WO2000063253A1 - Agp-1 fusion protein compositions and methods - Google Patents

Agp-1 fusion protein compositions and methods Download PDF

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Publication number
WO2000063253A1
WO2000063253A1 PCT/US2000/008004 US0008004W WO0063253A1 WO 2000063253 A1 WO2000063253 A1 WO 2000063253A1 US 0008004 W US0008004 W US 0008004W WO 0063253 A1 WO0063253 A1 WO 0063253A1
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protein
gly
ala
derivative
agp
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PCT/US2000/008004
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French (fr)
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Hailing Hsu
Shi-Yuan Meng
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Amgen Inc.
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Priority to AU39230/00A priority Critical patent/AU3923000A/en
Publication of WO2000063253A1 publication Critical patent/WO2000063253A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/70575NGF/TNF-superfamily, e.g. CD70, CD95L, CD153, CD154
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/30Non-immunoglobulin-derived peptide or protein having an immunoglobulin constant or Fc region, or a fragment thereof, attached thereto
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2799/00Uses of viruses
    • C12N2799/02Uses of viruses as vector
    • C12N2799/021Uses of viruses as vector for the expression of a heterologous nucleic acid
    • C12N2799/026Uses of viruses as vector for the expression of a heterologous nucleic acid where the vector is derived from a baculovirus

Definitions

  • the present invention has a number of aspects relating to the modification of proteins via fusion of an Fc region to an AGP-1 protein (or variant, fragments or derivative thereof), as well as, specific modifications, preparations and methods of use thereof.
  • the present invention provides for a protein having a formula selected from the group consisting of: R. - R 2 and R 1 - L - R 2 , wherein R. is a Fc protein, or a variant or fragment thereof, R 2 is an AGP-1 protein, or variant or fragment thereof, and L is a linker.
  • the invention provides for genetic or chemical linkages of the Rl and R2 moieties as described herein.
  • Figure 3 shows the nucleotide and amino acid sequence of Fc-huAGP-1 (95- 281) . Amino acids corresponding to OPG signal peptide are underlined. Amino acids corresponding to human AGP-1 (95-281) are bracketed.
  • Figure 5 shows the nucleotide and amino acid sequence of Fc-muAGP-1 (99- 291) . Amino acids corresponding to OPG signal peptide are underlined. Amino acids corresponding to murine AGP-1 (99-291) are bracketed.
  • the invention provides for FcAGP-1 fusion polypeptides and compositions thereof. Fusions of an Fc region to an AGP-1 polypeptide are advantageously made at the amino terminus of AGP-1, that is, the carboxy terminus of an Fc region is fused to the amino terminus of AGP-1.
  • These fusion proteins (and nucleic acids encoding same) are designated herein as FcAGP-1. However, it is also contemplated that, in certain instances, it may be desirable to fuse the carboxy terminus of AGP-1 to the amino terminus of an Fc region.
  • the fusion proteins (and nucleic acids encoding same) are designated herein as AGP-lFc.
  • Fc variants may also be made which show reduced binding to Fc receptors which trigger effector functions such as antibody dependent cellular cytotoxicity (ADCC) and activation of complement.
  • ADCC antibody dependent cellular cytotoxicity
  • Such variants may include leucine at position 20 deleted or substituted with a glutamine residue, glutamate at position 103 deleted or substituted with an alanine residue, and lysines at positions 105 and 107 deleted or substituted with alanine residues (following the numbering as set forth in Figure 1) .
  • One or more of such substitutions are contemplated.
  • Fc variants include one or more tyrosine residues replaced with, for example, phenyalanine residues.
  • other variant amino acid insertions, deletions and/or substitutions are also contemplated and are within the scope of the present invention. Examples include Fc variants disclosed in W096/32478 and WO97/34630 hereby incorporated by reference.
  • alterations may be in the form of altered amino acids, such as peptidomimetics or D-amino acids.
  • the Fc protein may be also linked to the AGP- 1 proteins of the Fc-AGP-1 protein by "linker" moieties whether chemical or amino acids of varying lengths.
  • a nucleic acid molecule encoding an Fc-AGP-1 fusion protein is inserted into an appropriate expression vector using standard ligation techniques.
  • the vector is typically selected to be functional in the particular host cell employed (i.e., the vector is compatible with the host cell machinery such that amplification of the gene and/or expression of the gene can occur) .
  • a nucleic acid molecule encoding an FcAGP-1 protein may be amplified/expressed in prokaryotic, yeast, insect (baculovirus systems) and/or eukaryotic host cells. Selection of the host cell will depend in part on whether an Fc-AGP-1 protein is to be post-translationally modified (e.g, glycosylated and/or phosphorylated) . If so, yeast, insect, or mammalian host cells are preferable.
  • a heterologous signal sequence is the OPG signal sequence as described in W097/23614.
  • the signal sequence is substituted by a prokaryotic signal sequence selected, for example, from the group of the alkaline phosphatase, penicillinase, or heat-stable enterotoxin II leaders.
  • the native AGP-1 signal sequence may be substituted by the yeast invertase, alpha factor, or acid phosphatase leaders.
  • the native signal sequence is satisfactory, although other mammalian signal sequences may be suitable.
  • the recombinant molecules can be introduced into host cells via transformation, transfection, infection, electroporation, or other known techniques. After the vector has been constructed and a nucleic acid molecule encoding an AGP-1 polypeptide has been inserted into the proper site of the vector, the completed vector may be inserted into a suitable host cell for amplification and/or polypeptide expression.
  • mammalian host cells include primate cell lines and rodent cell lines, including transformed cell lines. Normal diploid cells, cell strains derived from in vi tro culture of primary tissue, as well as primary explants, are also suitable. Candidate cells may be genotypically deficient in the selection gene, or may contain a dominantly acting selection gene.
  • Other suitable mammalian cell lines include but are not limited to, mouse neuroblastoma N2A cells, HeLa, mouse L-929 cells, 3T3 lines derived from Swiss, Balb-c or NIH mice, BHK or HaK hamster cell lines. Each of these cell lines is known by and available to those skilled in the art.
  • Similarly useful as host cells suitable for the present invention are bacterial cells . For example, the various strains of E.
  • Such procedures include, without limitation, ion exchange chromatography, molecular sieve chromatography, HPLC, native gel electrophoresis in combination with gel elution, and preparative isoelectric focusing ("Isoprime” machine/technique, Hoefer Scientific) . In some cases, two or more of these techniques may be combined to achieve increased purity.
  • the pellet material can then be treated at pH extremes or with chaotropic agent such as a detergent, guanidine, guanidine derivatives, urea, or urea derivatives in the presence of a reducing agent such as dithiothreitol at alkaline pH or tris carboxyethyl phosphine at acid pH to release, break apart, and solubilize the inclusion bodies.
  • a reducing agent such as dithiothreitol at alkaline pH or tris carboxyethyl phosphine at acid pH to release, break apart, and solubilize the inclusion bodies.
  • An AGP-1 polypeptide in its now soluble form can then be analyzed using gel electrophoresis, immunoprecipitation or the like. If it is desired to isolate an AGP-1 polypeptide, isolation may be accomplished using standard methods such as those set forth below and in Marston et al . (Meth. Enz . , 182, 264-275 (1990)).
  • polyaminoacids may be selected from the group consisting of serum album (such as human serum albumin), or other polyaminoacids, e.g. lysines. As indicated below, the location of attachment of the polyaminoacid may be at the N-terminus of the Fc-AGP-1 protein moiety, or C-terminus, or other places in between, and also may be connected by a chemical "linker" moiety to the Fc-AGP-1 protein.
  • serum album such as human serum albumin
  • polyaminoacids e.g. lysines
  • the optimum ratio in terms of efficiency of reaction in that there is no excess unreacted protein or polymer
  • the desired degree of derivatization e.g., mono, di-, tri-, etc.
  • the molecular weight of the polymer selected whether the polymer is branched or unbranched, and the reaction conditions.
  • N-terminal pegylation ensures a homogenous product as characterization of the product is simplified relative to di-, tri- or other multi-pegylated products.
  • the use of the above reductive alkylation process for preparation of an N-terminal product is preferred for ease in commercial manufacturing.
  • Hylauronic acid may also be used, and this may have the effect of promoting sustained duration in the circulation.
  • Such compositions may influence the physical state, stability, rate of in vivo release, and rate of in vivo clearance of the present proteins and derivatives. See, e. a. . Remington's Pharmaceutical Sciences, 18th Ed. (1990, Mack Publishing Co., Easton, PA 18042) pages 1435-1712 which are herein incorporated by reference.
  • the compositions may be prepared in liquid form, or may be in dried powder, such as lyophilized form. Implantable sustained release formulations are also contemplated, as are transdermal formulations.
  • the glidants may include starch, talc, pyrogenic silica and hydrated silicoaluminate.
  • nonionic detergents that could be included in the formulation as surfactants are lauromacrogol 400, polyoxyl 40 stearate, polyoxyethylene hydrogenated castor oil 10, 50 and 60, glycerol monostearate, polysorbate 40, 60, 65 and 80, sucrose fatty acid ester, methyl cellulose and carboxymethyl cellulose. These surfactants could be present in the formulation of the protein or derivative either alone or as a mixture in different ratios.
