected using an in vitro kinase assay run in 96-well microtiter plates. Recombinant human p38 (0.5 μg/mL) was mixed with substrate (myelin basic protein, 5 μg/mL) in kinase buffer (25 mM Hepes, 20 mM MgCl₂and 150 mM NaCl) and compound. One μCi/well of ³³P-labeled ATP (10 μM) was added to a final volume of 100 μL. The reaction was run at 32° C. for 30 min. and stopped with a 1M HCl solution. The amount of radioactivity incorporated into the substrate was determined by trapping the labeled substrate onto negatively charged-glass fiber filter paper using a 1% phosphoric acid solution and read with a scintillation counter. Negative controls included substrate plus ATP alone.
All compounds exemplified displayed p38 IC₅₀s of between 1 nM and 10 μM.

LPS Induced TNFα Production in Mice:

The in vivo inhibitory properties of selected compounds were determined using a murine LPS induced TNFα production in viva model. BALB/c mice (Charles River Breeding Laboratories; Kingston, N.Y.) in groups of ten were treated with either vehicle or compound by the route noted. After one hour, endotoxin (E. coli lipopolysaccharide (LPS) 100 μg) was administered intraperitoneally (i.p.). After 90 min, animals were euthanized by carbon dioxide asphyxiation and plasma was obtained from individual animals by cardiac puncture ionto heparinized tubes. The samples were clarified by centrifugation at 12,500×g for 5 min at 4° C. The supernatants were decanted to new tubes, which were stored as needed at −20° C. TNFα levels in sera were measured using a commercial murine TNF ELISA kit (Genzyme).
The preceeding examples can be repeated with similar success by substituting the generically or specifically described reactants and/or operating conditions of this invention for those used in the preceeding examples

Claims

1. A method for the treatment of a disease, other than cancer, mediated by p38, comprising administering a compound of Formula I

wherein

A is optionally substituted C_6-12-aryl or C_5-12-heteroaryl;

B is

R¹is H or C_1-4-alkyl;

R²and R³are each independently halogen, —COOR¹, —CN, —CONR⁷R⁸, or —CH₂NHR⁹;

R⁵is C_3-5-alkyl;

R⁶is C_1-6-alkyl;

R⁷is hydrogen;

R⁸is methyl;

R⁹is hydrogen, methyl or —CO—R¹⁰; and

R¹⁰is hydrogen or methyl optionally substituted by NR⁶ ₂or COOR⁶.

2. A method according to claim 1, wherein the disease is mediated by a cytokine or protease regulated by p38.

3. A method according to claim 1, wherein A is C_6-12-aryl or C_5-12-heteroaryl optionally substituted by C_1-4-alkyl, C_3-6-cycloalkyl, halogen, —OH, —OR¹, or —NR¹ ₂.

4. A method according to claim 1, wherein R⁵is isopropyl or tert-butyl.

5. A method according to claim 1, wherein A is phenyl, 1,3,4-thiadiazol-2- or -5-yl, 7-indolyl, or 8-quinolinyl, each optionally substituted by C_1-4-alkyl, C_3-6-cycloalkyl, halogen, —OH, —OR¹, or —N¹ ₂.

6. A method according to claim 1, wherein A is 4-methylphenyl, 4-fluorophenyl, 5-methyl-2-thienyl, 4-methyl-2-thienyl, or 5-cyclopropyl-1,3,4-thiadiazol-2-yl.

7. A method according to claim 1, wherein R²or R³is —COOR¹or CH₂NHR⁹, and R¹is C_1-4-alkyl, R⁷is H, and R⁸is C_1-10-alkyl.

8. A method according to claim 1, comprising administering an amount of a compound of Formula I effective to inhibit p38.

9. A method according to claim 2, wherein the disease is mediated by TNFα, MMP-1, MMP-3, IL-1, IL-6, or IL-8.

10. A method according to claim 1, wherein the disease is an inflammatory or immunomodulatory disease.

11. A method according to claim 1, wherein the disease is rheumatoid arthritis, osteoperosis, asthma, septic shock, inflammatory bowel disease, or the result of host-versus-graft reactions.

