US20120226067A1

US20120226067A1 - Processes for intermediates for macrocyclic compounds

Info

Publication number: US20120226067A1
Application number: US13/412,148
Authority: US
Inventors: Eric Marsault; Luc Ouellet; Hamid R. Hoveyda
Original assignee: Individual
Current assignee: Individual
Priority date: 2003-06-18
Filing date: 2012-03-05
Publication date: 2012-09-06
Also published as: CA2528375C; ATE457995T1; EP2210612A3; US10040751B2; JP2007523853A; CA2528375A1; US20090137835A1; US20110245459A1; US20160221927A1; US20120226072A1; EP2210612B1; US7521420B2; ES2338789T3; US8129561B2; US20120165566A1; DK1633774T3; DE602004025569D1; US8497242B2; JP4928261B2; US20050054562A1

Abstract

The present invention is directed to novel macrocyclic compounds of formula (I) and their pharmaceutically acceptable salts, hydrates or solvates:

wherein R₁, R₂, R₃, R₄, R₅, R₆, n₁, m, p Z₁, Z₂, and Z₃are as describe in the specification. The invention also relates to compounds of of formula (I) which are antagonists of the motilin receptor and are useful in the treatment of disorders associated with this receptor and with or with motility dysfunction.

Description

RELATED APPLICATION INFORMATION

This application is a divisional application of U.S. patent application Ser. No. 12/273,648, filed Nov. 19, 2008, now U.S. Pat. No. 8,129,561, which is a continuation application of U.S. patent application Ser. No. 12/273,638, filed Nov. 19, 2008, which is a continuation application of U.S. patent application Ser. No. 10/872,142, filed Jun. 18, 2004, now U.S. Pat. No. 7,521,420, which claims the benefit of U.S. patent application Ser. No. 60/479,223, filed Jun. 18, 2003. The disclosure of each application is incorporated herein by reference in its entirety.

FIELD OF THE INVENTION

The present invention relates to novel conformationally-defined macrocyclic compounds, pharmaceutical compositions comprising same and intermediates used in their manufacture. More particularly, the invention relates to macrocyclic compounds that have been demonstrated to selectively antagonize the activity of the motilin receptor. The invention further relates to macrocyclic compounds useful as therapeutics for a range of gastrointestinal disorders, in particular those in which malfunction of gastric motility or increased motilin secretion is observed, such as hypermotilinemia, irritable bowel syndrome and dyspepsia.

BACKGROUND OF THE INVENTION

A number of peptide hormones are involved in the control of the different functions in the gastrointestinal (GI) tract, including absorption, secretion, blood flow and motility (Mulvihill, et al. in Basic and Clinical Endocrinology, 4^thedition, Greenspan, F. S.; Baxter, J. D., eds., Appleton & Lange: Norwalk, Conn., 1994, pp 551-570). Since interactions between the brain and GI system are critical to the proper modulation of these functions, these peptides can be produced locally in the GI tract or distally in the CNS.
One of these peptide hormones, motilin, a linear 22-amino acid peptide, plays a critical regulatory role in the GI physiological system though governing of fasting gastrointestinal motor activity. As such, the peptide is periodically released from the duodenal mucosa during fasting in mammals, including humans. More precisely, motilin exerts a powerful effect on gastric motility through the contraction of gastrointestinal smooth muscle to stimulate gastric emptying, decrease intestinal transit time and initiate phase III of the migrating motor complex in the small bowel (Itoh, Z., Ed., Motilin, Academic Press: San Diego, Calif., 1990, ASIN: 0123757304; Nelson, D. K. Dig. Dis. Sci. 1996, 41, 2006-2015; Peeters, T. L.; Vantrappen, G.; Janssens, J. Gastroenterology 1980, 79, 716-719).
Motilin exerts these effects through receptors located predominantly on the human antrum and proximal duodenum, although its receptors are found in other regions of the GI tract as well (Peeters, T. L.; Bormans, V.; Vantrappen, G. Regul. Pept. 1988, 23, 171-182). Therefore, motilin hormone is involved in motility of both the upper and lower parts of the GI system (Williams et al. Am. J. Physiol. 1992, 262, G50-G55). In addition, motilin and its receptors have been found in the CNS and periphery, suggesting a physiological role in the nervous system that has not yet been definitively elucidated (Depoortere, I.; Peeters, T. L. Am. J. Physiol. 1997, 272, G994-999 and O'Donohue, T. L. et al. Peptides 1981, 2, 467-477). For example, motilin receptors in the brain have been suggested to play a regulatory role in a number of CNS functions, including feeding and drinking behavior, micturition reflex, central and brain stem neuronal modulation and pituitary hormone secretion (Itoh, Z. Motilin and Clinical Applications. Peptides 1997, 18, 593-608; Asakawa, A.; Inui, A.; Momose, K.; et al., M. Peptides 1998, 19, 987-990 and Rosenfeld, D. J.; Garthwaite, T. L. Physiol. Behay. 1987, 39, 753-756). Physiological studies have provided confirmatory evidence that motilin can indeed have an effect on feeding behavior (Rosenfeld, D. J.; Garthwaite, T. L. Phys. Behay. 1987, 39, 735-736).
The recent identification and cloning of the human motilin receptor (WO 99/64436) has simplified and accelerated the search for agents which can modulate its activity for specific therapeutic purposes.
Due to the critical and direct involvement of motilin in control of gastric motility, agents that either diminish (hypomotility) or enhance (hypermotility) the activity at the motilin receptor, are a particularly attractive area for further investigation in the search for new effective pharmaceuticals towards these indications.
Peptidic agonists of the motilin receptor, which have clinical application for the treatment of hypomotility disorders, have been reported (U.S. Pat. No. 5,695,952; 5,721,353; 6,018,037; 6,380,158; 6,420,521, U.S. Appl. 2001/0041791, WO 98/42840; WO 01/00830 and WO 02/059141). Derivatives of erythromycin, commonly referred to as motilides, have also been reported as agonists of the motilin receptor (U.S. Pat. Nos. 4,920,102; 5,008,249; 5,175,150; 5,418,224; 5,470,961; 5,523,401, 5,554,605; 5,658,888; 5,854,407; 5,912,235; 6,100,239; 6,165,985; 6,403,775).
Antagonists of the motilin receptor are potentially extremely useful as therapeutic treatments for diseases associated with hypermotility and hypermotilinemia, including irritable bowel syndrome, dyspepsia, gastroesophogeal reflux disorders, Crohn's disease, ulcerative colitis, pancreatitis, infantile hypertrophic pyloric stenosis, diabetes mellitus, obesity, malabsorption syndrome, carcinoid syndrome, diarrhea, atrophic colitis or gastritis, gastrointestinal dumping syndrome, postgastroenterectomy syndrome, gastric stasis and eating disorders leading to obesity.
A variety of peptidic compounds have been described as antagonists of the motilin receptor (Depoortere, I.; Macielag, M. J.; Galdes, A.; Peeters, T. L. Eur. J. Pharmacol. 1995, 286, 241-247; U.S. Pat. Nos. 5,470,830; 6,255,285; 6,586,630; 6,720,433; U.S. 2003/0176643; WO 02/64623). These peptidic antagonists suffer from the known limitations of peptides as drug molecules, in particular poor oral bioavailability and degradative metabolism.
Cyclization of peptidic derivatives is a method employed to improve the properties of a linear peptide both with respect to metabolic stability and conformational freedom. Cyclic molecules tend to be more resistant to metabolic enzymes. Such cyclic tetrapeptide motilin antagonists have been reported (Haramura, M. et al J. Med. Chem. 2002, 45, 670-675, U.S. 2003/0191053; WO 02/16404).
Other motilin antagonists, which are non-peptidic and non-cyclic in nature have also been reported (U.S. Pat. Nos. 5,972,939; 6,384,031; 6,392,040; 6,423,714; 6,511,980; 6,624,165; 6,667,309; U.S. 2002/0111484; 2001/041701; 2002/0103238; 2001/0056106, 2002/0013352; 2003/0203906 and 2002/0002192)
The macrocyclic motilin antagonists of the present invention comprise elements of both peptidic and non-peptidic structures in a combination which has not been pursued for this application previously.
Indeed, the structural features of antagonists of the present invention are different. In particular, within the known motilin antagonists which are cyclic peptides, it was found that such derivatives containing D-amino acids were devoid of activity. In contrast, for the tripeptidomimetic compounds of the present invention, the D-stereochemistry is required for two of the three building elements.
The motilin antagonists of the present invention are also distinct from the prior art in that they comprise a tether element to fulfill the dual role of controlling conformations and providing additional sites for interaction either through hydrophobic interactions, hydrogen bonding or dipole-dipole interactions.

SUMMARY OF THE INVENTION

In a first aspect, the present invention is directed to compounds of formula (I):
and pharmaceutically acceptable salts, hydrates or solvates thereof wherein:
Z₁, Z₂and Z₃are independently selected from the group consisting of O, N and NR₁₀, wherein R₁₀is selected from the group consisting of hydrogen, lower alkyl, and substituted lower alkyl;
R₁is independently selected from the group consisting of lower alkyl substituted with aryl, lower alkyl substituted with substituted aryl, lower alkyl substituted with heteroaryl and lower alkyl substituted with substituted heteroaryl;
R₂is hydrogen;
R₃is independently selected from the group consisting of alkyl and cycloalkyl with the proviso that when Z₁is N, R₃can form a four, five, six or seven-membered heterocyclic ring together with Z_1;
R₄is hydrogen;
R₅and R₆are independently selected from the group consisting of hydrogen, alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, heterocyclic, substituted heterocyclic, aryl, substituted aryl, heteroaryl and substituted heteroaryl, with the proviso that at least one of R₅and R₆is hydrogen;
X is selected from the group consisting of O, NR₈, and N(R₉)₂ ⁺;

- wherein R₈is selected from the group consisting of hydrogen, lower alkyl, substituted lower alkyl, formyl, acyl, carboxyalkyl, carboxyaryl, amido, sulfonyl, sulfonamido and amidino; and
- R₉is selected from the group consisting of hydrogen, lower alkyl, and substituted lower alkyl;
  m, n₁and p are independently selected from 0, 1 or 2; and
  T is a bivalent radical of formula II:

—U—(CH₂)_d—W—Y—Z—(CH₂)_e— (II)

- wherein d and e are independently selected from 0, 1, 2, 3, 4 or 5;
- wherein U is bonded to X of formula (I) and is —CH₂— or —C(═O)—;
- wherein Y and Z are each optionally present;
- W, Y and Z are independently selected from the group consisting of: —O—, —NR₂₈—, —S—, —SO—, —SO₂—, —C(═O)—, —C(═O)—O—, —O—C(═O)—, —C(═O)—NH—, —NH—C(═O)—, —SO₂—NH—, —NH—SO₂—, —CR₂₉R₃₀—, —CH═CH— with a configuration Z or E, and -GEC-, or from a ring structure independently selected from the group:

wherein any carbon atom contained within said ring structure, can be replaced by a nitrogen atom, with the proviso that if said ring structure is a monocyclic ring structure, it does not comprise more than four nitrogen atoms and if said ring structure is a bicyclic ring structure, it does not comprise more than six nitrogen atoms;
G₁and G₂each independently represent a covalent bond or a bivalent radical selected from the group consisting of —O—, —S—, —SO—, —SO₂—, —C(═O)—, —C(═O)—O—, —O—C(═O)—, —C(═O)NH—, —NH—C(═O)—, —SO₂—NH—, —NH—SO₂—, —CR₄₂R₄₃—, —CH═CH— with a configuration Z or E, and —C═C—;with the proviso that G₁is bonded closer to U than G₂;
K₁, K₂, K₃, K₄, K₆, K₁₅and K₁₆are independently selected from the group consisting of O, NR₄₄and S;
f is selected from 1, 2, 3, 4, 5 or 6;
R₃₁, R₃₂, R₃₈, R₃₉, R₄₈and R₄₉are independently selected from hydrogen, halogen, alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, heterocyclic, substituted heterocyclic, aryl, substituted aryl, heteroaryl, substituted heteroaryl, hydroxy, alkoxy, aryloxy, amino, halogen, formyl, acyl, carboxy, carboxyalkyl, carboxyaryl, amido, carbamoyl, guanidino, ureido, amidino, cyano, nitro, mercapto, sulfinyl, sulfonyl and sulfonamido; and
R₃₃, R₃₄, R₃₅, R₃₆, R₃₇, R₄₇, R₅₀and R₅₁are independently selected from hydrogen, halogen, alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, heterocyclic, substituted heterocyclic, aryl, substituted aryl, heteroaryl, substituted heteroaryl, hydroxy, alkoxy, aryloxy, oxo, amino, halogen, formyl, acyl, carboxy, carboxyalkyl, carboxyaryl, amido, carbamoyl, guanidino, ureido, amidino, cyano, nitro, mercapto, sulfinyl, sulfonyl and sulfonamido.
In a second aspect, the invention also proposes compounds of formula (1) which are antagonists of the motilin receptor .
In a third aspect, the invention proposes a method of treating a disorder associated with the motilin receptor or motility dysfunction in humans and other mammals, comprising administering a therapeutically effective amount of a compound of formula (1).
While the invention will be described in conjunction with example embodiments, it will be understood that it is not intended to limit the scope of the invention to such embodiment. On the contrary, it is intended to cover all alternatives, modifications and equivalents as may be included as defined by the appended claims.

DETAILED DESCRIPTION OF THE INVENTION

Preferably in formula (I), as depicted hereinabove, R₁is selected from the group consisting of —(CH₂)_qR₁₁, and —CHR₁₂R₁₃

- wherein q is 0, 1, 2 or 3; and
- R₁₁and R₁₂are independently selected from a ring structure from the following group:

- wherein any carbon atom in said ring structure can be replaced a nitrogen atom, with the proviso that if said ring structure is a monocyclic ring structure, it does not comprise more than four nitrogen atoms and if said ring structure is a bicyclic ring structure, it does not comprise more than six nitrogen atoms;
- A₁, A₂, A₃, A₄and A₅are each optionally present and are independently selected from the group consisting of halogen, alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, heterocyclic, substituted heterocyclic, aryl, substituted aryl, heteroaryl, substituted heteroaryl, hydroxy, alkoxy, aryloxy, amino, halogen, formyl, acyl, carboxy, carboxyalkyl, carboxyaryl, amido, carbamoyl, guanidino, ureido, amidino, cyano, nitro, mercapto, sulfinyl, sulfonyl and sulfonamido;
- B₁, B₂, B₃, and B₄are independently selected from NR₁₄, S or O, wherein R₁₄is selected from the group consisting of hydrogen, alkyl, substituted alkyl, formyl, acyl, carboxyalkyl, carboxyaryl, amido, sulfonyl and sulfonamido;
- R₁₃is as defined for as R₁₁and R₁₂or is selected from the group comprising lower alkyl, substituted lower alkyl, hydroxy, alkoxy, aryloxy, amino, carboxy, carboxyalkyl, carboxyaryl, and amido.
  wherein A₁, A₂, A₃, A₄and A₅are most preferably selected from halogen, trifluroromethyl, C_1-6alkyl or C_1-6alkoxy.