  • pulmonary delivery of the present protein (or derivatives thereof) is delivered to the lungs of a mammal while inhaling and traverses across the lung epithelial lining to the blood stream.
  • Adjei et al . Pharmaceutical Research 1 565-569 (1990); Adjei et al . , International Journal of Pharmaceutics ,6_3: 135-144 (1990) (leuprolide acetate); Braquet et al . , Journal of Cardiovascular Pharmacology 13 (suppl. 5): s.143-146 (1989) (endothelin-1) ;Hubbard et al . , Annals of Internal Medicine 3: 206-212 (1989) ( ⁇ l-antitrypsin) ; Smith et al . , J. Clin. Invest. 84: 1145-1146
  • the protein (or derivative) should most advantageously be prepared in particulate form with an average particle size of less than 10 ⁇ m (or microns) , most preferably 0.5 to 5 ⁇ m, for most effective delivery to the distal lung.
  • the major capsid protein promoter sequence (GenBank Ace No. M22978) was PCR amplified from the Bac-N-Blue ⁇ r linear AcMNPV DNA purchased from Invitrogen (Carlsbad, CA) with the following primers:
  • Fc-AGP-1 fusion proteins were purified using Pharmacia Protein A Sepharose. The resin was equilibrated with TBS containing 20mM Tris pH7.0 and 150mM NaCl before applying the media. Complete protease inhibitor cocktail (Boehringer-Mannheim) was added to the media according to the manufacturer's instructions. The media was loaded, the column washed with TBS, and protein was eluted using Gentle Elution buffer (Pierce, Rockford, IL) . Protein containing fractions were pooled and submitted for in vitro analysis .
  • EXAMPLE 4 Biological Activity of AGP-1 and AGP-1 Fusion Proteins
  • Jurkat cells (ATCC No. ) were maintained in RPMI medium 1640 containing 10% fetal calf serum, 100 mg/ml penicillin G, and 100 mg/ml streptomycin (GIBCO) .
  • GEBCO streptomycin
  • 250 ml of Jurkat cells (5 x 105 cells/ml) were seeded to each well of a 96 well plate.

Abstract

The present invention relates to Fc-AGP-1 fusion protein compositions, methods of preparation of such compositions and uses thereof. In particular, the present invention relates to a genetic or chemical fusion protein comprising the Fc immunoglobulin region, derivative or analog fused to the N-terminal portion of the AGP-1 protein, derivative or analog.

Description

AGP-1 FUSION PROTEIN COMPOSITIONS AND METHODS
Field of the Invention The present invention relates to AGP-1 fusion protein compositions and methods of preparation and use thereof .
Background of the Invention The availability of recombinant proteins for therapeutic use has led to advances in protein modifications in order to enhance or improve the properties of such proteins as pharmaceutical agents. Such modifications can provide enhanced protein protection and decreased degradation by reducing or eliminating proteolysis. Additional advantages include, under certain circumstances, increasing the stability, circulation time, and the biological activity of the therapeutic protein. A review article describing protein modifications is Francis, Focus on Growth Factors 3:4-10 (May 1992) (published by Mediscript, London, UK) .
One such modification is the use of an Fc region of an immunoglobulin molecule. Antibodies comprise two functionally independent parts, a variable domain known as "Fab", which binds antigen, and a constant domain, known as "Fc" which provides the link to effector functions such as complement or phagocytic cells . The Fc portion of an immunoglobulin has a long plasma half-life, whereas the Fab is short-lived. (Capon, et al . , Nature 337, 525-531 (1989)).
Therapeutic protein products have been constructed using the Fc domain to provide longer half- life or to incorporate functions such as Fc receptor binding, protein A binding, complement fixation and placental transfer which all reside in the Fc proteins of immunogobulins . Id. For example, the Fc region of an IgGl antibody has been fused to the N-terminal end of CD30 ligand (CD30-L) , a molecule which binds CD30 receptors expressed on Hodgkin's Disease tumor cells, anaplastic lymphoma cells, T-cell leukemia cells and other malignant cell types. See, U.S. Patent No. 5,480,981. IL-10, an anti-inflammatory and antirejection agent has been fused to murine Fcγ2a in order to increase the cytokines short circulating half- life. (Zheng et al . , The Journal of Immunology, 154 ,
5590-5600 (1995)). Studies have also evaluated the use of tumor necrosis factor receptor linked with the Fc protein of human IgGl to treat patients with septic shock. (Fisher et al . , N. Engl . J. Med. , 334: 1697- 1702 (1996); Van Zee et al . , The Journal of Immunology, 156: 2221-2230 (1996)). Fc has also been fused with CD4 receptor to produce a therapeutic protein for treatment of AIDS. See, Capon et al . , Nature, 337 : 525- 531 (1989) . In addition, the N-terminus of interleukin-2 (IL-2) has also been fused to the Fc portion of IgGl or IgG3 to overcome the short half life of IL-2 and its systemic toxicity. See, Harvill et al . , Immunotechnology, 1, 95-105 (1995).
A Type II transmembrane protein of the tumor necrosis factor (TNF) family has been identified and observed to induce apoptosis in certain tumor cell lines, but not in normal cell lines. This protein has been referred to as TRAIL (Wiley et al . Immunity 3_, 673-682 (1995)), Apo-2 (Pitti et al . J. Biol. Chem. 22, 12687-12690 (1996) and AGP-1 (W097/46686) and is referred to herein as AGP-1. AGP-1 has been studied as a soluble protein which lacks transmembrane and intracellular domains and is most advantageously used as a therapeutic in this form. However, the apoptotic activity of soluble AGP-1 is too low for it to be useful as a therapeutic.
Consequently, there exists a need to develop AGP-1 protein compositions for clinical application. Such development would include AGP-1 protein compositions which achieve increased biological activity, decreased degradation, increased stability and increased circulation time. The present invention provides such compositions.
Summary of the Invention
The present invention relates to Fc-AGP-1 fusion protein compositions, methods of preparation of such compositions and uses thereof. In particular, the present invention relates to a fusion protein comprising an Fc protein, or variant, fragment or derivative thereof, fused to the N-terminal portion of an AGP-1 protein, or variant, fragment, or derivative thereof. Unexpectedly, as described herein, a fusion of an Fc protein to the N-terminus of a soluble AGP-1 protein demonstrates enhanced biological activity compared to an unmodified soluble AGP-1 protein. Such unexpected advantages from the Fc modification to AGP-1 protein would be advantageous in that these changes contribute to lower doses required or less frequent dosing. Thus, as described below in more detail, the present invention has a number of aspects relating to the modification of proteins via fusion of an Fc region to an AGP-1 protein (or variant, fragments or derivative thereof), as well as, specific modifications, preparations and methods of use thereof. The present invention provides for a protein having a formula selected from the group consisting of: R. - R2 and R1 - L - R2, wherein R. is a Fc protein, or a variant or fragment thereof, R2 is an AGP-1 protein, or variant or fragment thereof, and L is a linker. The invention provides for genetic or chemical linkages of the Rl and R2 moieties as described herein.
In one aspect, the present invention provides a Fc-AGP-1 fusion protein wherein Fc (or a variant, fragment or derivative thereof) is genetically fused to the N-terminus of an AGP-1 protein (or a variant, fragment or derivative thereof) . In another aspect of the invention, an Fc portion may also be linked to the N-terminus of an AGP-1 protein (or a variant, fragment or derivative thereof) by a peptide or chemical linker as known in the art. As noted above and described in more detail below, the Fc-AGP-1 fusion protein has unexpected enhanced biological activity when compared to a soluble AGP-1 protein. Additional aspects of the present invention, therefore, include not only Fc-AGP-1 fusion protein compositions, but also nucleic acid sequences encoding such proteins, related vectors and host cells containing such vectors, both useful for producing fusion proteins of the present invention. In a second aspect, the present invention provides for preparing the Fc-AGP-1 fusion protein. Such methods include recombinant DNA techniques for preparation of recombinant proteins. Furthermore, such aspects include methods of protein production and purification as well.
In another aspect, the present invention provides methods for treating proliferative disorders, such as cancer or cardiovascular diseases, viral infections and viral-induced diseases, and immune disorders by administration of Fc-AGP-1 fusion proteins .
In another aspect, the present invention also provides for related pharmaceutical compositions of the Fc-AGP-1 proteins, variants, fragments and derivatives thereof, for use in the above therapies. Description of the Figures
Figure 1 (SEQ ID NO : 32) shows the amino acid sequence of the hinge, CH2 and CH3 regions of human IgGγl .
Figure 2 (SEQ ID NOS: 33 and 34) shows the nucleotide and amino acid sequence of human AGP-1.
Figure 3 (SEQ ID NOS: 35 and 36) shows the nucleotide and amino acid sequence of Fc-huAGP-1 (95- 281) . Amino acids corresponding to OPG signal peptide are underlined. Amino acids corresponding to human AGP-1 (95-281) are bracketed.
Figure 4 (SEQ ID NOS: 37 and 38) shows the nucleotide and amino acid sequence of Fc-huAGP-1 (114- 281) . Amino acids corresponding to OPG signal peptide are underlined. Amino acids corresponding to human AGP-1 (114-281) are bracketed.