12. A method according to claim 1, wherein the compound is N-(2-carbomethoxy-5-isopropyl-3-thienyl)-N′-(phenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-fluorophenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(3-methylphenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(5-cyclopropyl-2-thiadiazolyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(2-aminophenyl)urea; N-(2-carboethoxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea; N-(2-(carbo-1-prop-2-enyloxy)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea; N-(2-(carbo-2-propyloxy)-5-tert-butyl-3-thienyl)-N-(4-methylphenyl)urea; N-(2-(carbo-1-propyloxy)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea; N-(2-methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea; N-(2-methylcarbamoyl-5-tert-butyl-3-thienyl)-N′-(4-fluorophenyl)urea; N-(2-methylcarbamoyl)-5-tert-butyl-3-thienyl)-N′-(4-ethylphenyl)urea; N-(2-methylcarbamoyl)-5-tert-butyl-3-thienyl)-N′-(4-isopropylphenyl)urea; N-(2-methylcarbamoyl)-5-tert-butyl-3-thienyl)-N′-(2,4-dimethylphenyl)urea; N-(2-methylcarbamoyl)-5-tert-butyl-3-thienyl)-N′-(3-chloro-4-methylphenyl)urea; N-(2-methylcarbamoyl)-5-tert-butyl-3-thienyl)-N′-(3-fluoro-4-methylphenyl)urea; N-(2-methylcarbamoyl)-5-tert-butyl-3-thienyl)-N′-(3-chloro-4-fluorophenyl)urea; N-(2-carboxy-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea; N-(2-(N-glycylaminomethyl)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea; N-(2-(N—(N-carbo-tert-butoxyglycyl)aminomethyl)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea; N-(2-(N-acetylaminomethyl)-5-tert-butyl-3-thienyl)-N′-(4-methylphenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(4-methyl-2-thienyl)urea; or N-(2-carbomethoxy-5-tert-butyl-3-thienyl)-N′-(5-methyl-2-thienyl)urea.

13. A method according to claim 1, wherein the compound is N-(2-carbomethoxy-5-tert-butyl-3-furyl)-N′-(4-methylphenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-furyl)-N′-(4-fluorophenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-furyl)-N′-(2,3-dichlorophenyl)urea; N-(2-methylcarbamoyl-5-tert-butyl-3-furyl)-N′-(4-fluorophenyl)urea; or N-(2-methylcarbamoyl-5-tert-butylfuryl)-N′-(4-methylphenyl)urea.

14. A method according to claim 1, wherein the compound is N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(4-methylphenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(phenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(2,3-dichlorophenyl)urea; or N—(N-methyl-2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(5-methyl-2-thienyl)urea.

15. A method according to claim 1, wherein the compound is N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(4-methylphenyl)urea; N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(phenyl)urea; N-(3-carbomethoxy-5-isopropyl-2-thienyl)-N′-(4-methylphenyl)urea; or N-(3-carbomethoxy-5-isopropyl-2-thienyl)-N′-(phenyl)urea.

16. A method according to claim 1, wherein the compound is N-(2-methylcarbamoyl-5-tert-butyl-3-furyl)-N′-(3,4-dichlorophenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(2,3-dichlorophenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(3,4-dichlorophenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(1-naphthyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(2-naphthyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(3-chloro-4-fluorophenyl)urea; N-(2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(3-chloro-4-methylphenyl)urea; N-(2-methylcarbamoyl-5-tert-butyl-3-pyrrolyl)-N′-(2,3-dichlorophenyl)urea; N-(2-methylcarbamoyl-5-tert-butyl-3-pyrrolyl)-N′-(1-naphthyl)urea; N—(N-methyl-2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(1-naphthyl)urea; N—(N-methyl-2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(2,3-dichlorophenyl)urea; N—(N-methyl-2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(4-methylphenyl)urea; N—(N-methyl-2-carbomethoxy-5-tert-butyl-3-pyrrolyl)-N′-(phenyl)urea; N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(3-methylphenyl)urea; N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(2,3-dichlorophenyl)urea; N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(2,3-dichloro-4-hydroxyphenyl)urea; N-(3-carbomethoxy-5-tert-butyl-2-thienyl)-N′-(3-methoxyphenyl)urea; or N-(3-carbamoyl-5-tert-butyl-2-thienyl)-N′-(4-methylphenyl)urea.