Preferably, R₁₁, R₁₂and R₁₃are selected from the group consisting of:
wherein R_aand R_bare chosen from the group consisting of Cl, F, CF₃, OCH₃, OH, and C(CH₃)₃and CH₃.
Also preferably, R₃in formula (I), is selected from the group consisting of:

- (CH₂),CH₃, —CH(CH₃)(CH₂)_tCH₃, —CH(OR₁₅)CH₃, —CH₂SCH₃—CH₂CH₂SCH₃, —CH₂S(═O)CH₃, —CH₂CH₂S(═O)CH₃, —CH₂S(═O)₂CH₃, —CH₂CH₂S(═O)₂CH₃, —(CH₂)_uCH(CH₃)₂, —C(CH₃)₃, and —(CH₂)_y—R₂₁, wherein:
  - s and u are independently selected from 0, 1, 2, 3, 4 or 5;
  - t is independently selected from 1, 2, 3 or 4;
  - y is selected from 0, 1, 2, 3 or 4;
  - R₁₅is selected from the group consisting of hydrogen, alkyl, substituted alkyl, formyl and acyl;
  - R₂₁is selected from a ring structure selected from the following group:

- - wherein any carbon atom in said ring structure can be replaced by a nitrogen atom, with the proviso that if said ring structure is a monocyclic ring structure, it does not comprise more than four nitrogen atoms and if said ring structure is a bicyclic ring structure, it does not comprise more than six nitrogen atoms;
  - z is selected from 1, 2, 3, 4 or 5;
  - E₁, E₂and E₃are each optionally present and are independently selected from the group consisting of halogen, alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, heterocyclic, substituted heterocyclic, aryl, substituted aryl, heteroaryl, substituted heteroaryl, hydroxy, alkoxy, aryloxy, amino, halogen, formyl, acyl, carboxy, carboxyalkyl, carboxyaryl, amido, carbamoyl, guanidino, ureido, amidino, cyano, nitro, mercapto, sulfinyl, sulfonyl and sulfonamido; and
  - J is optionally present and is selected from the group consisting of alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, heterocyclic, substituted heterocyclic, aryl, substituted aryl, heteroaryl, substituted heteroaryl, hydroxy, alkoxy, aryloxy, oxo, amino, halogen, formyl, acyl, carboxy, carboxyalkyl, carboxyaryl, amido, carbamoyl, guanidino, ureido, amidino, mercapto, sulfinyl, sulfonyl and sulfonamido.

The tether portion (T) of formula (I) is preferably selected from the group consisting of:
wherein L₁is O, NH or NMe; L₂is CH or N; L₃is CH or N; L₄is 0 or CH₂; L₅is CH or N is CR₅₂R₅₃or 0; R₄₆is H or CH₃;
R₅₂, R₅₃, R₅₄, R₅₅, R₅₆and R₅₇are independently selected from hydrogen, lower alkyl, substituted lower alkyl, hydroxy, alkoxy, aryloxy, amino, and oxo; or R₅₂together with R₅₃or R₅₄together with R₅₅or R₅₆together with R₅₇can independently form a three to seven-membered cyclic ring comprising carbon, oxygen, sulfur and/or nitrogen atoms;
(X) is the site of a covalent bond to X in formula (I); and
(Z₃) is the site of a covalent bond to Z₃in formula (I).
In a particularly preferred embodiment of the invention, there are provided compounds of formula (I) wherein m, n and p are O, X, Z₁, Z₂and Z₃are NH and R₂, R₄and R₅are hydrogen, represented by formula (III):
According to another aspect of the invention, there are provided compounds of formula (I) wherein when Z₁is a nitrogen atom, R₃forms a four, five, six or seven-membered heterocyclic ring together with Z₁,represented by formula (IV):
wherein said heterocyclic ring may contain a second nitrogen atom, or an oxygen, or sulfur atom;
n₂is selected from 0, 1, 2 or 3
R₇is optionally present and is selected from the group consisting of alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, heterocyclic, substituted heterocyclic, aryl, substituted aryl, heteroaryl, substituted heteroaryl, hydroxy, alkoxy, aryloxy, oxo, amino, halogen, formyl, acyl, carboxy, carboxyalkyl, carboxyaryl, amido, carbamoyl, guanidino, ureido, amidino, mercapto, sulfinyl, sulfonyl and sulfonamido.
It is to be understood, that in the context of the present invention, the terms amino, guanidine, ureido and amidino encompass substituted derivatives thereof as well.
Preferably, the invention provides a method of treating a disorder associated with hypermotility or hypermotilinemia in humans and other mammals comprising administering a therapeutically effective amount of a compound of formula (1).

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 depicts Scheme 1 presenting a general synthetic strategy to conformationally-defined macrocycles of the present invention.

FIG. 2 depicts the standard procedure for the synthesis of tether T8 of Example 16.

FIG. 3 depicts the standard procedure for the synthesis of tether T9 of Example 17.

FIG. 4 depicts the standard procedure for the synthesis of Ddz-propargylamine of Example 18.

FIG. 5A depicts the standard procedure for the synthesis of tether T10 of Example 19.

FIG. 5B depicts the second synthetic route to tether T10 of Example 19.

FIG. 6 depicts the standard procedure for the synthesis of Tether T11 of Example 20.

FIG. 7 depicts the standard procedure for the synthesis of tether T12 of Example 26.

FIG. 8 depicts the procedure for synthesis of PPh₃-DIAD adduct of Example 29-C.

FIG. 9 depicts the standard procedure for attachment of tethers via reductive amination of Example 30.

FIG. 10 depicts the standard procedure for the synthesis of tether T28 of Example 32.

FIG. 11 the standard procedure for the synthesis of tether T32 of Example 36.

FIGS. 12A, 12B depict the standard procedure for the synthesis of tether T33a and T33b of Example 37.

FIG. 13 depicts the standard procedure for the synthesis of tether T34 of Example 38.

FIG. 14 depicts the standard procedure for the synthesis of tether T35 of Example 39.

FIG. 15 depicts the standard procedure for the synthesis of tether T36 of Example 40.

FIG. 16 depicts the standard procedure for the synthesis of tether T37 of Example 41.

FIG. 17 depicts the standard procedure for the synthesis of tether T38 of Example 42. Chiral T38 can be accessed through the use of asymmetric synthesis methods, resolution or chiral chromatography techniques available in the literature.

HPLC (standard gradient) t_R=8.46 min
Chiral material can be accessed by starting with the chiral epoxide. For example, the (S)-isomer of T38 was constructed in 89% overall yield from (S)-propylene oxide.

FIG. 18 depicts the standard procedure for the synthesis of tether T39 of Example 43. Chiral T39 can be accessed through the use of asymmetric synthesis methods, resolution or chiral chromatography techniques available in the literature.

FIG. 19 depicts the standard procedure for the synthesis of tether T40 of Example 44. Chiral T40 can be accessed through the use of asymmetric synthesis methods, resolution or chiral chromatography techniques available in the literature.

FIG. 20 depicts the standard procedure for the synthesis of tether T41 of Example 45.

FIG. 21 depicts the standard procedure for the synthesis of tether T42 of Example 46.

FIG. 22 depicts Scheme 2 of the thioester strategy for macrocyclic compounds of the present invention.

FIG. 23 depicts the competitive binding curve for compound 8.

FIG. 24 depicts the competitive binding curve for compound 11

DESCRIPTION OF PREFERRED EMBODIMENTS

Although preferred embodiments of the present invention have been described in detail herein and illustrated in the accompanying structures, schemes and tables, it is to be understood that the invention is not limited to these precise embodiments and that various changes and modifications may be effected therein without departing from the scope or spirit of the present invention.
Specifically preferred compounds of the present invention, include, but are not limited to:
In addition to the preferred tethers (T) illustrated previously, other specific tethers employed for compounds of the invention are shown hereinbelow:
In a preferred embodiment, the present invention is directed to a method of treating irritable bowel syndrome, dyspepsia, Crohn's disease, gastroesophogeal reflux disorders, ulcerative colitis, pancreatitis, infantile hypertrophic pyloric stenosis, carcinoid syndrome, malabsorption syndrome, diarrhea, diabetes mellitus, obesity, postgastroenterectomy syndrome, atrophic colitis or gastritis, gastric stasis, gastrointestinal dumping syndrome, celiac disease and eating disorders leading to obesity in humans and other mammals comprising administering a therapeutically effective amount of a compound of formula (I).

Synthetic Methods

A. General Information

Reagents and solvents were of reagent quality or better and were used as obtained from various commercial suppliers unless otherwise noted, DMF, DCM and THF used are of DriSolv® (EM Science, now EMD Chemicals, Inc., part of Merck KgaA, Darmstadt, Germany) or synthesis grade quality except for (i) deprotection, (ii) resin capping reactions and (iii) washing. NMP used for the amino acid (AA) coupling reactions is of analytical grade. DMF was adequately degassed by placing under vacuum for a minimum of 30 min prior to use. Tyr(3tBu) was synthesized following the method reported in JP2000 44595. Cpa was made using literature methods (Tetrahedron: Asymmetry 2003, 14, 3575−3580) or obtained commercially. Boc- and Fmoc-protected amino acids and side chain protected derivatives, including those of N-methyl and unnatural amino acids, were obtained from commercial suppliers or synthesized through standard methodologies known to those in the art. Ddz-amino acids were either synthesized by standard procedures or obtained commercially from Orpegen (Heidelberg, Germany) or Advanced ChemTech (Louisville, Ky., USA). Bts-amino acids were synthesized as described in Example 6. Hydroxy acids were obtained from commercial suppliers or synthesized from the corresponding amino acids by literature methods. Analytical TLC was performed on pre-coated plates of silica gel 60F254 (0.25 mm thickness) containing a fluorescent indicator. The term “concentrated/evaporated under reduced pressure” indicates evaporation utilizing a rotary evaporator under either water aspirator pressure or the stronger vacuum provided by a mechanical oil vacuum pump as appropriate for the solvent being removed. “Dry pack” indicates chromatography on silica gel that has not been pre-treated with solvent, generally applied on larger scales for purifications where a large difference in R_fexists between the desired product and any impurities. For solid phase chemistry processes, “dried in the standard manner” is that the resin is dried first in air (1 h), and subsequently under vacuum (oil pump usually) until full dryness is attained (˜30 min to O/N).

B. Synthetic Methods for Building Blocks of the Invention

Example 6

Standard Procedure for the Synthesis of Bts-Amino Acids

To a solution of the amino acid or amino acid derivative (0.1 mol, 1.0 eq) in 0.25 N sodium hydroxide (0.08 mol, 0.8 eq) with an initial pH of approximately 9.5 (pH meter) at rt, solid Bts-Cl (0.11 mol, 1.1 eq) was added in one portion. The resulting suspension was stirred vigorously for 2-3 d. The pH of the reaction should be adjusted with 5.0 N sodium hydroxide as required to remain within the range 9.5-10.0 during this time. Typically, the pH has to be adjusted every 20−30 min during the first 5 h. Once the pH stops dropping, it is an indication that the reaction is almost complete. This can be confirmed by TLC (EtOAc:MeOH, 95:5). Upon completion, the reaction mixture was washed with Et₂O. Washing is continued until the absence of non-polar impurities in the aqueous layer is confirmed by TLC (typically 3×100 mL). The aqueous solution was then cooled to 0° C., acidified to pH 2.0 with 1 N HCl until no additional cloudiness forms, and extracted with EtOAc (3×100 mL). Alternatively, a mixture of DCM and EtOAc may be used as the extraction solvent, depending on the solubility of the product obtained from different amino acids or derivatives. Note that DCM cannot be used solely as solvent because of the emulsion formed during extraction. The combined organic phases were washed with brine (2×150 mL), dried over MgSO₄, filtered and evaporated under reduced pressure. DCM (1×) and hexanes (2×) were evaporated from the residue in order to ensure complete removal of the EtOAc and give the desired compound as a solid in 55-98% yield.
The following are modifications that have proven useful for certain amino acids:
Gly, Ala, D-Ala, β-Ala and GABA: Use 1.5 eq of amino acid per eq of Bts-Cl, in order to prevent dibetsylation.
Met: Carry out the reaction under N₂to prevent oxidation.
Gln and Asn: Due to the solubility of Bts-Gln and Bts-Asn, the work-up required is modified from the standard procedure: Upon completion of the reaction, the reaction mixture was washed with diethyl ether. Washing is continued until the absence of non-polar impurities in the aqueous layer is confirmed by TLC (typically 3×100 mL). The aqueous phase was then cooled to 0° C. and acidified to pH 2.0 with 6 N HCl. 6 N HCl was employed to minimize the volume of the solution due to the water solubility of Bts-Gln and Bts-Asn. (They are, in contrast, difficult to dissolve in DCM, EtOAc or chloroform.) The solution was maintained at 0° C. for 10 min and the product was collected by filtration as a white precipitate. The solid was washed with cold water (1×), cold brine (2×) and water (1×, 25° C.). The pH of this wash was taken, if it is not approximately 4, the solid was washed again with water. Finally, the solid was washed with cold EtOAc, then with cold Et₂O (2×), and finally dried under vacuum (oil pump) (83-85% yield).