Figure 5 (SEQ ID NOS: 39 and 40) shows the nucleotide and amino acid sequence of Fc-muAGP-1 (99- 291) . Amino acids corresponding to OPG signal peptide are underlined. Amino acids corresponding to murine AGP-1 (99-291) are bracketed.
Figure 6 (SEQ ID NOS: 41 and 42) shows the nucleotide and amino acid sequence of Fc-muAGP-1 (120- 291) . Amino acids corresponding to OPG signal peptide are underlined. Amino acids corresponding to murine AGP-1 (120-291) are bracketed.
Figure 7 shows the activity of soluble AGP-1 and Fc-AGP-1 fusion protein in inducing apoptosis in cultured Jurkat cells. Detailed Description of the Invention
The present invention relates to Fc-AGP-1 fusion protein compositions, methods of preparation of such compositions and uses thereof. In particular, the present invention relates to the genetic or chemical fusion of the Fc region of immunoglobulins to the N-terminal portion of the AGP-1 protein. Unexpectedly, fusion of Fc at the N-terminus of the AGP-1 protein demonstrates advantages which are not seen in soluble AGP-1 protein. Surprisingly, the N-terminally modified Fc-AGP-1 protein provides unexpected increased biological activity. Accordingly, the Fc-AGP-1 fusion protein, and variants, fragments and derivatives thereof, as well as, related methods of use and preparation, are described in more detail below. The term "Fc" refers to a molecule or sequence comprising the sequence of a non-antigen- binding portion of antibody, whether in monomeric or multimeric form. The original immunoglobulin source of an Fc is preferably of human origin and may be from any isotype, e.g., IgG, IgA, igM, igE or igD. One method of preparation of an isolated Fc molecule involves digestion of an antibody with papain to separate antigen and non-antigen binding portions of the antibody. Another method of preparation of an isolated Fc molecules is production by recombinant DNA expression followed by purification of the Fc molecules so expressed. A full-length Fc consists of the following Ig heavy chain regions: CHl, CH2 and CH3 wherein the CHl and CH2 regions are typically connected by a flexible hinge region. In one embodiment, an Fc has the amino acid sequence of IgGl such as that shown in Figure 1. The terms "Fc protein, "Fc sequence", "Fc molecules, "Fc region" and "Fc portion" are taken to have the same meaning as "Fc" . The term "fragment" when used in association with Fc or AGP-1 polypeptides, or fusion polypeptides thereof, refers to a peptide or polypeptide that comprises less than the full length amino acid sequence of an Fc or AGP-1 polypeptide. Such a fragment may arise, for example, from a truncation at the amino terminus, a truncation at the carboxy terminus, and/or an internal deletion of a residue (s) from the amino acid sequence. AGP-1 or Fc fragments may result from alternative RNA splicing or from in vivo protease activity.
The term "variant" when used in association with Fc or AGP-1 polypeptides, or with fusion polypeptides thereof, refers to a polypeptide comprising an amino acid sequence which contain one or more amino acid sequence substitutions, deletions, and/or additions as compared to native Fc or AGP-1 polypeptide amino acid sequences . Variants may be naturally occurring or artificially constructed. Variants of the invention may be prepared from the corresponding nucleic acid molecules encoding said variants, which have a DNA sequence that varies accordingly from the DNA sequences for native Fc or AGP-1 polypeptides. The term "derivative" when used in association with Fc or AGP-1 polypeptides, or with fusion polypeptides thereof, refers to Fc or AGP-1 polypeptide variants or fragments thereof, that have been chemically modified, as for example, by covalent attachment of one or more polymers, including, but limited to, water soluble polymers, N-linked or 0- linked carbohydrates, sugars, phosphates, and/or other such molecules. The derivatives are modified in a manner that is different from native Fc or AGP-1, either in the type or location of the molecules attached to the polypeptide. Derivatives further includes deletion of one or more chemical groups naturally attached to an Fc or AGP-1 polypeptide. The term "fusion" refers to joining of different peptide or protein segments by genetic or chemical methods wherein the joined ends of the peptide or protein segments may be directly adjacent to each other or may be separated by linker or spacer moieties such as amino acid residues or other linking groups.
Compositions
The invention provides for FcAGP-1 fusion polypeptides and compositions thereof. Fusions of an Fc region to an AGP-1 polypeptide are advantageously made at the amino terminus of AGP-1, that is, the carboxy terminus of an Fc region is fused to the amino terminus of AGP-1. These fusion proteins (and nucleic acids encoding same) are designated herein as FcAGP-1. However, it is also contemplated that, in certain instances, it may be desirable to fuse the carboxy terminus of AGP-1 to the amino terminus of an Fc region. The fusion proteins (and nucleic acids encoding same) are designated herein as AGP-lFc.
An Fc, or a variant, fragment or derivative thereof, may be from an Ig class. In one embodiment, an Fc is from the IgG class, such as IgGl, IgG2, IgG3 , and IgG4. In another embodiment, an Fc is from IgGl. An Fc may also comprise amino acid residues represented by a combination of any two or more of the Ig classes, such as residues from IgGl and IgG2 , or from IgGl, IgG2 and IgG3 , and so forth. In one embodiment, an Fc region of an Fc-AGP-1 fusion protein has the sequence as set forth in Figure 1 (SEQ ID NO: 32) comprising hinge CH2 and CH3 regions of human IgGl. (see Ellison et al . , Nucleic Acids Res. 10, 4071-4079 (1982). In addition to naturally occurring variations in Fc regions, Fc variants, fragments and derivatives may contain non-naturally occurring changes in Fc which are constructed by, for example, introducing substitutions, additions, insertions or deletions of residues or sequences in a native or naturally occurring Fc, or by modifying the Fc portion by chemical modification and the like. In general, Fc variants, fragments and derivatives are prepared such that the increased circulating half-life of Fc fusions to AGP-1 is largely retained. Also provided by the invention are Fc variants with conservative amino acid substitutions. The term "conservative amino acid substitution" refers to a substitution of a native amino acid residue with a nonnative residue such that there is little or no effect on the polarity or charge of the amino acid residue at that position. For example, a conservative substitution results from the replacement of a non- polar residue in a polypeptide with any other non-polar residue. General rules for conservative amino acid substitutions are set forth in Table I.
Table I Conservative Amino Acid Substitutions
Preferred
Original Residues Exemplary Substitutions Substitutions
Ala Val, Leu, lie Val
Arg Lys , Gin, Asn Lys
Asn Gin, His, Lys, Arg Gin
Asp Glu Glu
Cys Ser Ser
Gin Asn Asn
Glu Asp Asp
Gly Pro,Ala Ala
His Asn, Gin, Lys, Arg Arg lie Leu, Val, Met, la, Leu
Phe, Norleucine Leu Norleucine, lie, He
Val, Met, Ala, Phe
Lys Arg, Gin, Asn Arg Met Leu, Phe, lie Leu Phe Leu, Val, lie, Ala, Leu
Tyr
Pro Ala Ala Ser Thr Thr Thr Ser Ser Trp Tyr , Phe Tyr Tyr Trp, Phe, hr, Ser Phe Val lie, Met, Leu, Phe, Leu
Ala, Norleucine
Conservative amino acid substitutions also encompass non-naturally occurring amino acid residues which are typically incorporated by chemical peptide synthesis rather than by synthesis in biological systems. These include peptidomimetics, and other reversed or inverted forms of amino acid moieties . Conservative modifications to the amino acid sequence (and the corresponding modifications to the encoding nucleotides) are expected to produce Fc molecules (and FcAGP-1 fusion proteins) having functional and chemical characteristics similar to those of unmodified Fc and FcAGP-1 proteins.
In addition to the substitutions set forth in Table I, any native residue in an Fc region (or in an FcAGP-1 fusion protein) may also be substituted with alanine, as has been previously described for "alanine scanning mutagenesis" (Cunningham et al . Science 244, 1081-1085 (1989)). Substantial modifications in the functional and/or chemical characteristics of an Fc molecule (and an FcAGP-1 fusion protein) may be accomplished by selecting substitutions that differ significantly in their effect on maintaining (a) the structure of the molecular backbone in the area of the substitution, for example, as a sheet or helical conformation, (b) the charge or hydrophobicity of the molecule at the target site, or (c) the bulk of the side chain. Naturally occurring residues may be divided into groups based on common side chain properties:
1) hydrophobic: norleucine, Met, Ala, Val, Leu, lie;
2) neutral hydrophilic: Cys, Ser, Thr;
3) acidic: Asp, Glu; 4) basic: Asn, Gin, His, Lys, Arg;
5) residues that influence chain orientation: Gly, Pro; and
6) aromatic: Trp, Tyr, Phe.
Non-conservative substitutions may involve the exchange of a member of one of these classes for a member from another class. Such substituted residues may be introduced into regions of an Fc or AGP-1 molecule that are homologous with non-human Fc or AGP- 1, or into the non-homologous regions of the molecule. Cysteine residues in Fc molecules can be deleted or replaced with other amino acids to prevent formation of disulfide crosslinks. In particular, a cysteine residue at position 5 of Figure 1 (SEQ. ID. NO. 32) may be substituted with one or more amino acids, such as alanine or serine. Alternatively, the cysteine residue at position 5 could be deleted.
An Fc fragment may be prepared by deletion of one or more amino acids at any of positions 1, 2, 3, 4 and 5 as shown in Figure 1 (SEQ ID NO. 32) . In one embodiment, the amino acid residues at positions 1-5 inclusive are deleted. Substitutions at these positions can also be made and are with in the scope of this invention.
Fc variants may also be made which show reduced binding to Fc receptors which trigger effector functions such as antibody dependent cellular cytotoxicity (ADCC) and activation of complement. Such variants may include leucine at position 20 deleted or substituted with a glutamine residue, glutamate at position 103 deleted or substituted with an alanine residue, and lysines at positions 105 and 107 deleted or substituted with alanine residues (following the numbering as set forth in Figure 1) . One or more of such substitutions are contemplated.
In one embodiment, Fc variants will exhibit stronger binding to the FcRn receptor ("salvage receptor") and a longer circulating half-life compared to native Fc such as that shown in Figure 1. Example of such variants include amino acid substitutions at one or more of residues 33, 35-42, 59, 72, 75, 77, 95- 98, 101, 172-174, 215 and 220-223, wherein the substitution (s) confer tighter binding of an Fc variant to the FcRn receptor.
Other Fc variants include one or more tyrosine residues replaced with, for example, phenyalanine residues. In addition, other variant amino acid insertions, deletions and/or substitutions are also contemplated and are within the scope of the present invention. Examples include Fc variants disclosed in W096/32478 and WO97/34630 hereby incorporated by reference. Furthermore, alterations may be in the form of altered amino acids, such as peptidomimetics or D-amino acids.
The Fc protein may be also linked to the AGP- 1 proteins of the Fc-AGP-1 protein by "linker" moieties whether chemical or amino acids of varying lengths.
Such chemical linkers are well known in the art. Amino acid linker sequences can include but are not limited to:
(a) ala-ala-ala; (b) ala-ala-ala-ala;
(c) ala-ala-ala-ala-ala; ( d) gly-gly;
( e ) gly-giy-gly;
( f ) gly-gly-gly-gly-gly;
( g) gly-gly-gly-gly-gly-gly-gly; (h) gly-pro-gly;
(i) gly-gly-pro-gly-gly; and (j) any combination of subparts (a) through (i ) .
AGP-1 variants, fragments and derivatives are also provided by the invention and are generally as described hereinabove for Fc molecules, with the exception of the specific locations of the modified amino acid residues. In a preferred embodiment, AGP-1 is a soluble form of AGP-1 which is not membrane-bound and lacks a functional transmembrane domain. As an example, soluble AGP-1 may comprise an extracellular domain and lack sequences for cytoplasmic and transmembrane domains. The full-length human AGP-1 extracellular domain encompasses about residues 39-281 inclusive using the numbering system as set forth in Figure 2. Soluble human AGP-1 may also encompass fragments of a full-length extracellular domain which function to bind receptor or to induce apoptosis in an assay such as that described in Example 4 below. Soluble AGP-1 fragments comprise the amino acid sequence X-281 wherein X is any residue from 95 to 114 inclusive using the numbering system of as set forth in Figure 2. Other soluble AGP-1 fragments encompass residues 115-281, 116-281, 117-281, 118-281 and 119-281 inclusive. Variants and derivatives of the AGP-1 fragments described herein are also encompassed by the invention.
Nucleic acid molecules Nucleic acid molecules encoding Fc-AGP-1 proteins, or variants, fragments or derivatives thereof, are provided for by the invention. Nucleic acid molecules of the invention may be produced using site directed mutagenesis, PCR amplification, or other appropriate methods, where the primer (s) have the desired mutations. See Sambrook et al . (Molecular Cloning: A Laboratory Manual, Cold Springs Harbor Laboratory Press, Cold Springs Harbor, N.Y. (1989)), and Ausubel et al . (Current Protocols in Molecular
Biology, Wiley and Sons, N.Y. (1994)), for descriptions of mutagenesis techniques. Chemical synthesis using methods described by Engels et al . (Angew. Chem. Intl. Ed. 28, 716-734 (1989)), may also be used to prepare such variants. Other methods known to the skilled artisan may be used as well .
In certain embodiments, nucleic acid variants contain codons which have been altered for optimal expression of an Fc-AGP-1 polypeptide in a given host cell. Particular codon alterations will depend upon the Fc-AGP-1 polypeptide (s) and host cell(s) selected for expression. Such "codon optimization" can be carried out by a variety of methods, for example, by selecting codons which are preferred for use in highly expressed genes in a given host cell. Computer algorithms which incorporate codon frequency tables such as "Ecohigh. Cod" for codon preference of highly expressed bacterial genes may be used and are provided by the University of Wisconsin Package Version 9.0, Genetics Computer Group, Madison, WI . Other useful codon frequency tables include "Celegans_high.cod" , "Celegans_low.cod" , "Drosophila_high. cod" , "Human_high. cod" , "Maize_high. cod" , and "Yeast_high. cod" . In other embodiments, nucleic acid molecules encode Fc-AGP-1 variants with conservative amino acid substitutions as defined hereinabove. Also provided for are Fc or AGP-1 variants comprising an addition and/or a deletion of one or more N-linked or O-linked glycosylation sites, or Fc or AGP-1 polypeptide fragments as described above. In addition, nucleic acid molecules may encode any combination of Fc and/or AGP-1 variants, fragments, and fusion polypeptides described herein.
Vectors and Host cells
A nucleic acid molecule encoding an Fc-AGP-1 fusion protein is inserted into an appropriate expression vector using standard ligation techniques. The vector is typically selected to be functional in the particular host cell employed (i.e., the vector is compatible with the host cell machinery such that amplification of the gene and/or expression of the gene can occur) . A nucleic acid molecule encoding an FcAGP-1 protein may be amplified/expressed in prokaryotic, yeast, insect (baculovirus systems) and/or eukaryotic host cells. Selection of the host cell will depend in part on whether an Fc-AGP-1 protein is to be post-translationally modified (e.g, glycosylated and/or phosphorylated) . If so, yeast, insect, or mammalian host cells are preferable.
Typically, expression vectors used in any of the host cells will contain sequences for plasmid maintenance and for cloning and expression of exogenous nucleotide sequences. such sequences, collectively referred to as "flanking sequences" in certain embodiments will typically include one or more of the following nucleotides: a promoter, one or more enhancer sequences, an origin of replication, a transcriptional termination sequence, a complete intron sequence containing a donor and acceptor splice site, a leader sequence for secretion, a ribosome binding site, a polyadenylation sequence, a polylinker region for inserting the nucleic acid encoding the polypeptide to be expressed, and a selectable marker element.
Flanking sequences may be homologous (i.e., from the same species and/or strain as the host cell) , heterologous (i.e, from a species other than the host cell species or strain), hybrid (i.e., a combination of flanking sequences from more than one source) , or synthetic, or native sequences which normally function to regulate AGP-1 and/or Fc protein expression. As such, the source of flanking sequences may be any prokaryotic or eukaryotic organism, any vertebrate or invertebrate organism, or any plant, provided that the flanking sequences is functional in, and can be activated by, the host cell machinery.
A leader, or signal, sequence may be used to direct an Fc-AGP-1 polypeptide out of the host cell. Typically, the signal sequence is positioned in the coding region of the Fc-AGP-1 nucleic acid molecule, or directly at the 5' end of the Fc-AGP-1 polypeptide coding region. Many signal sequences have been identified, and any of them that are functional in the selected host cell may be used in conjunction with nucleic acid sequences encoding Fc-AGP-1 proteins. Therefore, a signal sequence may be homologous
(naturally occurring) or heterologous to the AGP-1 or Fc gene or cDNA, Additionally, a signal sequence may be chemically synthesized using methods set forth above. In most cases, secretion of an Fc-AGP-1 polypeptide from the host cell via the presence of a signal peptide will result in the removal of the signal peptide from the fusion polypeptide.
The signal sequence may be a component of the vector, or it may be a part of Fc-AGP-1 DNA that is inserted into the vector. Native AGP-1 DNA encodes a signal sequence at the amino terminus of the protein that is cleaved during post-translational processing of the molecule to form the mature protein (see Figure 2) . Included within the scope of this invention are AGP-1 nucleotides with the native signal sequence as well as AGP-1 nucleotides wherein the native signal sequence is deleted and replaced with a heterologous signal sequence. A heterologous signal sequence selected should be one that is recognized and processed, i.e., cleaved by a signal peptidase, by the host cell. In one embodiment, a heterologous signal sequence is the OPG signal sequence as described in W097/23614. For prokaryotic host cells that do not recognize and process the native AGP-1 signal sequence, the signal sequence is substituted by a prokaryotic signal sequence selected, for example, from the group of the alkaline phosphatase, penicillinase, or heat-stable enterotoxin II leaders. For yeast secretion, the native AGP-1 signal sequence may be substituted by the yeast invertase, alpha factor, or acid phosphatase leaders. In mammalian cell expression the native signal sequence is satisfactory, although other mammalian signal sequences may be suitable.