C. General Synthetic Strategy to Conformationally-Defined Macrocycles of the Present Invention

The compounds of Formula I can be synthesized using traditional solution synthesis techniques or solid phase chemistry methods. In either, the construction involves four phases: first, synthesis of the building blocks, including one to four moieties, comprising recognition elements for the biological target receptor, plus one tether moiety, primarily for control and definition of conformation. These building blocks are assembled together, typically in a sequential fashion, in a second phase employing standard chemical transformations. The precursors from the assembly are then cyclized in the third stage to provide the macrocyclic structures. Finally, a post-cyclization processing stage involving removal of protecting groups and optional purification then provides the desired final compounds (see FIG. 1). This method has been previously disclosed in WO 01/25257 and U.S. patent application Ser. No. 09/679,331. A general synthetic strategy is shown in FIG. 1.

D. Procedures for the Synthesis of Representative Tethers of the Present Invention

The important tether component required for compounds of the invention are synthesized as described in WO01/25257, U.S. Provisional Pat. Appl. Ser. No, 60/491,248 or herein. A standard procedure for the synthesis of tether B is shown in FIG. 2.
Step T8-1: Chlorotrimethylsilane (116 mL, 0.91 mol, 1.5 eq) was added to a suspension of 2-hydroxycinnamic acid (100 g, 0.61 mol, 1.0 eq) in MeOH (500 mL, HPLC grade) over 30 min at 0° C. The resulting mixture was stirred at rt O/N. The reaction was monitored by TLC (EtOAc/MeOH: 98/2). Heating the reaction mixture in a hot water can accelerate the process if necessary. After the reaction was completed, the reaction mixture was evaporated under reduced pressure to afford methyl 2-hydroxycinnamate as a white solid (108.5 g) in quantitative yield. The identity of this intermediate compound is confirmed by NMR. This reaction can be carried out on larger (kg) scale with similar results
Step T8-2: 3,4-Dihydro-2H-pyran (DHP, 140 mL, 1.54 mol, 2.52 eq) was added dropwise to 2-bromoethanol (108 mL, 1.51 mol, 2.5 eq) in a 2 L three-neck flask with mechanical stirring at 0° C. over 2 h. The resulting mixture was stirred for additional 1 h at rt. Methyl 2-hydroxycinnamate from Step T8-1 (108 g, 0.61 mol, 1.0 eq), potassium carbonate (92.2 g, 0.67 mol, 1.1 eq), potassium iodide (20 g, 0.12 mol, 0.2 eq) and DMF (300 mL, spectrometric grade) were added to the above flask. The reaction mixture was stirred at 70° C. (external temperature) for 24 h. The reaction was monitored by TLC (DCM/Et₂O: 95/5). The reaction was allowed to coolto rt and Et₂O (450 mL) was added. The inorganic salts were removed by filtration and washed with Et₂O (3×50 mL). The filtrate was diluted with hexanes (400 mL) and washed with water (3×500 mL), dried over MgSO₄, filtered and the filtrate evaporated under reduced pressure. The crude ester (desired product and excess Br—C₂H₄-OTHP) was used for the subsequent reduction without further purification.
Step T8−3: DIBAL (1.525 L, 1.525 mol, 2.5 eq, 1.0 M in DCM) was added slowly to a solution of the above crude ester from Step T8-2 (0.61 mol based on the theoretical yield) in anhydrous DCM (610 mL) at −35° C. with mechanical stirring over 1.5 h. The resulting mixture was stirred for 1.5 h at −35° C., then 1.5 h at 0° C. The reaction was monitored by TLC (hex/EtOAc: 50/50). When complete, Na₂SO₄·10 H₂O (100 g, 0.5 eq) was slowly added; hydrogen evolution was observed, when it subsided water was added (100 mL). The mixture was warmed to it and stirred for 10 min, then warmed to 40° C. with hot water and stirred under reflux for 20 min. The mixture was cooled to rt, diluted with DCM (600 mL), and the upper solution decanted into a filter. The solid that remained in the flask was washed with dichloromethane (5×500 mL) with mechanical stirring and filtered. The filtrate from each wash was checked by TLC, and additional washes performed if necessary to recover additional product. In an alternative work-up procedure, after dilution with DCM (600 mL), the mixture was filtered. The resulting solid was then continuously extracted with 0.5% TEA in dichloromethane using a Soxhlet extractor. Higher yield was typically obtained by this alternative procedure, although it does require more time. The filtrate was concentrated under reduced pressure and the residue purified by dry pack (EtOAc/hex/Et₃N: 20/80/0.5) to give the product alcohol as a yellowish oil (yield: 90%). The identity and purity were confirmed by NMR.
Step T8-4: To a mixture of the allylic alcohol from Step T8-3 (28 g, 0.100 mol, 1.0 eq) and collidine (0.110 mol, 1.1 eq) in 200 mL of anhydrous DMF under N₂was added anhydrous LiCl (4.26 g, 0.100 mol, 1.0 eq.) dissolved in 100 mL of anhydrous DMF. The mixture was then cooled to 0° C., and MsCI (12.67 g, 0.110 mol, 1.1 eq., freshly distilled over P₂O₅), was added dropwise. The reaction was allowed to warm to rt and monitored by TLC (3:7 EtOAc/hex). When the reaction was complete, NaN₃(32.7 g, 0.500 mol, 5.0 eq.) was added. The reaction mixture was stirred at rt O/N with progress followed by NMR. When the reaction was complete, the mixture is poured into an ice-cooled water bath, and extracted with diethyl ether (3×). The combined organic phases were then washed sequentially with citrate buffer (2×), saturated sodium bicarbonate (2×), and finally with brine(1×). The organic layer was dried with MgSO₄, filtered and the filtrate concentrated under reduced pressure. The allylic azide was obtained in 90% combined yield, and was of sufficient quality to use as such for the following step.
Step T8-5: PPh₃(25.9 g, 0.099 mol, 1.5 eq) was added at 0° C. to a solution of the allylic azide from Step T8-4 (20.0 g, 0.066 mol, 1.0 eq.) in 100 mL of THF. The solution was stirred for 30 min at 0° C. and 20 h at rt. Water (12 mL) was then added and the resulting solution was heated at 60° C. for 4 h. The solution was cooled to rt, 2N HCl (15 mL) added and the mixture stirred for 90 min at 50° C. The separated organic phase was extracted with 0.05 N HCl (2×100 mL). The combined aqueous phase was washed with Et₂O (5×150 mL) and toluene (4×150 mL) (more extraction could be necessary, follow by TLC), which were combined and back-extracted with 0.05 N HCl (1×100 mL). This acidic aqueous phase from back-extraction was combined with the main aqueous phase and washed with ether (5×150 mL) again. The pH of the aqueous phase was then adjusted to 8-9 by the addition of sodium hydroxide (5 N). Care must be exercised to not adjust the pH above 9 due to the reaction conditions required by the next step. The aqueous phase was concentrated under reduced pressure (aspirator, then oil pump) or lyophilized to dryness. Toluene (2×) was added to the residue and then also evaporated under reduced pressure to remove traces of water. The crude product (desired amino alcohol along with inorgnic salt) was used for the next reaction without further purification.
Step T8-6: A mixture of the crude amino alcohol from Step T8-5 (0.5 mol based on the theoretical yield), Ddz-OPh (174 g, 0.55 mol, 1.1 eq) and Et₃N (70 mL, 0.5 mol, 1.0 eq) in DMF (180 mL) was stirred for 24 h at 50° C. Additional DMF is added if required to solubilize all materials. The reaction was monitored by TLC (hex/EtOAc: 50/50, ninhydrin detection). After the reaction was complete, the reaction mixture was diluted with Et₂O (1.5 L) and water (300 mL). The separated aqueous phase was extracted with Et₂O (2×150 mL). The combined organic phase was washed with water (3×500 mL) and brine (1×500 mL), dried over MgSO₄, filtered and the filtrate concentrated under reduced pressure. The layers were monitored by TLC to ensure no product was lost into the aqueous layer. If so indicated, perform one or more additional extractions with Et₂O of the aqueous phase to recover this material. The crude product was purified by dry pack (recommended column conditions: EtOAc/hex/Et₃N: 35/65/0.5 to 65/35/0.5) to give the tether Ddz-T8 as a pale yellow syrup (yield: ˜40%). The identity and purity of the product was confirmed by NMR.
¹H NMR (DMSO-d₆): 1.6 ppm (s, 6H, 2×CH3), 3.6-3.8 ppm (wide s, 10H, 2×OCH₃, 2×OCH₂), 3.95 ppm (triplet, 2H, CH₂N), 6-6.2 ppm (m, 2H, 2×CH), 6.2-6.5 ppm (m, 3H, 3×CH, aromatic), 6.6-7.6 ppm (m, 5H, aromatic).
A standard procedure for the synthesis of tether T9 is shown in FIG. 3.
Tether T9 can also be synthesized from T8 by reduction as in step T9-3 or with other appropriate hydrogenation catalysts known to those in the art.
A standard procedure for the synthesis of Ddz propargylamine is shown in FIG. 4. In a dried three-neck flask, a solution of propargylamine (53.7 g, 0.975 mol, 1.5 eq) in degassed DMF (Drisolv, 388 mL) was treated with Ddz-N₃(170.9 g, 0.65 mol, 1.0 eq), tetramethylguanidine (TMG, 81.4 mL, 0.65 mol, 1.0 eq) and DIPEA (113.1 mL, 0.65 mol, 1.0 eq) and stirred at 50° C. O/N. The reaction was monitored by TLC (conditions:25/75 EtOAc/hex. R_f: 0.25; detection: UV, ninhydrin). Upon completion, DMF was evaporated under reduced pressure until dryness and the residue dissolved in Et₂O (1 L). The organic solution was washed sequentially with citrate buffer (pH 4.5, 3×), saturated aqueous sodium bicarbonate (2×), and brine (2×), then dried with MgSO₄, filtered and the filtrate evaporated under reduced pressure. A pale orange solid was obtained. This solid was triturated with 1% EtOAc in hex, then collected by filtration and dried under vacuum (oil pump) to provide the desired product (153.4 g, 85.2%).
A standard procedure for the synthesis of tether T10 is shown in FIG. 5A. Two alternative routes to this tether have been developed. The first synthetic approach proceeded starting from the commercially available monobenzoate of resorcinol (T10-0). Mitsunobu reaction under standard conditions with the protected amino alcohol from Example 9, followed by saponification of the benzoate provided T10-1 in good yield after recrystallization. Alkylation of the phenol with 2-bromoethanol using the optimized conditions shown permitted the desired product Ddz-T10 to be obtained after dry pack purification in 42% yield.
A second synthetic route to T10 is shown in FIG. 5B.
From resorcinol, two successive Mitsunobu reactions are conducted with the appropriate two carbon synthons illustrated, themselves derived from 2-aminoethanol and ethylene glycol, respectively, through known protection methodologies. Lastly, deprotection of the silyl ether, also under standard conditions provided Boc-T10.
Although the yields in the two methods are comparable, the first required less mechanical manipulation and is preferred for larger scales.
A standard procedure for the synthesis of tether T11 is shown in FIG. 6.
A standard procedure for the synthesis of tether T12 is shown in FIG. 7.
In a 3-L flame-dried three-neck flask, a solution of (aminomethyl)phenylthiobenzyl alcohol (12-0, 96 g, 0.39 mol) in degassed DMF (1 L, 0.4 M) was prepared. To this was added DdzN₃(0.95 eq), followed by TMG (0.39 mol, 49 mL). The reaction was stirred for 10 min, then DIPEA (68 mL, 0.39 mol) added. The mixture was heated at 50° C. under N₂until TLC indicated no DdzN₃remained (48 h typically). (TLC eluent: EtOAc:Hex 50:50; detection: ninhydrin). Upon completion, to the reaction mixture was added 3 L citrate buffer and the separated aqueous layer extracted with Et₂O (3×1500 mL). The combined organic phase was washed sequentially with citrate buffer (2×200 mL), water (2×200 mL) and brine (2×200 mL). The organic layer was dried over MgSO₄, filtered and the filtrate evaporated under reduced pressure. A dark orange oil was obtained, which was purified by dry-pack. For this procedure, the oil was first dissolved in EtOAc:Hex:DCM:TEA (20:80:1:0.5, v/v/v/v). At this point, a little extra DCM was sometimes required to ensure complete dissolution. The solution was loaded onto the column, then the column eluted with EtOAc:Hex:DCM:Et₃N (20:80:1:0.5) until all the impurities were separated out as indicated by TLC, paying particular attention to that closest to the desired product. The elution was then continued with EtOAc:Hex:Et₃N 30:70:0.5 (v/v/v) and finally with EtOAc:hexanes:Et₃N (50:50:0.5) to elute the desired product. After removal of the solvent from the fractions containing the product under reduced pressure, the residue was dissolved in the minimum amount of DCM, a three-fold larger volume of hexanes added, then the solvents again evaporated under reduced pressure. This treatment was repeated until an off-white foam was obtained. The latter solidified while drying under vacuum (oil pump). Alternatively, the material yielded a solid after sequential concentration with DCM (1×) and hexanes (2×). Tether Ddz-T12 was obtained as an off-white solid (85-90% yield).

Example 29

Standard Procedure for Attachment of Tethers Utilizing the Mitsunobu Reaction

Example 29-A

Using PPh₃-DIAD Isolated Adduct

To a 0.2 M solution of the appropriate tether (1.5 eq) in THF or THF-toluene (1:1) was added the PPh₃-DIAD (pre-formed by mixing equivalent amounts of the reagents and isolated by evaporation of solvent, see Example 29-C) adduct (1.0 eq.). The resultant mixture was manually agitated for 10 sec (the solution remained turbid), then added to the resin. Alternatively, the resin was added to the solution. The reaction suspension was agitated O/N (after min the mixture becomes limpid). The resin was filtered and washed 2×DCM, 1× toluene, 1×EtOH, 1× toluene, 1×(DCM/MeOH), 1×(THF/MeOH), 1× (DCM/MeOH), 1× (THF/MeOH), 2×DCM, then dried in the standard manner.