Preferred vectors for practicing this invention are those which are compatible with bacterial, insect, and mammalian host cells. Such vectors include, inter alia , pCRII, pCR3 , and pcDNA3.1 (Invitrogen Company, San Diego, CA) , pBSII (Stratagene Company, La Jolla, CA) , pETl5b (Novagen, Madison, WI) , pGEX (Pharmacia Biotech, Piscataway, NJ) , pEGFP-N2 (Clontech, Palo Alto, CA) , pETL (BlueBacII; Invitrogen), pDSR-alpha (PCT Publication No. W090/14363) and pFastBacDual (Gibco/BRL, Grand Island, NY) .
Additional possible vectors include, but are not limited to, cosmids, plasmids or modified viruses, but the vector system must be compatible with the selected host cell. Such vectors include, but are not limited to plasmids such as Bluescript plasmid derivatives (a high copy number ColEl-based phagemid, Stratagene Cloning Systems Inc., La Jolla CA) , PCR cloning plasmids designed for cloning Taq-amplified PCR products (e.g., TOPO™ TA Cloning® Kit, PCR2.1 plasmid derivatives, Invitrogen, Carlsbad, CA) , and mammalian , yeast or virus vectors such as a baculovirus expression system (pBacPAK plasmid derivatives, Clontech, Palo Alto, CA) . The recombinant molecules can be introduced into host cells via transformation, transfection, infection, electroporation, or other known techniques. After the vector has been constructed and a nucleic acid molecule encoding an AGP-1 polypeptide has been inserted into the proper site of the vector, the completed vector may be inserted into a suitable host cell for amplification and/or polypeptide expression.
Host cells may be prokaryotic host cells (such as E. coli ) or eukaryotic host cells (such as a yeast cell, an insect cell, or a vertebrate cell) . The host cell, when cultured under appropriate conditions, synthesizes an AGP-1 polypeptide which can subsequently be collected from the culture medium (if the host cell secretes it into the medium) or directly from the host cell producing it (if it is not secreted) . Selection of an appropriate host cell will depend upon various factors, such as desired expression levels, polypeptide modifications that are desirable or necessary for activity, such as glycosylation or phosphorylation, and ease of folding into a biologically active molecule. Suitable host cells or cell lines may be mammalian cells, such as Chinese hamster ovary cells (CHO) (ATCC #CCL61 and Urlaub et al . , Proc. Natl. Acad. Sci. USA 77, 4216-4220 (1980)), human embryonic kidney (HEK) 293 or 293T cells (ATCC #CRL1573), or 3T3 cells (ATCC #CRL1658) . The selection of suitable mammalian host cells and methods for transformation, culture, amplification, screening and product production and purification are known in the art. Other suitable mammalian cell lines, are the monkey COS-1 and COS-7 cell lines (ATCC #CRL1651), and the CV-1 cell line (ATCC #CCL70) . Further exemplary mammalian host cells include primate cell lines and rodent cell lines, including transformed cell lines. Normal diploid cells, cell strains derived from in vi tro culture of primary tissue, as well as primary explants, are also suitable. Candidate cells may be genotypically deficient in the selection gene, or may contain a dominantly acting selection gene. Other suitable mammalian cell lines include but are not limited to, mouse neuroblastoma N2A cells, HeLa, mouse L-929 cells, 3T3 lines derived from Swiss, Balb-c or NIH mice, BHK or HaK hamster cell lines. Each of these cell lines is known by and available to those skilled in the art. Similarly useful as host cells suitable for the present invention are bacterial cells . For example, the various strains of E. coli (e.g., HB101, DH5a, DH10, and MC1061) are well-known as host cells in the field of biotechnology. Various strains of B . subtilis, Pseudomonaε spp . , other Bacillus spp. ,
Streptomyces spp . , and the like may also be employed in this method.
Many strains of yeast cells known to those skilled in the art are also available as host cells for expression of the polypeptides of the present invention. Preferred yeast cells include, for example, Saccharomyces cerivisae.
Additionally, where desired, insect cell systems may be utilized in the methods of the present invention. Such systems are described for example in Kitts et al . {Bio techniques , 14, 810-817 (1993)), Lucklow (Curr. Opin . Biotechnol . , 4, 564-572 (1993)) and Lucklow et al . { J. Virol . , 67., 4566-4579 (1993)). Preferred insect cells are Sf-9 and Hi5 (Invitrogen, Carlsbad, CA) . Transformation or transfection of an expression vector for an AGP-1 polypeptide into a selected host cell may be accomplished by well known methods including methods such as calcium chloride, electroporation, microinjection, lipofection or the DEAE-dextran method. The method selected will in part be a function of the type of host cell to be used. These methods and other suitable methods are well known to the skilled artisan, and are set forth, for example, in Sambrook et al . , supra .
Polypeptide Production
Host cells comprising an AGP-1 expression vector (i.e., transformed or transfected) may be cultured using standard media well known to the skilled artisan. The media will usually contain all nutrients necessary for the growth and survival of the cells . Suitable media for culturing E. coli cells are for example, Luria Broth (LB) and/or Terrific Broth (TB) . Suitable media for culturing eukaryotic cells are RPMI 1640, MEM, DMEM, all of which may be supplemented with serum and/or growth factors as required by the particular cell line being cultured. A suitable medium for insect cultures is Grace's medium supplemented with yeastolate, lactalbumin hydrolysate, and/or fetal calf serum as necessary (Gibco Life Technologies, Gaithersburg, MD) .
Typically, an antibiotic or other compound useful for selective growth of transfected or transformed cells is added as a supplement to the media. The compound to be used will be dictated by the selectable marker element present on the plasmid with which the host cell was transformed. For example, where the selectable marker element is kanamycin resistance, the compound added to the culture medium will be kanamycin; where the selectable marker element is ampicillin resistance, the compound added to the culture medium will be ampicillin.
The amount of an AGP-1 polypeptide produced by a host cell can be evaluated using standard methods known in the art. Such methods include, without limitation, Western blot analysis, SDS-polyacrylamide gel electrophoresis, non-denaturing gel electrophoresis, HPLC separation, immunoprecipitation, and/or activity assays such as DNA binding gel shift assays . Where an AGP-1 polypeptide is prepared without a tag attached, and no antibodies are available, other well known procedures for purification can be used. Such procedures include, without limitation, ion exchange chromatography, molecular sieve chromatography, HPLC, native gel electrophoresis in combination with gel elution, and preparative isoelectric focusing ("Isoprime" machine/technique, Hoefer Scientific) . In some cases, two or more of these techniques may be combined to achieve increased purity.
If an AGP-1 polypeptide is produced mtracellularly, the intracellular material (including inclusion bodies for gram-negative bacteria) can be extracted from the host cell using any standard technique known to the skilled artisan. For example, the host cells can be lysed to release the contents of the periplasm/cytoplasm by French press, homogenization, and/or sonication followed by centrifugation. If an AGP-1 polypeptide has formed inclusion bodies in the cytosol, the inclusion bodies can often bind to the inner and/or outer cellular membranes and thus will be found primarily in the pellet material after centrifugation. The pellet material can then be treated at pH extremes or with chaotropic agent such as a detergent, guanidine, guanidine derivatives, urea, or urea derivatives in the presence of a reducing agent such as dithiothreitol at alkaline pH or tris carboxyethyl phosphine at acid pH to release, break apart, and solubilize the inclusion bodies. An AGP-1 polypeptide in its now soluble form can then be analyzed using gel electrophoresis, immunoprecipitation or the like. If it is desired to isolate an AGP-1 polypeptide, isolation may be accomplished using standard methods such as those set forth below and in Marston et al . (Meth. Enz . , 182, 264-275 (1990)).
In some cases, an AGP-1 polypeptide may not be biologically active upon isolation. Various methods for "refolding" or converting the polypeptide to its tertiary structure and generating disulfide linkages, can be used to restore biological activity. Such methods include exposing the solubilized polypeptide to a pH usually above 7 and in the presence of a particular concentration of a chaotrope. The selection of chaotrope is very similar to the choices used for inclusion body solubilization, but usually the chaotrope is used at a lower concentration and is not necessarily the same as chaotropes used for the solubilization. In most cases the refolding/oxidation solution will also contain a reducing agent or the reducing agent plus its oxidized form in a specific ratio to generate a particular redox potential allowing for disulfide shuffling to occur in the formation of the protein's cysteine bridge (s). Some of the commonly used redox couples include cysteine/cystamine, glutathione (GSH) /dithiobis GSH, cupric chloride, dithiothreitol (DTT) /dithiane DTT, and 2- mercaptoethanol (bME) /dithio-b(ME) . In many instances, a cosolvent may be used or may be needed to increase the efficiency of the refolding and the more common reagents used for this purpose include glycerol, polyethylene glycol of various molecular weights, arginine and the like.
Derivatives
The present Fc-AGP-1 fusion proteins, and variants and fragments thereof, are derivatized by the attachment of one or more chemical moieties to an Fc-AGP-1 fusion protein moiety. These chemically modified derivatives may be further formulated for intraarterial, intraperitoneal, intramuscular subcutaneous, intravenous, oral, nasal, pulmonary, topical or other routes of administration as discussed below. Chemical modification of biologically active proteins has been found to provide additional advantages under certain circumstances, such as increasing the stability and circulation time of the therapeutic protein and decreasing immunogenicity. See, U.S. Patent No. 4,179,337. For a review, see Abuchowski et al . , in Enzymes as Drugs. (J. S. Holcerberg and J. Roberts, eds. pp. 367-383 (1981)); Francis et al . , supra .
The chemical moieties suitable for such derivatization may be selected from among various water soluble polymers . The polymer selected should be water soluble so that the protein to which it is attached does not precipitate in an aqueous environment, such as a physiological environment. Preferably, for therapeutic use of the end-product preparation, the polymer will be pharmaceutically acceptable. One skilled in the art will be able to select the desired polymer based on such considerations as whether the polymer/protein conjugate will be used therapeutically, and if so, the desired dosage, circulation time, resistance to proteolysis, and other considerations. For the present proteins, the effectiveness of the derivatization may be ascertained by administering the derivative, in the desired form (i.e., by osmotic pump, or, more preferably, by injection or infusion, or, further formulated for oral, pulmonary or nasal delivery, for example) , and observing biological effects as described herein. The water soluble polymer may be selected from the group consisting of, for example, polyethylene glycol, copolymers of ethylene glycol/propylene glycol, carboxymethylcellulose, dextran, polyvinyl alcohol, polyvinyl pyrolidone, poly-1, 3-dioxolane, poly-1, 3 , 6-trioxane, ethylene/maleic anhydride copolymer, polyaminoacids (either homopolymers or random copolymers) , and dextran or poly(n-vinyl pyrolidone) polyethylene glycol, propylene glycol homopolymers, polypropylene oxide/ethylene oxide co-polymers, polyoxyethylated polyols and polyvinyl alcohol . Polyethylene glycol propionaldenhyde may have advantages in manufacturing due to its stability in water. Also, succinate and styrene may also be used. Fc-AGP-1 fusion proteins, variants and fragments may also be derivatized by attaching polyaminoacids or branch point amino acids to the Fc or AGP-1 protein (or variant or fragment) moiety. For example, the polyaminoacid may be an additional carrier protein which serves to further increase the circulation half life of an Fc-AGP-1 fusion protein in addition to the advantages achieved via the Fc-AGP-1 fusion protein above. For the present therapeutic or cosmetic purpose of the present invention, such polyaminoacids should be those which have or do not create neutralizing antigenic response, or other adverse responses . Such polyaminoacids may be selected from the group consisting of serum album (such as human serum albumin), or other polyaminoacids, e.g. lysines. As indicated below, the location of attachment of the polyaminoacid may be at the N-terminus of the Fc-AGP-1 protein moiety, or C-terminus, or other places in between, and also may be connected by a chemical "linker" moiety to the Fc-AGP-1 protein.
The polymer may be of any molecular weight, and may be branched or unbranched. For polyethylene glycol, the preferred molecular weight is between about 2 kDa and about 100 kDa (the term "about" indicating that in preparations of polyethylene glycol, some molecules will weigh more, some less, than the stated molecular weight) for ease in handling and manufacturing. Other sizes may be used, depending on the desired therapeutic profile (e.g., the duration of sustained release desired, the effects, if any on biological activity, the ease in handling, the degree or lack of antigenicity and other known effects of the polyethylene glycol to a therapeutic protein or analog) .
The number of polymer molecules so attached may vary, and one skilled in the art will be able to ascertain the effect on function. One may mono-derivatize, or may provide for a di-, tri-, tetra- or some combination of derivatization, with the same or different chemical moieties (e.g., polymers, such as different weights of polyethylene glycols) . The proportion of polymer molecules to protein (or peptide) molecules will vary, as will their concentrations in the reaction mixture. In general, the optimum ratio (in terms of efficiency of reaction in that there is no excess unreacted protein or polymer) will be determined by factors such as the desired degree of derivatization (e.g., mono, di-, tri-, etc.), the molecular weight of the polymer selected, whether the polymer is branched or unbranched, and the reaction conditions.
The chemical moieties should be attached to the protein with consideration of effects on functional or antigenic domains of the protein. There are a number of attachment methods available to those skilled in the art. E. a. , EP 0401384 herein incorporated by reference (coupling PEG to G-CSF) , see also Malik et al . , Exp. Hematol. 20, 1028-1035 (1992) (reporting pegylation of GM-CSF using tresyl chloride) . For example, polyethylene glycol may be covalently bound through amino acid residues via a reactive group, such as, a free amino or carboxyl group. Reactive groups are those to which an activated polyethylene glycol molecule may be bound. The amino acid residues having a free amino group may include lysine residues and the N-terminal amino acid residue. Those having a free carboxyl group may include aspartic acid residues, glutamic acid residues, and the C-terminal amino acid residue. Sulfhydryl groups may also be used as a reactive group for attaching the polyethylene glycol molecule(s). Preferred for therapeutic purposes is attachment at an amino group, such as attachment at the N-terminus or lysine group. Attachment at residues important for receptor binding should be avoided if receptor binding is desired.
One may specifically desire N-terminally chemically modified Fc-AGP-1 fusion protein. Using polyethylene glycol as an illustration of the present compositions, one may select from a variety of polyethylene glycol molecules (by molecular weight, branching, etc.), the proportion of polyethylene glycol molecules to protein (or peptide) molecules in the reaction mix, the type of pegylation reaction to be performed, and the method of obtaining the selected N-terminally pegylated protein. The method of obtaining the N-terminally pegylated preparation (i.e., separating this moiety from other monopegylated moieties if necessary) may be by purification of the N-terminally pegylated material from a population of pegylated protein molecules. Selective N-terminal chemical modification may be accomplished by reductive alkylation which exploits differential reactivity of different types of primary amino groups (lysine versus the N-terminal) available for derivatization in a particular protein. Under the appropriate reaction conditions, substantially selective derivatization of the protein at the N-terminus with a carbonyl group containing polymer is achieved. For example, one may selectively N-terminally pegylate the protein by performing the reaction at a pH which allows one to take advantage of the pKa differences between the e-amino group of the lysine residues and that of the a-amino group of the N-terminal residue of the protein. By such selective derivatization, attachment of a water soluble polymer to a protein is controlled: the conjugation with the polymer takes place predominantly at the N-terminus of the protein and no significant modification of other reactive groups, such as the lysine side chain amino groups, occurs. Using reductive alkylation, the water soluble polymer may be of the type described above, and should have a single reactive aldehyde for coupling to the protein. Polyethylene glycol propionaldehyde, containing a single reactive aldehyde, may be used. An N-terminally monopegylated derivative is preferred for ease in production of a therapeutic. N-terminal pegylation ensures a homogenous product as characterization of the product is simplified relative to di-, tri- or other multi-pegylated products. The use of the above reductive alkylation process for preparation of an N-terminal product is preferred for ease in commercial manufacturing.
Uses of the Polypeptide AGP-1 fusion proteins may be used for the treatment of proliferative disorders wherein cells are undergoing excessive proliferation. For example, an AGP-1 fusion protein may be used as an anti-tumor to treat patients suffering from a variety of cancers, such as breast cancer, prostate cancer, lung cancer, and colon cancer. Viral infections and viral-induced diseases, such as hepatitis and AIDS, may also be treated with the proteins of the invention. Cardiovascular diseases such as arteriosclerosis which characterized by excessive proliferation of vascular smooth muscle cells may also be treated. AGP-1 fusion proteins may also be used to suppress T-lymphocyte mediated immune responses that occur in autoimmune disorders and in rejection of transplanted tissues It is desirable that that present proteins are expected to have prolonged in vivo half-lives and circulation times that will allow for lower dosages, less frequent administration, and enhanced efficacy compared to an unfused AGP-1 protein.
Pharmaceutical Compositions
The present invention also provides for pharmaceutical compositions of the Fc-AGP-1 fusion proteins, variants, fragments and derivatives. Such pharmaceutical compositions may be for administration for injection, or for oral, pulmonary, nasal, transdermal or other forms of administration. In general, comprehended by the invention are pharmaceutical compositions comprising effective amounts of protein or derivative products of the invention together with pharmaceutically acceptable diluents, preservatives, solubilizers, emulsifiers, adjuvants and/or carriers. An effective or a therapeutically effective amount of an FcAGP-1 fusion protein is an amount sufficient to induce apoptosis in a target cell, wherein apoptosis is evaluated by assays known in the art .
Such compositions include diluents of various buffer content (e.g., Tris-HCl, acetate, phosphate), pH and ionic strength; additives such as detergents and solubilizing agents (e.g., Tween 80, Polysorbate 80), anti-oxidants (e.g., ascorbic acid, sodium metabisulfite) , preservatives (e.g., Thimersol, benzyl alcohol) and bulking substances (e.g., lactose, mannitol) ; incorporation of the material into particulate preparations of polymeric compounds such as polylactic acid, polyglycolic acid, etc. or into liposomes. Hylauronic acid may also be used, and this may have the effect of promoting sustained duration in the circulation. Such compositions may influence the physical state, stability, rate of in vivo release, and rate of in vivo clearance of the present proteins and derivatives. See, e. a. . Remington's Pharmaceutical Sciences, 18th Ed. (1990, Mack Publishing Co., Easton, PA 18042) pages 1435-1712 which are herein incorporated by reference. The compositions may be prepared in liquid form, or may be in dried powder, such as lyophilized form. Implantable sustained release formulations are also contemplated, as are transdermal formulations.