Example 29-B

Using “PPh₃-DIAD In Situ Procedure”

To a 0.2 M solution of the appropriate tether (4 eq) in THF or THF-toluene (1:1) was added triphenylphosphine (4 eq). The resultant mixture was manually shaken until a homogenous solution was obtained, then added to the resin. Alternatively, the resin (or IRORI™ MiniKans® (NEXUS Biosystems, Poway, Calif.), miniaturized microreactors, containing resin) was added to the solution. To this suspension was then added DIAD (3.9 eq) and the reaction agitated O/N. Note: Since the reaction is exothermic, for larger scales, the reaction should be cooled in an ice bath. In addition, an appropriate vent must be supplied to allow any pressure build-up to be released. The resin was filtered and washed DCM (2×), toluene (1×), EtOH (1×), toluene (1×), DCM/MeOH (1×), 1×THF/MeOH (1×), DCM/MeOH (1×), THF/MeOH (1×), 2×DCM, then dried in the standard manner.
A procedure for the synthesis of PPh₃-DIAD adduct is shown in FIG. 8.
DIAD (1 eq) was added dropwise to a well-stirred solution of triphenylphosphine (1 eq) in THF (0.4 M) at 0° C. under nitrogen. The mixture was then maintained at 0° C. with stirring for 30 min. The white solid obtained was collected by filtration (use medium sized fritted filters), washed with cold anhydrous THF until the washes were colorless, and lastly washed once with anhydrous Et₂O. The white solid product was then vacuum-dried (oil pump) and stored under nitrogen. (Note: The PPh₃-DIAD adduct can be made in larger than immediately required quantity and stored under nitrogen; it is very important to store this reagent under anhydrous conditions.)

Example 30

Standard Procedure for Attachment of Tethers via Reductive Amination as shown in FIG. 9

In certain instances, the Mitsunobu process of Example 29 cannot be applied or is not efficient for incorporation of the tether. Hence, reductive amination has been developed as an alternative that can be employed for tether incorporation as illustrated hereinbelow for one of the preferred tethers. Similar chemistry can be used to incorporate other tethers of the present invention.
The Tether (30-2) with the amine protected as its Ddz derivative was efficiently oxidized to the corresponding aldehyde 30-2 using SO₃·pyr in DMSO-Et₃N-DCM. This aldehyde (0.14 mmol, 56 mg, 1.5 eq based upon loading of resin support) was dissolved in a 1:3 mixture of TMOF-MeOH (DriSolv, 4 mL) at rt. To this was added the resin containing the tripeptide (30-1, as its trifluoroacetic acid salt from the deprotection of the terminal amine), the mixture was agitated briefly to wet the resin, and then borane-pyridine complex (as the commercially available 8 M solution, 23 μL , 2 eq) was introduced to the suspension. The reaction was agitated O/N, then the resin filtered, washed with DCM (2×), THF (1×), DCM/MeOH [3:1] (1×), THF/MeOH [3:1](1×), DCM (2×) and dried in the standard manner. Care must be taken to ensure that the desired resin bound product 30-3 is not contaminated with the dialkylated material. However, even if the reaction does not proceed to completion or if a small amount of the dialkylation side product is present, the material is of sufficient purity for the macrocyclizatton reaction.
A standard procedure for the synthesis of tether T28 is shown in FIG. 10.
Henry reaction of 2-hydroxybenzaldehyde 28-0 provided 28-1 in 79% yield. This was followed by reduction first with sodium borohydride, then with catalytic hydrogenation, to give the amine, which was then protected as its Boc derivative, 28-2. Yields of these first two steps were lower on larger scales. Alkylation of 28-2 with the TBDMS ether of 2-bromoethanol, itself synthesized by standard methods, gave 28-3 in 74% yield. Deprotection of the silyl ether under standard conditions yielded the desired protected tether, Boc-T28. Alternative use of ethylene carbonate for the phenol alkylation to avoid the protection/deprotection steps, gave 73% yield.
A standard procedure for the synthesis of tether T32 is shown in FIG. 11.
A standard procedure for the synthesis of tether T33 a and T33 b is shown in FIGS. 12A and 12B.
The construction to the (R)-isomer of this tether (T33a) was accomplished from 2-iodophenol (33-0) and (S)-methyl lactate (33-A). Mitsunobu reaction of 33-0 and 33-A proceeded with inversion of configuration in excellent yield to give 33-1. Reduction of the ester to the corresponding alcohol (33-2) also occurred in high yield and was followed by Sonagashira reaction with Ddz-propargylamine. The alkyne in the resulting coupling product, 33-3, was reduced with catalytic hydrogenation. Workup with scavenger resin provided the desired product, Ddz-T33a.
The synthesis of the (S)-enantiomer (Ddz-T33b) was carried out in an identical manner in comparable yield starting from (R)-methyl lactate (33-B). See FIG. 12B.
Standard procedures for the synthesis of various tethers are shown in the figures: tether T34 (FIG. 13), tether T35 (FIG. 14), tether T36 (FIG. 15), tether T37 (FIG. 16), tether T38 (FIG. 17), tether T39 (FIG. 18), tether T40 (FIG. 19), tether T41 (FIG. 20) and tether T42 (FIG. 21).

E. Examples of Synthetic Strategies for the Macrocyclic Compounds of the Invention

FIG. 22 presents a scheme depicting a thioester strategy for macrocyclic compounds of the present invention.
It should be noted that one or more of the amino acids indicated can be replaced by corresponding hydroxy acids and coupled to the next building block utilizing methods known to those in the art.

Example 47

Standard Procedure for Macrocyclization with Thioester Linker

The resin containing the cyclization precursor is combined in an appropriate vessel with pre-washed MP-carbonate resin [Argonaut Technologies, Foster City, Calif., commercially supplied MP-carbonate resin was treated with 3×THF (1 L per 400 g) and dried O/N at 30° C. in a vacuum oven] (1.4 to 1.6 eq relative to the initial loading of the synthesis resin). A 0.2 M DIPEA solution in THF was then added to the combined resins (1 mL/60 mg MP-carbonate resin) and the suspension agitated O/N at rt. Subsequently, the resin was filtered and rinsed 2×THF. The combined filtrates are collected together in an appropriate vessel, then the volatile contents evaporated under reduced pressure [in addition to the standard methods, solvent can also be removed in vacuo using centrifugal evaporation (ThermoSavant Discovery®, SpeedVac® or comparable) (Thermo Electron Corporation, Waltham, Mass.)] to provide the crude macrocycles.

Example 48

Standard Procedure for Silver-Assisted Macrocyclization with Thioester Linker

Except for the cyclization itself and subsequent work-up, this procedure is identical to that of Example 47. The resin containing the cyclization precursor was combined in an appropriate vessel with pre-washed MP-carbonate resin [Argonaut Technologies, commercially supplied MP-carbonate resin was treated with THF (3×, 1 L per 400 g) and dried O/N at 30° C. in a vacuum oven] (1.4 to 1.6 eq relative to the initial loading of the synthesis resin). To this was added THF (1 mL per 100 mg resin) and silver trifluoroacetate (1 eq relative to the initial loading of the resin). Finally, an amount of DIPEA sufficient to obtain a 0.2 M solution was added. The reaction mixture was agitated at rt O/N. The solution was then filtered and the resins washed 2×THF. The filtrates are collected together in an appropriate vessel, then evaporated under reduced pressure [(the volatile contents could also be removed in vacuo using centrifugal evaporation (ThermoSavant Discovery®, SpeedVac® or comparable)] to provide the crude macrocycles. For this procedure, silver trifluoroacetate should be stored in a dessicator between uses. In addition, it is recommended to use a new bottle of THF (or a bottle that has been recently opened under N₂or Ar) to minimize formation of silver oxide.
Additionally, a ring-closing metathesis (RCM) strategy, as developed by Grubbs et al. can also be used to access some of the macrocyclic compounds of the invention (see for example US 5,811,515; Grubbs, R. H. et al. J. Org. Chem. 2001, 66, 5291-5300; Fürstner, A. Angew. Chem. Int. Ed. 2000, 39, 3012−3043).
To access certain derivatives of compounds of the present invention, additional reactions from those in the general scheme were required. For some, it was advantageous to react the functionality to be derivatized prior to the formation of the macrocyclic ring. The cyclic structure can restrict access of reagents to that functionality. For example, in the synthesis of N-methyl and N-acyl derivatives of macrocycles, where the secondary nitrogen atom of the ring is the site of derivatization, the reaction is preferred to be performed prior to the application of the appropriate cyclization protocol.
In other cases, for example the derivatization of side chain functionality, the reaction was best performed after formation of the macrocyclic ring. For example, further reaction of amino moieties on side chains examples was typically efficiently done by reaction of the partially protected macrocycle. In this manner, acylation, sulfonylation, alkylation (via reductive amination), guanidine and urea formation were performed via standard methods.
Table 1, hereinbelow, shows a representative, but by no means exclusive, summary of the chemical synthesis of several representative compounds of the invention.