Contemplated for use herein are oral solid dosage forms, which are described generally in Remington's Pharmaceutical Sciences, 18th Ed. 1990 (Mack Publishing Co. Easton PA 18042) at Chapter 89, which is herein incorporated by reference. Solid dosage forms include tablets, capsules, pills, troches or lozenges, cachets or pellets. Also, liposomal or proteinoid encapsulation may be used to formulate the present compositions (as, for example, proteinoid microspheres reported in U.S. Patent No. 4,925,673). Liposomal encapsulation may be used and the liposomes may be derivatized with various polymers (e.g., U.S. Patent No. 5,013,556). A description of possible solid dosage forms for the therapeutic is given by Marshall, K. In: Modern Pharmaceutics Edited by G. S. Banker and C. T. Rhodes Chapter 10, 1979, herein incorporated by reference. In general, the formulation will include the Fc-AGP-1 fusion protein (or analog or derivative) , and inert ingredients which allow for protection against the stomach environment, and release of the biologically active material in the intestine.
Also specifically contemplated are oral dosage forms of the above derivatized proteins. FcAGP-1 fusion protein may be chemically modified so that oral delivery of the derivative is efficacious. Generally, the chemical modification contemplated is the attachment of at least one moiety to the protein (or peptide) molecule itself, where said moiety permits (a) inhibition of proteolysis; and (b) uptake into the blood stream from the stomach or intestine. Also desired is the increase in overall stability of the protein and increase in circulation time in the body. Examples of such moieties include: Polyethylene glycol, copolymers of ethylene glycol and propylene glycol, carboxymethyl cellulose, dextran, polyvinyl alcohol, polyvinyl pyrrolidone and polyproline.
Abuchowski and Davis, Soluble Polymer-Enzyme Adducts . In: "Enzymes as Drugs", Hocenberg and RAGP-lertε, eds., Wiley-Interscience, New York, NY, (1981), pp 367-383; Newmark, et al . , J. Appl . Biochem. 4: 185-189 (1982). Other polymers that could be used are poly-1, 3- dioxolane and poly-1, 3 , 6-tioxocane. Preferred for pharmaceutical usage, as indicated above, are polyethylene glycol moieties.
To ensure resistance to degradation in the stomach following oral administration, a coating impermeable to at least pH 5.0 is essential. Examples of the more common inert ingredients that are used as enteric coatings for oral formulations are cellulose acetate trimellitate (CAT) , hydroxypropylmethylcellulose phthalate (HPMCP) , HPMCP 50, HPMCP 55, polyvinyl acetate phthalate (PVAP) ,
Eudragit L30D, Aquateric, cellulose acetate phthalate (CAP), Eudragit L, Eudragit S, and Shellac. These coatings may be used as mixed films.
The therapeutic can be included in the formulation as fine multiparticulates in the form of granules or pellets of particle size about 1 mm. The formulation of the material for capsule administration could also be as a powder, lightly compressed plugs or even as tablets . The therapeutic could be prepared by compression.
One may dilute or increase the volume of an FcAGP-1 composition with an inert material. These diluents could include carbohydrates, especially mannitol, α-lactose, anhydrous lactose, cellulose, sucrose, modified dextrans and starch. Certain inorganic salts may be also be used as fillers including calcium triphosphate, magnesium carbonate and sodium chloride. Some commercially available diluents are Fast-Flo, Emdex, STA-Rx 1500, Emcompress and Avicell.
Disintegrants may be included in the formulation of the therapeutic into a solid dosage form. Materials used as disintegrates include but are not limited to starch including the commercial disintegrant based on starch, Explotab. Sodium starch glycolate, Amberlite, sodium carboxymethylcellulose, ultramylopectin, sodium alginate, gelatin, orange peel, acid carboxymethyl cellulose, natural sponge and bentonite may all be used. Another form of the disintegrants are the insoluble cationic exchange resins. Powdered gums may be used as disintegrants and as binders and these can include powdered gums such as agar, Karaya or tragacanth. Alginic acid and its sodium salt are also useful as disintegrants.
Binders may be used to hold the therapeutic agent together to form a hard tablet and include materials from natural products such as acacia, tragacanth, starch and gelatin. Others include methyl cellulose (MC) , ethyl cellulose (EC) and carboxymethyl cellulose (CMC) . Polyvinyl pyrrolidone (PVP) and hydroxypropylmethyl cellulose (HPMC) could both be used in alcoholic solutions to granulate the therapeutic. An antifrictional agent may be included in the formulation of the therapeutic to prevent sticking during the formulation process . Lubricants may be used as a layer between the therapeutic and the die wall, and these can include but are not limited to; stearic acid including its magnesium and calcium salts, polytetrafluoroethylene (PTFE) , liquid paraffin, vegetable oils and waxes . Soluble lubricants may also be used such as sodium lauryl sulfate, magnesium lauryl sulfate, polyethylene glycol of various molecular weights, Carbowax 4000 and 6000.
Glidants that might improve the flow properties of the drug during formulation and to aid rearrangement during compression might be added. The glidants may include starch, talc, pyrogenic silica and hydrated silicoaluminate.
To aid dissolution of the therapeutic into the aqueous environment a surfactant might be added as a wetting agent. Surfactants may include anionic detergents such as sodium lauryl sulfate, dioctyl sodium sulfosuccinate and dioctyl sodium sulfonate. Cationic detergents might be used and could include benzalkonium chloride or benzethomium chloride. The list of potential nonionic detergents that could be included in the formulation as surfactants are lauromacrogol 400, polyoxyl 40 stearate, polyoxyethylene hydrogenated castor oil 10, 50 and 60, glycerol monostearate, polysorbate 40, 60, 65 and 80, sucrose fatty acid ester, methyl cellulose and carboxymethyl cellulose. These surfactants could be present in the formulation of the protein or derivative either alone or as a mixture in different ratios.
Additives which potentially enhance uptake of the protein (or derivative) are for instance the fatty acids oleic acid, linoleic acid and linolenic acid. Controlled release formulation may be desirable. The drug could be incorporated into an inert matrix which permits release by either diffusion or leaching mechanisms e . g. , gums. Slowly degenerating matrices may also be incorporated into the formulation, e.g., alginates, polysaccahrides . Another form of a controlled release of this therapeutic is by a method based on the Oros therapeutic system (Alza Corp.), i.e., the drug is enclosed in a semipermeable membrane which allows water to enter and push drug out through a single small opening due to osmotic effects. Some enteric coatings also have a delayed release effect.
Other coatings may be used for the formulation. These include a variety of sugars which could be applied in a coating pan. The therapeutic agent could also be given in a film coated tablet and the materials used in this instance are divided into 2 groups. The first are the nonenteric materials and include methyl cellulose, ethyl cellulose, hydroxyethyl cellulose, methylhydroxy-ethyl cellulose, hydroxypropyl cellulose, hydroxypropyl-methyl cellulose, sodium carboxy-methyl cellulose, providone and the polyethylene glycols . The second group consists of the enteric materials that are commonly esters of phthalic acid. A mix of materials might be used to provide the optimum film coating. Film coating may be carried out in a pan coater or in a fluidized bed or by compression coating.
Also contemplated herein is pulmonary delivery of the present protein (or derivatives thereof) . The protein (or derivative) is delivered to the lungs of a mammal while inhaling and traverses across the lung epithelial lining to the blood stream. (Other reports of this include Adjei et al . , Pharmaceutical Research 1 565-569 (1990); Adjei et al . , International Journal of Pharmaceutics ,6_3: 135-144 (1990) (leuprolide acetate); Braquet et al . , Journal of Cardiovascular Pharmacology 13 (suppl. 5): s.143-146 (1989) (endothelin-1) ;Hubbard et al . , Annals of Internal Medicine 3: 206-212 (1989) (αl-antitrypsin) ; Smith et al . , J. Clin. Invest. 84: 1145-1146
(1989) (αl-proteinase) ; Oswein et al . , "Aerosolization of Proteins", Proceedings of Symposium on Respiratory Drug Delivery II, Keystone, Colorado, March, 1990 (recombinant human growth hormone); Debs et al . , The
Journal of Immunology 140: 3482-3488 (1988) (interferon γ and tumor necrosis factor α) and U.S. Patent No. 5,284,656 (granulocyte colony stimulating factor).
Contemplated for use in the practice of this invention are a wide range of mechanical devices designed for pulmonary delivery of therapeutic products, including but not limited to nebulizers, metered dose inhalers, and powder inhalers, all of which are familiar to those skilled in the art. Some specific examples of commercially available devices suitable for the practice of this invention are the Ultravent nebulizer, manufactured by Mallinckrodt , Inc., St. Louis, Missouri; the Acorn II nebulizer, manufactured by Marquest Medical Products, Englewood, Colorado; the Ventolin metered dose inhaler, manufactured by Glaxo Inc., Research Triangle Park, North Carolina; and the Spinhaler powder inhaler, manufactured by Fisons Corp., Bedford, Massachusetts. All such devices require the use of formulations suitable for the dispensing of protein (or analog or derivative) . Typically, each formulation is specific to the type of device employed and may involve the use of an appropriate propellant material, in addition to diluents, adjuvants and/or carriers useful in therapy.