TABLE 1

Synthesis of Representative Compounds of the Present Invention

				Tether	Additional
AA1	AA2	AA3	Tether	Attachment	Steps

1	Bts-D-	Boc-D-Val	Boc-Nva	Ddz-T8	Example 29	none
	Tyr(tBu)
2	Bts-D-Phe	Boc-D-Val	Boc-Nva	Boc-T8	Example 29	none
3	Bts-D-Phe	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
4	Bts-D-	Boc-D-Val	Boc-Nva	Ddz-T9	Example 29	none
	Tyr(tBu)
5	Bts-D-	Boc-D-Ala	Boc-Nva	Ddz-T8	Example 29	none
	Tyr(tBu)
6	Bts-D-	Boc-D-Val	Boc-Met	Ddz-T8	Example 29	none
	Tyr(tBu)
7	Bts-D-	Boc-D-Val	Boc-Nle	Ddz-T8	Example 29	none
	Tyr(tBu)
8	Bts-D-	Boc-D-Val	Boc-Phe	Ddz-T8	Example 29	none
	Tyr(tBu)
9	Bts-D-	Boc-D-Val	Boc-Val	Ddz-T8	Example 29	none
	Tyr(tBu)
10	Bts-D-	Boc-D-Val	Boc-Leu	Ddz-T9	Example29	none
	Tyr(tBu)
11	Bts-D-2-Nal	Boc-D-Val	Boc-Nva	Boc-T8	Example 29	none
12	Bts-D-	Boc-D-Val	Boc-Abu	Ddz-T8	Example 29	none
	Tyr(tBu)
13	Bts-D-Phe	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	none
14	Bts-D-2-Nal	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	none
15	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(3Cl)
16	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(4Cl)
17	Bts-D-	Boc-D-Val	Boc-Nva	Ddz-T9	Example 29	none
	Trp(Boc)
18	Bts-D-	Boc-D-2-Abu	Boc-Nva	Ddz-T9	Example 29	none
	Tyr(tBu)
19	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(4F)
20	Bts-D-Phe	Boc-D-Val	Boc-Leu	Boc-T8	Example 29	none
21	Bts-D-2-Nal	Boc-D-Val	Boc-Leu	Boc-T8	Example 29	none
22	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Tyr(OMe)
23	Bts-D-1-Nal	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
24	Bts-D-2-Thi	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
25	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(2Cl)
26	Bts-D-	Boc-D-Val	Boc-Cpa	Ddz-T9	Example 29	none
	Tyr(tBu)
27	Bts-D-4-Thz	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
28	Bts-D-3-Pal	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
29	Bts-D-	Boc-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	none
	Tyr(tBu)
30	Bts-D-	Hnva(THP)	Boc-Nva	Ddz-T9	Example 29	none
	Tyr(tBu)
34	Bts-D-	Ddz-D-Tyr(tBu)	Boc-Nva	Ddz-T8	Example 29	None
	Tyr(tBu)
38	Bts-D-	Boc-D-Val	Boc-Ala	Ddz-T8	Example 29	none
	Tyr(tBu)
39	Bts-D-	Boc-D-Val	Boc-□-Ala	Ddz-T8	Example 29	none
	Tyr(tBu)
40	Bts-D-	Boc-D-Val	Boc-Gly	Ddz-T8	Example 29	none
	Tyr(tBu)
41	Bts-D-	Boc-DPhe	Boc-Nva	Ddz-T8	Example 29	none
	Tyr(tBu)
52	Bts-D-	Boc-D-Val	Boc-Phg	Ddz-T8	Example 29	none
	Tyr(tBu)
55	Bts-D-	Ddz-D-Val	Ddz-Lys(Boc)	Ddz-T8	Example 29	none
	Tyr(tBu)
56	Bts-D-	Ddz-D-Val	Ddz-Orn(Boc)	Ddz-T8	Example 29	none
	Tyr(tBu)
57	Bts-D-	Ddz-D-Val	Ddz-Ser(tBu)	Ddz-T8	Example 29	none
	Tyr(tBu)
58	Bts-D-	Ddz-D-Val	Ddz-Tyr(tBu)	Ddz-T8	Example 29	none
	Tyr(tBu)
59	Bts-D-	Ddz--D-Val	Ddz-Trp(Boc)	Ddz-T8	Example 29	none
	Tyr(tBu)
60	Bts-D-	Boc-D-Val	Boc-Tyr(OMe)	Ddz-T8	Example 29	none
	Tyr(tBu)
65	Bts-D-	Boc-D-Val	Boc-Nva	Ddz-T2	Example 29	none
	Tyr(tBu)
71	Bts-D-	Boc-D-Val	Boc-Nva	Ddz-T10	Example 29	none
	Tyr(tBu)
72	Bts-D-	Boc-D-Val	Boc-2-Nal	Ddz-T8	Example 29	none
	Tyr(tBu)
76	Bts-D-	Boc-D-2-Nal	Boc-Nva	Ddz-T8	Example 29	none
	Tyr(tBu)
77	Bts-D-	Boc-D-Nle	Boc-Nva	Ddz-T8	Example 29	none
	Tyr(tBu)
80	Bts-D-	Boc-D-Val	Boc-Ile	Ddz-T8	Example 29	none
	Tyr(tBu)
85	Bts-D-	Boc-D-Val	Boc-D-Nva	Ddz-T8	Example 29	none
	Tyr(tBu)
87	Bts-D-Bip	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
88	Bts-D-	Boc-D-Val	Boc-Nva	Ddz-T9	Example 29	none
	Tyr(tBu)
89	Bts-D-Hfe	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
90	Bts-D-Dip	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
91	Bts-D-	Boc-D-Nva	Boc-Nva	Ddz-T9	Example 29	none
	Tyr(tBu)
92	Bts-D-	Boc-D-Tle	Boc-Nva	Ddz-T9	Example 29	none
	Tyr(tBu)
96	Bts-D-	Boc-β-Ala	Boc-Nva	Ddz-T9	Example 29	none
	Tyr(tBu)
97	Bts-D-	Boc-D-Chg	Boc-Nva	Ddz-T9	Example 29	none
	Tyr(tBu)
98	Bts-D-	Boc-D-Val	Boc-Nva	Ddz-T18	Example 29	none
	Tyr(tBu)
99	Bts-D-	Boc-D-Val	Boc-Nva	Ddz-T15	Example 29	none
	Tyr(tBu)
109	Bts-D-	Boc-D-Val	Ddz-Dab(Boc)	Ddz-T9	Example 29	none
	Tyr(tBu)
110	Bts-D-	Boc-D-Val	Boc-Nva	Ddz-T11	Example 29	none
	Tyr(tBu)
111	Bts-D-	Boc-D-Val	Hval(THP)	Ddz-T9	Example 29	none
	Tyr(tBu)
112	Bts-D-	Boc-D-Val	Boc-Nva	Ddz-T9	Example 29	none
	Tyr(tBu)
120	Bts-D-	Boc-D-Pro	Boc-Nva	Ddz-T8	Example 29	none
	Tyr(tBu)
121	Bts-D-	Boc-D-Val	Boc-Nva	Ac-T8-NH2	Example 29	none
	Tyr(tBu)
122	Boc-D-3-Pal	Boc-D-Val	Boc-Nva	Boc-T9	Example 30	none
123	Boc-D-2-Pal	Boc-D-Val	Boc-Nva	Boc-T9	Example 30	none
124	Boc-D-4-Pal	Boc-D-Val	Boc-Nva	Boc-T9	Example 30	none
125	Bts-D-	Boc-D-Cpg	Boc-Nva	Boc-T9	Example 29	none
	Tyr(tBu)
126	Bts-D-	Boc-D-Val	Boc-NMeLeu	Boc-T9	Example 29	none
	Tyr(tBu)
127	Boc-D-	Boc-D-Val	Boc-Nva	Boc-T12	Example 30	none
	His(Mts)
128	Bts-D-	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	none
	Tyr(OMe)
129	Bts-D-1-Nal	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	none
130	Bts-D-2-Thi	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	none
131	Bts-D-	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	none
	Phe(3Cl)
132	Bts-D-	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	none
	Phe(4Cl)
133	Bts-D-	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	none
	Phe(4F)
134	Bts-D-	Boc-D-Val	Boc-Leu	Boc-T2	Example 29	none
	Phe(3Cl)
135	Bts-D-	Boc-D-Val	Boc-Leu	Boc-T11	Example 29	none
	Tyr(OMe)
136	Bts-D-1Nal	Boc-D-Val	Boc-Leu	Boc-T11	Example 29	none
137	Bts-D-2-Thi	Boc-D-Val	Boc-Leu	Boc-T11	Example 29	none
138	Bts-D-	Boc-D-Val	Boc-Leu	Boc-T11	Example 29	none
	Phe(3Cl)
139	Bts-D-	Boc-D-Val	Boc-Leu	Boc-T11	Example 29	none
	Phe(4Cl)
140	Bts-D-	Boc-D-Val	Boc-Leu	Boc-T11	Example 29	none
	Phe(4F)
141	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T9	Example 29	none
	Tyr(OMe)
142	Bts-D-1-Nal	Boc-D-Val	Boc-Cpa	Boc-T9	Example 29	none
143	Bts-D-2-Thi	Boc-D-Val	Boc-Cpa	Boc-T9	Example 29	none
144	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T9	Example 29	none
	Phe(3Cl)
145	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T9	Example 29	none
	Phe(4Cl)
146	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T9	Example 29	none
	Phe(4F)
147	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T11	Example 29	none
	Tyr(OMe)
148	Bts-D-1-Nal	Boc-D-Val	Boc-Cpa	Boc-T11	Example 29	none
149	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T11	Example 29	none
	Phe(3Cl)
150	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T11	Example 29	none
	Phe(4Cl)
151	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T11	Example 29	none
	Phe(4F)
152	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	none
	Tyr(OMe)
153	Bts-D-1-Nal	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	none
154	Bts-D-2-Thi	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	none
155	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	none
	Phe(3Cl)
156	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	none
	Phe(4Cl)
157	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	none
	Phe(4F)
158	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T11	Example 29	none
	Phe(3Cl)
159	Bts-D-	Boc-D-Ile	Boc-Nva	Boc-T9	Example 29	none
	Tyr(But)
160	Bts-D-	Boc-D-allolle	Boc-Nva	Boc-T9	Example 29	none
	Tyr(But)
161	Boc-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 30	none
	Phe(4CH2NHFmoc)
162	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(2Me)
163	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(3Me)
164	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(4Me)
165	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(3OMe)
166	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(2OMe)
167	Bts-D-3-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	benzothienyl
168	Bts-D-3-Thi	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
169	Bts-D-□-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	HomoPhe(3Cl)
170	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(3,4diCl)
171	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(3,4diF)
172	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(3,4diOMe)
173	Bts-D-1Nal	Hnva(THP)	Boc-Nva	Boc-T9	Example 29	none
174	Bts-D-	Hnva(THP)	Boc-Nva	Boc-T9	Example 29	none
	Tyr(OMe)
175	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T33b	Example 29	none
	Tyr(tBu)
176	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T33a	Example 29	none
	Tyr(tBu)
177	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T28	Example 29	none
	Tyr(tBu)
178	Bts-D-	Ddz-D-Val	Ddz-Ser(tBu)	Ddz-T9	Example 29	none
	Tyr(OMe)
179	Bts-D-1-Nal	Ddz-D-Val	Ddz-Ser(tBu)	Ddz-T9	Example 29	none
180	Bts-D-2-Thi	Ddz-D-Val	Ddz-Ser(tBu)	Ddz-T9	Example 29	none
181	Bts-D-	Ddz-D-Val	Ddz-Ser(tBu)	Ddz-T9	Example 29	none
	Phe(3Cl)
182	Bts-D-	Ddz-D-Val	Ddz-Ser(tBu)	Ddz-T9	Example 29	none
	Phe(4Cl)
183	Bts-D-	Ddz-D-Val	Ddz-Ser(tBu)	Ddz-T9	Example 29	none
	Phe(4F)
184	Bts-D-1-Nal	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T11	Example 29	none
185	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T11	Example 29	none
	Phe(4Cl)
186	Ddz-D-	Ddz-D-Val	Ddz-His(Mts)	Ddz-T9	Example 30	none
	Tyr(tBu)
187	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(3CF3)
188	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(3F)
189	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Phe(4NO2)
190	Bts-D-3-	Boc-D-Val	Boc-Cpa	Boc-T9	Example 29	none
	benzothienyl
191	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T9	Example 29	none
	Phe(3OMe)
192	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T9	Example 29	none
	Phe(3,4diCl)
193	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T9	Example 29	none
	Phe(3,4diF)
194	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T34	Example 29	none
	Tyr(OMe)
195	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T38	Example 29	none
	Tyr(OMe)
196	Bts-D-	Boc-D-Val	Boc-Cpa	Ddz-T32(Boc)	Example 29	none
	Phe(3Cl)
197	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T34	Example 29	none
	Phe(3Cl)
198	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T38	Example 29	none
	Phe(3Cl)
199	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T41	Example 29	none
	Phe(3Cl)
200	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T8	Example 29	none
	Phe(3Cl)
201	Bts-D-1-Nal	Boc-D-Val	Boc-Nva	Boc-T8	Example 29	none
202	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T8	Example 29	none
	Phe(3OMe)
203	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	acetylation
	Phe(4Cl)
204	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	guanidinylation
	Phe(4Cl)
205	Bts-D-	Boc-D-Val	Boc-NMeLeu	Boc-T9	Example 29	none
	Phe(3Cl)
206	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	mesylation
	Phe(4Cl)
207	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	TMS-
	Phe(4Cl)					isocyanate
						followed by
						dilute acid
208	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	guanidinylation
	Tyr(tBu)
209	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	acetylation
	Tyr(tBu)
210	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	reductive
	Tyr(tBu)					amination with
						acetone
211	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	reductive
	Phe(4Cl)					amination with
						excess
						formaldehyde
212	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	reductive
	Phe(4Cl)					amination with
						acetone
213	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Tyr(3,5dil)
214	Bts-D-	Boc-D-Val	Boc-Hse(Bzl)	Boc-T9	Example 29	hydrogenolysis
	Tyr(OMe)					for protecting
						group removal
215	Bts-D-	Ddz-D-Val	Ddz-Dap(Boc)	Ddz-T9	Example 29	reductive
	Tyr(tBu)					amination with
						excess
						formaldehyde
216	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T40	Example 29	none
	Phe(3Cl)
217	Bts-D-	Boc-D-Val	Boc-Cpa	Boc-T36	Example 29	none
	Phe(3Cl)
218	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T39	Example 29	none
	Phe(3Cl)
219	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T37	Example 29	none
	Phe(3Cl)
220	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T39	Example 29	none
	Phe(3Cl)
221	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T35	Example 29	none
	Phe(3Cl)
222	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	none
	Tyr(3tBu)
223	Bts-D-	Boc-D-Val	Boc-Nva	Boc-T9	Example 29	acetylation
	Tyr(But)
224	Bts-D-1-Nal	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	reductive
						amination with
						formaldehyde
225	Bts-D-1-Nal	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	acetylation
226	Bts-D-1-Nal	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	reductive
						amination with
						aldehyde
227	Bts-D-1-Nal	Boc-D-Val	Boc-Leu	Boc-T9	Example 29	reductive
						amination with
						benzaldehyde

Notes
Any amino acid or tether designated as the Boc derivative could be substituted with the corresponding Ddz derivative.

D. Analytical Data for Selected Compounds of the Invention

¹H and ¹³C NMR spectra were recorded on a Varian Mercury 300 MHz spectrometer (Varian, Inc., Palo Alto, Calif.) and are referenced internally with respect to the residual proton signals of the solvent. Information about the conformation of the molecules in solution can be determined utilizing appropriate two-dimensional NMR techniques known to those skilled in the art. HPLC purifications were run on a Waters Xterra® MS C18 column, using the Waters FractionLynx® system (Waters Corporation, Milford, Mass.). Automated medium pressure chromatographic purifications were performed on an Isco CombiFlash® 16× system with disposable silica or C18 cartridges that permitted up to sixteen (1.6) samples to be run simultaneously (Teledyne Isco, Inc., Lincoln, Nebr.). MS spectra were recorded on a Waters Micromass® Platform II or ZQ™ system. HRMS spectra were recorded with a VG Micromass ZAB-ZF spectrometer. Chemical and biological information were stored and analyzed utilizing the ActivityBase® database software (ID Business Solutions Ltd., Guildford, Surrey, UK).

General Methods for Analytical HPLC Analyses

HPLC analyses are performed on a Waters Alliance® system 2695 running at 1 mL/min using an Xterra MS C18 column 4.6×50 mm (3.5 μm). A Waters 996 PDA provided UV data for purity assessment (Waters Corporation, Milford, Mass.). An LCPackings (Dionex Corporation, Sunnyvale, Calif.) splitter (50:40:10) allowed the flow to be separated in three parts. The first part (50%) went to a Micromass® Platform II MS equipped with an APCI probe for identity confirmation. The second part (40%) went to an evaporative light scattering detector (ELSD, Polymer Laboratories, now part of Varian, Inc., Palo Alto, Calif., PL-ELS-1000™) for purity assessment and the last portion (10%) to a chemiluminescence nitrogen detector (CLND, Antek® Model 8060, Antek Instruments, Houston, Tex., part of Roper Industries, Inc., Duluth, Ga.) for quantitation and purity assessment. Data was captured and processed utilizing the most recent version of the Waters Millenium® software package (Milford, Mass.).
An example LC method suitable for compounds of the present invention uses MeOH as solvent A, H₂O as solvent B and 1% TFA/H₂O as solvent D. Initial mobile-phase composition is 5% A, 85% B and 10% D. Details of the standard gradient method are shown below:


Time	A %	B %	D %	Curve

0.00	5	85	10	6
1.00	5	85	10	6
6.00	50	40	10	6
9.00	50	40	10	6
14.00	90	0	10	6
17.00	90	0	10	6
17.50	5	85	10	6
20.00	5	85	10	6

Compounds 2-6, 8-10, 56, 65 and 144 are as defined in Table (3), hereinbelow.

Compound 2

Yield: 12 mg pure macrocycle was obtained (CLND quantification).
¹H NMR (300 MHz, DMSO-d₆) δ 8.83 (m,1H); 8.53 (m, 1H); 7.63 (m, 1H); 7.4-7.08 (m, 7H); 7.00-6.84 (m, 2H); 6.60 (d, 15 Hz, 1H); 6.41 (dt, 15 Hz, 5.4 Hz, 1H); 4,35 (m, 1H); 4.25-4.05 (m, 3H); 3.94 (dt, 1H, 6 Hz, 15 Hz); 3.79 (dd, 1H, 3.6 Hz, 8.4 Hz); 3.60 (m, 1H); 3.52−3.40 (bd, 1H); 3.22-3.06 (m, 4H); 1.88 (m, 2H); 1.54-1.28 (m, 2H); 1.25 (d, 3H, 4.8 Hz); 1.22 (d, 3H, 2.7 Hz); 0.92-0.80 (m, 6 H).
HRMS calc. for C₃₀H₄₀N₄O₄: 520.3049; found 520.3057±0.0016
HPLC [standard gradient method (refers to that presented in General Methods for Analytical HPLC Analyses)] t_R=9.55 min.

Compound 4

Yield: 12 mg pure macrocycle was obtained (CLND quantification).
¹H NMR (300 MHz, DMSO-d₆) δ 9.35 (b, 1H); 8.98 (b, 1H); 5.52 (d, 1H, 8.4 Hz); 8.38 (b, 1H); 7.25 (b, 1H); 7.13-7.07 (m, 4H); 6.86 (t, 2H, 7.5 Hz); 6.57 (d, 2H, 8.7 Hz); 4.33 (b, 1H); 4.21-4.02 (m, 3H); 3.78 (dd, 1H, 3.3 Hz; 8.1 Hz); 3.65−3.54 (m, 1H); 3.31−3.23 (m, 1H); 3.13−3.02 (m, 4H); 2.78-2.2.28-2.18 (m, 1H); 2.0-1.80 (m, 2H); 1.50-1.30 (m, 3H); 1.25 (d, 3H, 4.5 Hz); 1.22 (d, 3H, 4.5 Hz); 1.01 (d, 3H, 6.6 Hz); 0.90 (d, 3H, 6.6 Hz); (t, 3H, 7.5 Hz).
¹³C NMR (75.5 MHz, DMSO-d₆) δ 172.22; 171.37; 157.77; 157.44; 156.04; 131.76; 130.80; 130.70; 127.88; 121.82; 115.83; 111.71; 62.13; 60.62; 54.21; 52.81; 47.13; 42.47; 33.31; 29.69; 29.30; 28.61; 20.36; 19.44; 18.72; 17.60; 13.97.
HRMS calc. for C₃₀H₄₂N₄O₅:538.3155; found: 538.3145±0.0016
HPLC (standard gradient) t_R=8.12 min.

Compound 5

Yield: 17 mg pure macrocycle was obtained (CLND quantification). ¹H NMR (300 MHz, DMSO-d₆) δ 9.02 (b, 1H); 8.47 (d, 1H, 8.4 Hz); 7.7 (b, 1H); 7.58 (d, 1H, 5.4 Hz); 7.28 (dd, 1H, 7.8 Hz, 0.8 Hz); 7.20 (t, 1H, 9.0 Hz, 0.8 Hz); 7.14 (d, 2H, 8.4 Hz); 6.98-6.91 (m, 3H); 6.66 (d, 8.7 Hz); 6.63 (d, 1H, 15.0 Hz); 6.43 (dt, 1H, 6.0 Hz, 15.0 Hz); 4.28-3.86 (m, 6H); 3.60-3.40 (m, 2H); 3.22-3.12 (m, 1 H0; 3.05 (d, 2H, 5.4 Hz); 1.92-1.80 (m, 1H); 1.56-1.40 (m, 1H); 1.36-1.20 (m, 2H); 1.25 (d, 3H, 6.6 Hz); 0.84 (t, 3H, 7.2Hz).
¹³C NMR (75.5 MHz, DMSO-d₆) δ 172.54; 171.86; 158.97; 158.56; 127.39; 155.84; 131.62; 129.73; 129.20; 129.02; 128.43; 126.30; 124.51; 122.01; 115.85; 112.88; 61.23; 52.90; 51.23; 47.08; 42.66; 36.13; 33.30; 21.14; 19.57; 17.07; 14.14; 11.49.
HRMS calc. for C₂₈H₃₆N₄O₅:508.2685; found: 508.2681±0.0015
HPLC (standard gradient) t_R=7.67 min.

Compound 6

Yield: 16 mg pure macrocycle was obtained (CLND quantification).
1H NMR (300 MHz, DMSO-d₆) δ 9.37 (b, 1H); 8.87 (b, 1H); 8.61 (d, 1H, 8.7 Hz); 7.62 (b, 1H); 7.27 (d, 1H, 7.8 Hz); 7.21 (t, 1H, 8.4 Hz); 7.14 (d, 2H, 8.4 Hz); 6.98-6.87 (m, 3H); 6.64 (d, 2H, 8.1 Hz); 6.70 (d, 1H, 15.6 Hz); 6.39 (dt, 1H, 6.3 Hz, 15.6 Hz); 4.44-4.36 (m, 1H); 4.34-4.08 (m, 2Hz); 4.45-3.92 (dt, 1H, 6.9 Hz, 15.6 Hz); 3.74 (dd, 1H, 3.6 Hz, 8.4 Hz); 3.54-3.26 (m, 3H); 3.22-3.02 (m, 3H); 2.60-2.36 (m, 4H); 2.24-2.14 (m, 1H); 2.02 (s, 3H); 1.96-1.89 (m, 1H); 1.80-1.66 (m, 1H); 1.01 (d, 3H, 6.3 Hz); 0.90 (d, 3H, 6.6 Hz).
¹³0 NMR (75.5 MHz, DMSO-d₆) δ 171.51; 171.26; 158.90; 158.49; 157.38; 155.86; 131.63; 129.82; 129.21; 128.86; 128.63; 126.21; 121.98; 115.83; 112.83; 62.11; 61.06; 51.97; 47.10; 42.78; 30.91; 30.67; 29.34; 20.37; 19.39; 15.06.
HRMS calc. for C₃₀H₄₀N₄O₅S: 568.2719; found: 568.2711±0.0017
HPLC R_t(general method) 7.92 min.

Compound 8

Yield: 27 mg pure macrocycle was obtained (CLND quantification).
¹H NMR (300 MHz, DMSO-d₆) δ 9.05 (b, 1H); 8.43 (b, 1H); 8.34 (d, 1H, 9.3 Hz); 7.40 (b, 1H); 6.97 (d, 1H, 7.5 Hz); 6.92-6.74 (m, 9H); 6.67-6.54 (m, 2H); 6.33-6.25 (m, 3H); 6.10 (dt, 1H, 5.7 Hz, 16.2Hz); 4.22 (dt, 1H, 0.9 Hz, 12Hz); 3.94-6.66 (m, 4H); 3.30 (dd, 1H, 3.6 Hz, 7.8 Hz); 3.24 (m, 1H); 3.18 (m, 1H); 2.85-2.68 (m, 3H); 2.44-2.23 (m, 2H); 1.32 (o, 1H, 7.5 Hz); 0.97-0.89 (m, 1H); 0.42 (d, 3H, 6.6 Hz); 0.01 (d, 3H, 6.6 Hz).
¹³C NMR (75.5 MHz, DMSO-d₆) δ 171.20; 157.35; 155.88; 139.12; 131.61; 130.87; 129.74; 129.21; 128.77; 128.88; 126.85; 126.19; 121.97; 115.82; 112.84; 62.04; 61.10; 55.07; 50.01; 47.09; 42.85; 37.42; 29.11.
HRMS calc. For C₃₄H₄₂N₄O₅: 586.3155; found: 586.3145±0.0017
HPLC R_t(general method) 9.34 min.

Compound 9

Yield: 17 mg pure macrocycle was obtained (CLND quantification).
¹H NMR (300 MHz, DMSO-d₆) δ 9.39 (b, 1H); 8.83 (b, 1H); 8.29 (d, 1H, 9.3 Hz); 7.62 (b, 1H); 7.28 (d, 1H, 6.6 Hz); 7.20 (t, 1H, 6.9 Hz); 7.12 (d, 2H, 7.8 Hz); 6.98-6.91 (m, 2H); 6.63 (d, 2H, 8.4 Hz); 6.58 (d, 1H, 16.2Hz); 6.40 (dt, 1H, 5.7 Hz, 16.2Hz); 4.29-4.13 (m, 3H); 4.03−3.92 (m, 2H); 3.52 (m, 1H); 3.15−3.05 (m, 3H); 2.45-2.37 (m, 1H); 1.96-1.88 (m, 1H); 1.25 (dd, 2H, 4.5 Hz; 6 Hz); 1.01 (d, 3H, 6.3 Hz); 0.91 (d, 3H, 6.6 Hz); 0.86 (d, 3H, 7.2Hz); 0.81 (d, 3H, 6.6 Hz).
¹³C NMR (75.5 MHz, DMSO-d₆) δ 171.85; 171.17; 157.37; 155.87; 131.59; 129.88; 129.18; 128.97; 128.78; 128.51; 126.16; 121.97; 115.83; 112.85; 61.55; 61.18; 58.15; 54.22; 47.08; 42.89; 36.32; 29.35; 29.00; 20.34; 19.56; 18.73; 17.44.
HRMS calc. for C₃₀H₄₀N₄O₅: 536.2998; found: 536.2990±0.0017.
HPLC (standard gradient) t_R=8.15 min.

Compound 10

Yield: 24 mg pure macrocycle was obtained (CLND quantification).
¹H NMR (300 MHz, DMSO-d₆) δ 9.33 (b, 1H); 8.82 (b, 1H); 8.56 (d, 1H, 8.3 Hz); 7.60 (b, 1H); 7.27 (d, 2H, 7.8 Hz); 7.20 (t, 1H, 7.8 Hz); 7.13 (d, 2H, 8.4 Hz); 6.95 (t, 2H, 7.8 Hz); 6.64 (d, 2H, 8.4 Hz); 6.57 (d, 1H, 15.4 Hz); 6.38 (dt, 1H, 15.4 Hz, 5.8 Hz); 4.26-4.10 (m, 3H); 3.96 (dt, 1H, 5.4 Hz, 8.4 Hz); 3.77 (dd, 1H, 3.7 Hz, 7.8 Hz); 3.51−3.24 (m, 3H); 3.18-3.02 (m, 3H); 1.90 (h, 1H, 6.4 Hz); 1.73-1.54 (m, 2H); 1.45 (dt, 1H, 6.7 Hz, 0.9 Hz); 0.99 (d, 3H, 6.6 Hz); 0.89 (d, 3H, 6.3 Hz); 0.87 (d, 3H, 6.0 Hz); 0.80 (d, 3H, 6.3 Hz).
¹³C NMR (75.5 MHz, DMSO-d₆) δ 172.23; 171.17; 157.37; 155.88; 131.62; 129.82; 129.19; 128.95; 128.59; 126.24; 121.99; 115.84; 112.88; 64.23; 61.98; 61.14; 51.43; 61.14; 51.43; 47.07; 42.81; 29.38; 24.85; 24.11; 21.00; 20.32; 19.30.
HRMS calc. for C₃₁H₄₂N₄O₅550.3155; found: 550.3150±0.0016.
HPLC (standard gradient) t_R=8.91 min.

Compound 56

Yield: 16 mg pure macrocycle was obtained (CLND quantification).
¹H NMR (300 MHz, DMSO-d₆) δ 9.39 (b, 1H); 8.90 (b, 1H); 8.67 (d, 1H, 8.4 Hz); 7.74 (b, 4H); 7.29-7.08 (m, 4H); 6.99-6.87 (m, 2H); 6.64 (d, 2H, 8.1 Hz); 6.61 (d, 1H, 16.5 Hz); 6.40 (dt, 1H, 5.7 Hz, 16.5 Hz); 4.40-4.06 (m, 4H); 4.02-3.95 (m, 1H); 3.79 (dd, 1H, 3.6 Hz, 7.8 Hz); 3.55-3.30 (m, 2H); 3.16−3.05 (m, 3H); 2.82-2.69 (m, 2H); 2.02-1.85 (m, 2H); 1.64-1.43 (m, 3H); 1.29-1.23 (m, 1H); 1.01 (d, 3H, 6.3 Hz); 0.91 (d, 3H, 6.3 Hz); 0.86-0.84 (m, 2H).
HPLC (standard gradient) t_R=5.71 min.
Compound 65
Yield: 17 mg pure macrocycle was obtained (CLND quantification). ¹H NMR (300 MHz, DMSO-d₆) δ 9.60 (b, 1H); 9.39 (b, 1H); 8.88 (b, 1H); 8.70 (d, 1H, 7.5 Hz); 8.57 (d, 1H, 4.2Hz); 7.27 (t, 6 Hz); 6,96 (d, 2H, 8.4 Hz); 6.66 (d, 2H, 8.4 Hz); 5.78-5.68 (m, 1H); 5.42-5.33 (m, 1H); 3.96−3.89 (m, 1H); 3.80−3.57 (m, 5H); 3.41−3.34 (m, 1H); 3.10-2.90 (m, 1H); 2.78-2.66 (m, 1H); 2.21-2.10 (m, 1H); 2.06-1.93 (m, 1H); 1.70-1.60 (m, 1H); 1.52-1.41 (m, 1H); 1.39-1.26 (m, 1H); 1.25 (d, 3H, 4.8 Hz); 1.23 (d, 3H, 4.5 Hz); 0.83 (dd, 3H, 3 Hz, 4.5 Hz).
¹³C NMR (75.5 MHz, DMSO-d₆) δ 172.68; 172.63; 159.15; 158.73; 157.38; 157.25; 130.89; 124.99; 116.03; 62.51; 62.12; 54.29; 49.27; 42.47; 32.77; 30.43; 28.85; 20.46; 19.59; 18.72; 17.39; 13.90; 13.09.
HRMS calc. for C₂₄H₃₆N₄O₄: 444.2736; found: 444.2726±0.0013
HPLC (standard gradient) t_R=6.80 min.

Compound 144

¹H NMR (300 MHz, CD₃OD) δ 7.4 (m, 1H); 7.27 (dt, 1H, 1.5 Hz, 6.6 Hz); 7.22-7.14 (m, 2H); 7.08-6.98 (m, 2H); 6.78 9t, 2H, 6.6 Hz); 4.45-4.39 (m, 2H); 4.15 (d, 2H, 8.1 Hz); 7.74 (d, 1H, 9.3 Hz); 3.54 (d, 1H, 10.8 Hz); 3.35−3.22 (m, 2H); 3.20 (q, 1H, 1.5 Hz); 2.82-2.71 (m, 1H); 2.61-2.55 (m, 1H); 2.21-2.11 (m, 1 h); 2.02-1.94 (m, 1H); 1.74-1.40 (m, 5H); 1.04 (d, 3H, 6.6 Hz); 0.93 (d, 3H, 6.6 Hz); 0.74-0.64 9m, 1H); 0.45-0.28 (m, 2H); 0.15-0.08 (m, 1H); 0.06-0.02 (m, 1 H).
¹³C NMR (75.5 MHz, CD₃OD) δ 173.29; 172.14; 167.51; 155.47; 134.86; 134.81; 130.38; 130.31; 128.81; 128.25; 127.44; 121.63; 110.39; 107.71; 105.02; 67.10; 66.66; 62.81; 62.06; 60.10; 53.99; 41.44; 36.07; 31.91; 30.01; 29.18; 28.94; 27.79; 23.68; 23.15; 19.08; 18.25; 8.17; 4.98; 3.16.
HRMS: calc. for C₃₁H₄₁N₄O₄Cl 568.2816; found 568.2802±0.0017

F. Mass Spectral Data for Selected Compounds of the Invention

TABLE 2

Analysis of selected compounds of the invention

	Molecular	Mono-
	Weight	isotopic	M + H
Molecular Formula	(calculated)	Mass	Found

	1	C30H40N4O5	536.7	536	537
	2	C30H40N4O4	520.7	520	521
	3	C30H42N4O4	522.7	522	523
	4	C30H42N4O5	538.7	538	539
	5	C28H36N4O5	508.6	508	509
	6	C30H40N4O5S	568.7	568	569
	7	C31H42N4O5	550.7	550	551
	8	C34H42N4O5	586.7	586	587
	9	C30H40N4O5	536.7	536	537
	10	C31H42N4O5	550.7	550	551
	11	C34H44N4O4	572.7	572	573
	12	C29H38N4O5	522.6	522	523
	13	C31H44N4O4	536.7	536	537
	14	C35H46N4O4	586.8	586	587
	15	C30H41N4O4Cl	557.1	556	557
	16	C30H41N4O4Cl	557.1	556	557
	17	C32H43N5O4	561.7	561	562
	18	C29H40N4O5	524.7	524	525
	19	C30H41N4O4F	540.7	540	541
	20	C31H42N4O4	534.7	534	535
	21	C35H44N4O4	584.7	584	585
	22	C31H44N4O5	552.7	552	553
	23	C34H44N4O4	572.7	572	573
	24	C28H40N4O4S	528.7	528	529
	25	C30H41N4O4Cl	557.1	556	557
	26	C31H42N4O5	550.7	550	551
	27	C27H39N5O4S	529.7	529	530
	28	C29H41N5O4	523.7	523	524
	29	C28H39N5O5	525.6	525	526
	30	C30H41N3O6	539.7	539	540
	34	C34H40N4O6	600.7	600	601
	38	C28H36N4O5	508.6	508	509
	39	C28H36N4O5	508.6	508	509
	40	C27H34N4O5	494.6	494	495
	41	C34H40N4O5	584.7	584	585
	52	C33H38N4O5	570.7	570	571
	55	C31H43N5O5	565.7	565	566
	56	C30H41N5O5	551.7	551	552
	57	C28H36N4O6	524.6	524	525
	58	C34H40N4O6	600.7	600	601
	59	C36H41N5O5	623.7	623	624
	60	C35H42N4O6	614.7	614	615
	65	C24H36N4O4	444.6	444	445
	71	C29H40N4O6	540.7	540	541
	72	C38H42N4O5	634.8	634	635
	76	C38H42N4O5	634.8	634	635
	77	C31H42N4O5	550.7	550	551
	80	C31H42N4O5	550.7	550	551
	85	C30H40N4O5	536.7	536	537
	87	C36H46N4O4	598.8	598	599
	88	C34H50N4O5	594.8	594	595
	89	C31H44N4O4	536.7	536	537
	90	C36H46N4O4	598.8	598	599
	91	C30H42N4O5	538.7	538	539
	92	C31H44N4O5	552.7	552	553
	96	C28H38N4O5	510.6	510	511
	97	C33H46N4O5	578.7	578	579
	98	C24H39N5O4	461.6	461	462
	99	C24H39N5O4	461.6	461	462
	109	C29H41N5O5	539.7	539	540
	110	C29H41N5O5	539.7	539	540
	111	C30H41N3O6	539.7	539	540
	112	C31H44N4O5	552.7	552	553
	120	C30H38N4O5	534.6	534	535
	121	C32H45N5O6	595.7	595	596
	122	C31H43N4O4Cl	571.2	570	571
	123	C29H41N5O4	523.7	523	524
	124	C29H41N5O4	523.7	523	524
	125	C30H40N4O5	536.7	536	537
	126	C32H46N4O5	566.7	566	567
	127	C30H38N6O3S	562.7	562	563
	128	C32H46N4O5	566.7	566	567
	129	C35H46N4O4	586.8	586	587
	130	C29H42N4O4S	542.7	542	543
	131	C31H43N4O4Cl	571.2	570	571
	132	C31H43N4O4Cl	571.2	570	571
	133	C31H43N4O4F	554.7	554	555
	134	C25H37N4O3Cl	477.0	476	477
	135	C31H45N5O5	567.7	567	568
	136	C34H45N5O4	587.8	587	588
	137	C28H41N5O4S	543.7	543	544
	138	C30H42N5O4Cl	572.1	571	572
	139	C30H42N5O4Cl	572.1	571	572
	140	C30H42N5O4F	555.7	555	556
	141	C32H44N4O5	564.7	564	565
	142	C35H44N4O4	584.7	584	585
	143	C29H40N4O4S	540.7	540	541
	144	C31H41N4O4Cl	569.1	568	569
	145	C31H41N4O4Cl	569.1	568	569
	146	C31H41N4O4F	552.7	552	553
	147	C31H43N5O5	565.7	565	566
	148	C34H43N5O4	585.7	585	586
	149	C30H40N5O4Cl	570.1	569	570
	150	C30H40N5O4Cl	570.1	569	570
	151	C30H40N5O4F	553.7	553	554
	152	C29H41N5O5	539.7	539	540
	153	C32H41N5O4	559.7	559	560
	154	C26H37N5O4S	515.7	515	516
	155	C28H38N5O4Cl	544.1	543	544
	156	C28H38N5O4Cl	544.1	543	544
	157	C28H38N5O4F	527.6	527	528
	158	C27H37N6O4Cl	545.1	544	545
	159	C31H44N4O5	552.7	552	553
	160	C31H44N4O5	552.7	552	553
	161	C31H45N5O4	551.7	551	552
	162	C31H44N4O4	536.7	536	537
	163	C31H44N4O4	536.7	536	537
	164	C31H44N4O4	536.7	536	537
	165	C31H44N4O5	552.7	552	553
	166	C31H44N4O5	552.7	552	553
	167	C32H42N4O4S	578.8	578	579
	168	C28H40N4O4S	528.7	528	529
	169	C31H43N4O4Cl	571.2	570	571
	170	C30H40N4O4Cl2	591.6	590	591
	171	C30H40N4O4F2	558.7	558	559
	172	C32H46N4O6	582.7	582	583
	173	C34H43N3O5	573.7	573	574
	174	C31H43N3O6	553.7	553	554
	175	C31H44N4O5	552.7	552	553
	176	C31H44N4O5	552.7	552	553
	177	C29H40N4O5	524.7	524	525
	178	C29H40N4O6	540.7	540	541
	179	C32H40N4O5	560.7	560	561
	180	C26H36N4O5S	516.7	516	517
	181	C28H37N4O5Cl	545.1	544	545
	182	C28H37N4O5Cl	545.1	544	545
	183	C28H37N4O5F	528.6	528	529
	184	C31H40N6O4	560.7	560	561
	185	C27H37N6O4Cl	545.1	544	545
	186	C31H40N6O5	576.7	576	577
	187	C31H41N4O4F3	590.7	590	591
	188	C30H41N4O4F	540.7	540	541
	189	C30H41N5O6	567.7	567	568
	190	C33H42N4O4S	590.8	590	591
	191	C32H44N4O5	564.7	564	565
	192	C31H4ON4O4Cl2	603.6	602	603
	193	C31H40N4O4F2	570.7	570	571
	194	C32H48N6O6	612.8	612	613
	195	C32H46N4O5	566.7	566	567
	196	C32H43N6O4Cl	611.2	610	611
	197	C32H45N6O5Cl	629.2	628	629
	198	C32H43N4O4Cl	583.2	582	583
	199	C27H39N4O6Cl	551.1	550	551
	200	C31H39N4O4Cl	567.1	566	567
	201	C34H42N4O4	570.7	570	571
	202	C31H42N4O5	550.7	550	551
	203	C30H40N5O5Cl	586.1	585	586
	204	C29H40N7O4Cl	586.1	585	586
	205	C32H45N4O4Cl	585.2	584	585
	206	C29H40N5O6SCl	622.2	621	622
	207	C29H39N6O5Cl	587.1	586	587
	208	C29H41N7O5	567.7	567	568
	209	C30H41N5O6	567.7	567	568
	210	C31H45N5O5	567.7	567	568
	211	C30H42N5O4Cl	572.1	571	572
	212	C31H44N5O4Cl	586.2	585	586
	213	C30H40N4O512	790.5	790	791
	214	C30H42N4O6	554.7	554	555
	215	C30H43N5O5	553.7	553	554
	216	C32H43N4O4Cl	583.2	582	583
	217	C31H40N4O4FCl	587.1	586	587
	218	C31H43N4O4Cl	571.2	570	571
	219	C30H40N4O4Cl2	591.6	590	591
	220	C31H43N4O4F	554.7	554	555
	221	C30H40N4O4FCl	575.1	574	575
	222	C34H50N4O5	594.8	594	595
	223	C32H44N4O6	580.7	580	581
	224	C36H48N4O4	600.8	600	601
	225	C37H48N4O5	628.8	628	629
	226	C39H49N5O4S	683.9	683	684
	227	C42H52N4O4	676.9	676	677

Notes
1. Molecular formulas and molecular weights (MW) are calculated automatically from the structure via ActivityBase ® software (IDBS, Guildford, Surrey, UK) or, for MW only, from the freeware program Molecular Weight Calculator v. 6.32
2. M + H obtained from LC-MS analysis using the General Method as described
3. All analyses conducted on material after preparative HPLC purification

Biological Methods and Results

The compounds of the present invention were evaluated for their ability to interact at the human motilin receptor utilizing a competitive radioligand binding assay as described in Method B1. Further characterization of the interaction can be performed utilizing the functional assays described in Methods B2, B3 and B4. Some of these methods can be conducted, if so desired, in a high throughput manner to permit the simultaneous evaluation of many compounds. Other assays have also been described that are suitable for HTS, such as that based upon the stable expression of a synthetic gene for the human motilin receptor.
Results for the examination of representative compounds of the present invention using Method B1 are presented in Table 3. The binding activity is listed as ranges with the following levels: A=0.001-0.10 μM; B=0.10-1.0 μM; C=1.0-10.0 μM. In addition, the assay results of two additional compounds using this Method are shown below. As can be observed, this demonstrates the activity of a representative bicyclic compound of Formula IV of the invention, which resulted from incorporation of D-proline as the second recognition building block. Significantly, the lack of binding activity obtained with compound 121, which is the linear analogue of compound 1 (K_i=level B), illustrates the critical importance of the cyclic structure to attaining the desired interaction.
Competitive binding curves for two representative compounds of the invention (Compounds 8 and 11) are presented in FIG. 23 and FIG. 24, respectively.
For determination of functional significance of the binding, the compounds are preferably tested in the Aequorin assay as described in Method B2, although the procedure of Method B3 is also applicable. As can be seen from the data presented in Table 4, the representative compounds examined act as antagonists at the motilin receptor and are devoid of agonist activity at the concentrations studied. The functional activity is listed as ranges with the following levels: A=0.001-0.10 μM; B=0.10-1.0 μM. The higher sensitivity of the assay of Method B2, almost 100 times that of Method C, makes it the preferred one for this assessment. This is evident in the EC₅₀values obtained in each for the positive agonist standard, motilin. Additionally, Method B2 measures the actual signaling event, which makes it more relevant to the effect that is desired, whereas the assay of Method B3 simply measures GTP turnover.

TABLE 4

Demonstration of Antagonist Activity at the Motilin Receptor

Aequorin (Method B2)¹

Compound	Binding (K_i)	IC₅₀

142	A	B
149	A	B
167	A	A
168	A	A
212	A	A
Motilin	0.6	not applicable
(human, porcine)²

¹Activity is listed as ranges with the following levels: A = 0.001-0.10 μM; B = 0.10-1.0 μM
²Human and porcine motilin are the same peptide.

In addition, a common and scientifically-accepted ex vivo assay for the measurement of agonist or antagonist activity at the motilin receptor is the contraction of rabbit duodenum or other gastrointestinal smooth muscle tissue.^A2-A4Agonists are defined as compounds that induce>50% contraction relative to the motilin peptide, whereas antagonists are defined as compounds that cause>50% inhibition of the response to motilin. Compounds of the present invention have shown significant antagonist activity in this assay. For example, compound 144 exhibited a pA₂=6.95, while compound 165 had a pA₂=7.17, as calculated from the Schild plots of the response obtained at various concentrations as described in Method B4.
Gastric motility is generally measured in the clinical setting as the time required for gastric emptying and subsequent transit time through the GI tract. Gastric emptying scans are well known to those skilled in the art an, briefly, comprise use of an oral contrast agent, such as barium, or a radiolabeled meal. Solid and liquids can be measured independently. A test food or liquid is radiolabeled with an isotope (^99mTc) and after ingestion or administration, transit time through the GI tract and gastric emptying are measured by visualization using gamma cameras. These studies are performed before and after the administration of the therapeutic agent to quantify the efficacy of the compound.

Example Method B1: Competitive Radioligand Binding Assay (Motilin Receptor)

Materials:

- Membranes were prepared from CHO cells stably transfected with the human motilin receptor and utilized at a quantity of 1.5 μg/assay point. [PerkinElmer™ SignalScreen® Product #6110544, PerkinElmer, Inc., Wellesley, Mass.]
- [¹²⁵I]-Motilin (PerkinElmer, #NEX-378); final concentration: 0.04-0.06 nM
- Motilin (Bachem™, #H-4385, Bachem Bioscience Inc., King of Prussia, Pa.); final concentration: 1 μM
- Multiscreen® Harvest plates-GF/B (Millipore™, #MAHFBI H60, Billerica, Mass.)
- Deep-well polypropylene titer plate (Beckman Coulter™, #267006, Fullerton, Calif.)
- TopSeal-A™ (PerkinElmer, #6005185, Wellesley, Mass.)
- Bottom seal (Millipore™, #MATAHOPOO, Billerica, Mass.)
- MicroScint-O™ (PerkinElmer, #6013611, Wellesley, Mass.)
- Binding Buffer: 50 mM Tris-HCl (pH 7.4), 10 mM MgCl₂, 1 mM EDTA, 0.1% BSA

Assay Volumes:

- 150 μL of membranes diluted in binding buffer
- 10 μL of compound diluted in binding buffer
- 10 μL of radioligand ([¹²⁵I]-Motilin) diluted in binding buffer

Final Test Concentrations (N=11) for Compounds:

- 10, 5, 2, 1, 0.5, 0.2, 0.1, 0.05, 0.02, 0.01, 0.005 μM.

Compound Handling:

Compounds were provided frozen on dry ice at a stock concentration of 10 mM diluted in 100% DMSO and stored at −20° C. until the day of testing. On the test day, compounds were allowed to thaw at room temperature and than diluted in assay buffer according to the desired test concentrations. Under these conditions, the maximum final DMSO concentration in the assay was 0.5%.

Assay Protocol:

In deep-well plates, diluted cell membranes (1.5 μg/mL) are combined with 10 μL of either binding buffer (total binding, N=5), 1 μM motilin (non-specific binding, N=3) or the appropriate concentration of test compound. The reaction is initiated by addition of 10 μl of [¹²⁵I]-motilin (final conc. 0.04-0.06 nM) to each well. Plates are sealed with TopSeal-A, vortexed gently and incubated at room temperature for 2 hours. The reaction is arrested by filtering samples through pre-soaked (0.3% polyethyleneimine, 2 h) Multiscreen Harvest plates using a Tomtec® Harvester (Tomtec, Hamden, Conn.)), washed 9 times with 500 μL of cold 50 mM Tris-HCl (pH 7.4), and than plates are air-dried in a fumehood for 30 minutes. A bottom seal is applied to the plates prior to the addition of 25 μL of MicroScint-0™ to each well. Plates are then sealed with TopSeal-A® and counted for 30 sec per well on a TopCount® Microplate Scintillation and Luminescence Counter (PerkinElmer, Wellesley, Mass.) where results are expressed as counts per minute (cpm).
Data are analyzed by GraphPad™ Prism (GraphPad Software, San Diego, Calif.) using a variable slope non-linear regression analysis. K_ivalues were calculated using a K_dvalue of 0.16 nM for [¹²⁵I]-motilin (previously determined during membrane characterization).
$D_{m ax} = 1 - \frac{\begin{matrix} test concentration with maximal displacement - \\ non - specific binding \end{matrix}}{total binding - non - specific binding} \times 100$
where total and non-specific binding represent the cpm obtained in the absence or presence of 1 μM motilin, respectively.

Example Method B2: Aequorin Functional Assay (Motilin Receptor)

Materials:

- Membranes were prepared using AequoScreen™ (EUROSCREEN, Belgium) cell lines expressing the human motilin receptor (cell line ES-380-A; receptor accession #AF034632). This cell line is constructed by transfection of the human motilin receptor into CHO-K1 cells co-expressing G_α16and the mitochondrially targeted Aequorin (Ref #ES-WT-A5).
- Motilin (Bachem™, #H-4385, Bachem Bioscience Inc., King of Prussia, Pa.)
- Assay buffer: DMEM-F12 (Dulbeccoe's Modified Eagles Medium) with 15 mM HEPES and 0.1% BSA (pH 7.0)
- Coelenterazine (Molecular Probes™, Leiden, The Netherlands)

Final Test Concentrations (N=5) for Compounds:

- 10, 3.16, 1, 0.316, 0.1 μM.

Compound Handling:

Compounds were provided as dry films at a quantity of approximately 1.2 μmol in pre-formatted 96-well plates. Compounds were dissolved in 100% DMSO at a concentration of 10 mM and stored at −20° C. until further use. Daughter plates were prepared at a concentration of 500 μM in 30% DMSO with 0.1% BSA and stored at −20° C. until testing. On the test day, compounds were allowed to thaw at room temperature and than diluted in assay buffer according to the desired test concentrations. Under these conditions, the maximum final DMSO concentration in the assay was 0.6%.

Cell Preparation:

Cells are collected from culture plates with Ca²⁺and Mg²⁺-free phosphate buffered saline (PBS) supplemented with 5 mM EDTA, pelleted for 2 minutes at 1000×g, resuspended in assay buffer (see above) at a density of 5×10⁶cells/mL and incubated overnight in the presence of 5 μM coelenterazine. After loading, cells were diluted with assay buffer to a concentration of 5×10⁵cells/mL.

Assay Protocol:

For agonist testing, 50 μl of the cell suspension was mixed with 50 μl of the appropriate concentration of test compound or motilin (reference agonist) in 96-well plates (duplicate samples). The emission of light resulting from receptor activation was recorded using the Functional Drug Screening System 6000 ‘FDSS 6000’ (Hamamatsu Photonics K.K., Japan).
For antagonist testing, an approximate EC80 concentration of motilin (i.e. 0.5 nM; 100 μL) was injected onto the cell suspension containing the test compounds (duplicate samples) 15−30 minutes after the end of agonist testing and the consequent emission of light resulting from receptor activation was measured as described in the paragraph above.
Results are expressed as Relative Light Units (RLU). Concentration response curves were analyzed using GraphPad™ Prism® (GraphPad Software, San Diego, Calif.) by non-linear regression analysis (sigmoidal dose-response) based on the equation E=E_max/(1+EC₅₀/C)n where E is the measured RLU value at a given agonist concentration (C), E_maxis the maximal response, EC₅₀is the concentration producing 50% stimulation and n is the slope index. For agonist testing, results for each concentration of test compound were expressed as percent activation relative to the signal induced by motilin at a concentration equal to the EC₈₀(i.e. 0.5 nM). For antagonist testing, results for each concentration of test compound were expressed as percent inhibition relative to the signal induced by motilin at a concentration equal to the EC₈₀(i.e. 0.5 nM).

Example Method B3: Flash Plate® Motilin [³⁵S]-GTPγS Functional Assay

Materials:

- Membranes were prepared from CHO cells stably transfected with the human motilin receptor and utilized at a quantity of 1.5 μg/assay point. [PerkinElmer™ SignalScreen® Product #6110544, PerkinElmer, Inc. Wellesley, Mass.]
- GTPγS Guanosine 5′-[y-thio]triphosphate tetralithium salt (Sigma, #G-8634, Sigma-Aldrich, St. Louis, Mo.)
- [³⁵S]-GTPγS (PerkinElmer, #NEX-030 H)
- Motilin (Bachem™, #H-4385, Bachem Bioscience Inc., King of Prussia, Pa.)
- 96-well FlashPlate® white polystyrene microplates (PerkinElmer, #SMP200, Wellesley, Mass.)
- Deep-well polypropylene titer plate (Beckman Coulter™, #267006, Fullerton, Calif.)
- TopSeal-A™ (PerkinElmer, #6005185, Wellesley, Mass.)
- Assay Buffer: 50 mM Tris (pH 7.4), 100 mM NaCl, 10 mM MgCl₂, 1 mM EDTA, 1 μM GDP, 0.1% BSA

Assay Volumes:

- 25 μL of compound diluted in assay buffer
- 25 μL of assay buffer (agonist assay) or 0.6 μM motilin (0.1 μM final concentration) diluted in assay buffer (antagonist assay)
- 100 μL of [³⁵S]-GTPγS diluted in assay buffer

Final Test Concentrations (N=12) for Compounds:
50, 20, 10, 5, 2, 1, 0.5, 0.2, 0.1, 0.05, 0.02, 0.01 μM.

Compound Handling:

Assay Protocol:

CHO membranes were immobilized into 96-well FlashPlate® microplates. Test compound, GTPγS, motilin and [³⁵S]-GTPγS were combined in each well according to the Assay Volumes described above.
For the assay to measure agonist activity, an additional 25 μl of buffer was added to each well in addition to 25 μL of either buffer (basal value, N=4), 1 μM (final conc.) motilin (E_maxvalue, N=3), 25 μM (final conc.) GTPγS (non-specific value, N=4), or the appropriate concentration of test compound (N=3).
For the assay to measure antagonist activity, an additional 25 μL of either buffer (unstimulated control) or motilin (0.1 μM final conc.) is added to each well, in addition to either 25 μL of buffer (basal value, N=3), 1 μM (final conc.) motilin (E_maxvalue, N=3), 25 μM (final conc.) GTPγS (non-specific value, N=4), or the appropriate concentration of test compound (N=3).
The reaction is initiated by addition of 100 mL of [³⁶S]-GTPγS to each well. Each plate is sealed (TopSeal-A™) and incubated in the dark at room temperature for 150 min. Then, plates are counted for 30 seconds per well on the TopCount® NXT.
Data were analyzed by GraphPad™ Prism® 3.0 (GraphPad Software, San Diego, Calif.) using non-linear regression analysis (sigmoidal dose-response) for the calculation of IC₅₀/EC₅₀values.
$E_{ma x} (agonist) or D_{ma x} (antagonist) = \frac{Top - Bottom}{Bottom} \times 100$
Where Top and Bottom correspond to the top and bottom values of the dose-response curve calculated by GraphPad™ Prism®).

Example Method B4: Rabbit Duodenum Contractility Assay

Duodenal segments were vertically suspended in organ chambers of 10 mL filled with Krebs buffer and connected to an isotonic force transducer, with a preload of 1 g. After a stabilization period, the muscle strips were challenged with 10⁻⁴M acetylcholine and washed. This was repeated until a stable maximal contraction was obtained (2-3 times), with an interval of at least 20 minutes.
After a stable base line was reached, test compounds were added to the bath. After 15 min incubation, a dose response to motilin was recorded by adding logarithmically increasing concentrations of motilin to the bath (final concentration 10⁻⁹to 10^.6M). A blank experiment (no test compound present) was also performed. At the end of the dose response curve, a supramaximal dose of acetylcholine (10⁻⁴M) was given and this response was used as a reference (100% contraction).
The results of experiments at different concentrations of test compound were combined and analyzed to derive the pA₂value from the Schild plot.
It is appreciated that although specific experimental methods have been described herein for the purposes of illustration, various modifications to these experimental methods as well as alternate methods of experimentation may be used without departing from the scope of this invention.

TABLE 3

Binding activity of selected compounds

	R₁	R₃	R₆

1

2

3

4

5		CH3

6

7

8

9

10

11

12

13

14

15

16

17

18

19

20

21

22

23

24

25

26

27

28

29

30

34

38			CH₃

39			H

40			H

41

52

55

56

57

58

59

60

65

71

72

76

77

80

85			H

87

88

89

90

91

92

96		H

97

98

99

109

110

111

112

122

123

124

125

126

127

128

129

130

131

132

133

134

135

136

137

138

139

140

141

142

143

144

145

146

147

148

149

150

151

152

153

154

155

156

157

158

159

160

161

162

163

164

165

166

167

168

169

170

171

172

173

174

175

176

177

178

179

180

181

182

183

184

185

186

187

188

189

190

191

192

193

194

195

196

197

198

199

200

201

202

203

204

205

206

207

208

209

210

211

212

213

214

215

216

217

218

219

220

221

222

223

224

225

226

227


		T	K	_i ^1,2

	1		B

	2		A

	3		B

	4		A

	5		B

	6		B

	7		B

	8		B

	9		B

	10		A

	11		A

	12		B

	13		B

	14		B

	15		A

	16		A

	17		B

	18		B

	19		A

	20		B

	21		A

	22		A

	23		A

	24		A

	25		B

	26		A

	27		B

	28		B

	29		B

	30		B

	34		B

	38		B

	39		B

	40		C

	41		C

	52		B

	55		B

	56		B

	57		B

	58		B

	59		B

	60		C

	65		B

	71		B

	72		B

	76		C

	77		C

	80		B

	85		B

	87		B

	88		C

	89		C

	90		C

	91		C

	92		B

	96		C

	97		C

	98		C

	99		C

	109		B

	110		B

	111		B

	112		B

	122		B

	123		B

	124		B

	125		B

	126		B

	127		B

	128		B

	129		A

	130		B

	131		A

	132		A

	133		A

	134		C

	135		B

	136		B

	137		B

	138		B

	139		B

	140		B

	141		A

	142		A

	143		B

	144		A

	145		A

	146		A

	147		B

	148		B

	149		A
	150		B

	151		B

	152		B

	153		B

	154		B

	155		A

	156		A

	157		B

	158		A

	159		B

	160		B

	161		B

	162		B

	163		A

	164		B

	165		A

	166		B

	167		A

	168		A

	169		B

	170		A

	171		A

	172		A

	173		B

	174		B

	175		B

	176		B

	177		B

	178		B

	179		B

	180		B

	181		A

	182		A

	183		B

	184		B

	185		B

	186		B

	187		A

	188		A

	189		B

	190		A

	191		A

	192		A

	193		A

	194		B

	195		A

	196

	197

	198		A

	199		B

	200		A

	201		B

	202		A

	203		B

	204		A

	205		B

	206		B

	207		B

	208		B

	209		C

	210

	211		A

	212		A

	213		B

	214		B

	215		B

	216		A

	217		B

	218		A

	219		B

	220		A

	221		B

	222		A

	223		C

	224		B

	225		B

	226		C

	227		B

Notes
Radioligand competitive binding assays performed using Method B1
Values reported as ranges: A = 0.001-0.100 μM; B = 0.100-1.0 μM; C = 1.0-10.0 μM
X is NH except for:
Compound 223 and 225, X is:
Compound 224, X is NMe
Compound 226, X is:
Compound 227, X is
Z₁, Z₂and Z₃are NH except for compounds 30, 173 and 174 and where Z1 is O and compound 111 where Z₂is O.
R₂, R₄and R₅are hydrogen except for compound 85 where it is:
m, n₁and p are zero.

Claims

1-39. (canceled)

40. A compound of formula (IV):

wherein R₁is C₁-C₄alkyl; PG₅is hydrogen or an amine protecting group; and PG₆is hydrogen or a hydroxy protecting group.

41. The compound of claim 40, wherein R₁is methyl.

42. The compound of claim 40, wherein PG₅is hydrogen.

43. The compound of claim 40, wherein PG₅is a carbamate protecting group.

44. The compound of claim 40, wherein PG₅is selected from the group consisting of tert-butoxycarbonyl (Boc), benzyloxycarbonyl (Cbz), 9-fluorenylmethoxycarbonyl (Fmoc), α,α-dimethyl-3,5-dimethoxybenzyloxycarbonyl (Ddz) and allyloxycarbonyl (Alloc).

45. The compound of claim 40, wherein PG₆is hydrogen.

46. The compound of claim 40 represented by the following structures:

wherein PG₅is hydrogen or an amine protecting group; and PG₆is hydrogen or a hydroxy protecting group.

47. The compound of claim 44, wherein PG₅is α,α-dimethyl-3,5-dimethoxybenzyloxy-carbonyl (Ddz).

48. The compound of claim 46, wherein PG₅is α,α-dimethyl-3,5-dimethoxybenzyloxy-carbonyl (Ddz).

49. The compound of claim 47 represented by the following structures:

50. The compound of claim 44, wherein PG₅is tert-butoxycarbonyl (Boc).

51. The compound of claim 50 represented by the following structures:

52. A process of using a compound of claim 40 to make a compound of formula (I);

wherein R₁is C₁-C₄alkyl.

53. A process of using a compound of claim 40 to make a compound of formula (G);

wherein R₁is C₁-C₄alkyl and PG₁is an amine protecting group.