The protein (or derivative) should most advantageously be prepared in particulate form with an average particle size of less than 10 μm (or microns) , most preferably 0.5 to 5 μm, for most effective delivery to the distal lung.
Carriers include carbohydrates such as trehalose, mannitol, xylitol, sucrose, lactose, and sorbitol . Other ingredients for use in formulations may include DPPC, DOPE, DSPC and DOPC . Natural or synthetic surfactants may be used. Polyethylene glycol may be used (even apart from its use in derivatizing the protein or analog) . Dextrans, such as cyclodextran, may be used. Bile salts and other related enhancers may be used. Cellulose and cellulose derivatives may be used. Amino acids may be used, such as use in a buffer formulation.
Also, the use of liposomes, microcapsules or microspheres, inclusion complexes, or other types of carriers is contemplated. Nasal delivery of the protein (or analog or derivative) is also contemplated. Nasal delivery allows the passage of the protein to the blood stream directly after administering the therapeutic product to the nose, without the necessity for deposition of the product in the lung. Formulations for nasal delivery include those with dextran or cyclodextran. Delivery via transport across other mucus membranes is also contemplated.
Dosage
One skilled in the art will be able to ascertain effective dosages by administration and observing the desired therapeutic effect. Due to the modification of an AGP-1 protein by fusion to an Fc, the present invention provides unexpected protein protection from degradation, and increases circulation time and stability, when compared to a soluble AGP-1 protein. One skilled in the art, therefore, will be able to ascertain from these changes that an effective dosage may require lower doses or less frequent dosing.
Preferably, the formulation of the molecule will be such that between about .10 μg/kg and 10 mg/kg will yield the desired therapeutic effect. The frequency of administration may be readily determined by one skilled in the art. The effective dosages may be determined using diagnostic tools over time. For example, a diagnostic for measuring the amount of AGP-1 protein or Fc-AGP-1 fusion protein in the blood (or plasma or serum) may first be used to determine endogenous levels of protein. Such diagnostic tools may be in the form of an antibody assay, such as an antibody sandwich assay. The amount of endogenous AGP- 1 protein is quantified initially, and a baseline is determined. The therapeutic dosages are determined as the quantification of endogenous and exogenous AGP-1 protein or Fc-AGP-1 fusion protein (that is, protein, variant, fragment or derivative found within the body, either self-produced or administered) is continued over the course of therapy. The dosages may therefore vary over the course of therapy, with a relatively high dosage being used initially, until therapeutic benefit is seen, and lower dosages used to maintain the therapeutic benefits.
The following examples are offered to more fully illustrate the invention, but are not construed as limiting the scope thereof.
EXAMPLE 1
Production of AGP-1 Fusion Proteins
The fusion proteins Fc-huAGP-1 (95-281) , Fc- huAGP-1 (114-281), Fc-muAGP-1 (99-291) and Fc-muAGP-1 (120-291) were constructed by the following procedures.
The human IgGγl Fc region was PCR amplified with the following set of oligonucleotide primers:
5 ' TCT CCA AGC TTG AGC CCA AAT CTT GTG ACA AAA C 3 ' (SEQ ID NO. 1)
5' TCT CCC TTA AGT TTA CCC GGA GAC AGG GAG AG 3' (SEQ ID NO. 2)
PCR reaction was carried out in a volume of 50 μl with 1 unit of vent DNA polymerase (New England Biolabs) in 20 mM Tris-HCl pH8.8 , 10 mM KCl, 10 mM (NH4)2S04, 0.1% Triton-XlOO, 10 μM of each dNTP, lμM of each primer and 10 ng of RANKFc/pCEPP4 template (Hsu et al, Proc. Natl. Acad. Sci. USA 96, 3540-3545 (1999)). Reactions were performed in 94°C for 30 sec, 55°C for 30 sec, and 72°C for 1 min, for a total of 16 cycles. The PCR fragment was isolated by electrophoresis through 1% agarose and purification by the Geneclean procedure (Bio 101, Inc.). The PCR fragment creates a HindiII restriction site at 5' end and a Aflll restriction site at 3' end. The Hindlll-AfIII digested PCR fragment was then subcloned into the pCEP4 vector (Invitrogen) to create Fc/pCEP4.
A murine OPG signal peptide having the following amino acid sequence:
MNKWLCCALLVLLDIIEWTTQ (SEQ ID NO . 3) was created by annealing the following set of oligonucleotides :
5' CTA GCA CCA TGA ACA AGT GGC TGT GCT GCG CAC TCC TGG TGC TCC TGG ACA TCA TTG AAT GGA CAA CCC AGA 3' (SEQ ID NO. 4)
5' AGC TTC TGG GTT GTC CAT TCA ATG ATG TCC AGG AGC ACC AGG AGT GCG CAG CAC AGC CAC TTG TTC ATG GTG 3' (SEQ ID NO. 5)
The annealing was carried out by heating 10 μM of each oligonucleotide in a total volume of 20 μl at 94°C for 5 minutes, and then cooling gradually to room temperature. The annealed oligonucleotides, creating Nhel restriction site overhang at 5' end and HindiII restriction site overhang at 3' end, were cloned into Fc-pCEP4 vector inframe N-terminal to the human IgGγl Fc region to generate SO-Fc/pCEP4 vector. A linker which encodes two irrelevant amino acids (QK) was introduced between the OPG signal peptide and human IgGγl Fc. An extra irrelevant amino acid (K) was introduced by the HindiII site between the OPG signal peptide and human IgGγl Fc. The baculovirus expression system chosen to express nucleic acid sequences encoding Fc-AGP-1 fusion proteins is based on the BAC-TO-BACK expression system (Life Technologies, Gaithersburg, MD) with the following modifications.
The major capsid protein promoter sequence (GenBank Ace No. M22978) was PCR amplified from the Bac-N-Blueτr linear AcMNPV DNA purchased from Invitrogen (Carlsbad, CA) with the following primers:
5' ATT ATT GAT ATC GCA TGC TTG TTC GCC ATC GTG GAA TC (SEQ ID NO. 6) 5' AAT CCG GAA TAT TGT TGC CGT TAT AAA TAT GGA C (SEQ ID NO. 7)
The N-terminal coding sequence of the first 12 codons of the polyhedrin gene with the methionine start codon mutated from ATG to ATT and the following MCS were PCR amplified from the vector pBlueBac4 DNA (Invitrogen) with the following primers:
5' AAC GGC AAC AAT ATT CCG GAT TAT TCA TAC CGT CC (SEQ ID NO. 8)
5' ACT TCA AGG AGA ATT TCC (SEQ ID NO. 9)
The resulting two fragments share overlapping sequence and a second round of PCR was performed to fuse them together. The polyhedrin promoter and the multiple cloning sites (MCS) between the SnaBI and HindiII site present in pFastBacl was then replaced with the EcoRV and HindiII digested fragment containing capsid promoter and the new MCS. The resulting vector is named pFC. To further modify the MCS, the following pair of primers were annealed together and ligated to the pFC vector digested with Nhel and HindiII .
5' CTA GCT CTA GAC ATA TGG AAT TCC TGC AGC AGC TGG TAC CTC GAG GATCCA AGC TTG TCG AC (SEQ ID NO . 10)
5' AGC TAG TCG ACA AGC TTG GAT CCT CGA GGT ACC AGC TGC TGC AGG AAT TCC ATA TGT CTA GAG (SEQ ID NO. 11)
The resulting vector is named pFCl and is used as the donor vector for all baculovirus expression work described here.
To generate Fc-AGP-1 sequences in a baculovirus expression vector, the SO-Fc/pCEP4 was first used as template for PCR amplification of OPG signal peptide followed by human IgGγl Fc region with the following primers :
5 ' GGG CGT GCT AGC CAC CAT GAA CAA GTG GCT GTG CTG C 3 ' (SEQ ID NO. 12)
5' AGC TCC TTC TGC AGG TGG AAC AGC TGT TTA CCC GGA GAC AGG GAG 3' (SEQ ID NO. 13)
PCR reactions were carried out under conditions similar to those described above. The PCR fragment creates Nhel restriction site at 5' end and Pstl restriction site at 3' end, and was subsequently cloned into pFCl vector to create SO-Fc/pFCl.
Human AGP-1 (114-281) was PCR amplified from human AGP-1 and human IgGγl cDNA templates by the following overlapping set of primers to generate PCR fusion fragments:
5' CTC CGG GTA AAG TGA GAG AAA GAG GTC CTC AG 3' (SEQ ID NO. 14) 5 ' TTC TCT CAC TTT ACC CGG AGA CAG GGA G 3 ' (SEQ ID
NO. 15)
5' CTT CTT CCT CTA CAG CAA GC 3' (SEQ ID NO. 16)
5' GTT ATT GCT CAG CGG TGG CA 3' (SEQ ID NO. 17)
Human AGP-1 (95-281) was PCR amplified from human AGP-1 and human IgGγl cDNA templates by the following overlapping set of primers to generate PCR fusion fragments :
5 ' CCG GGT AAA ACT TCT GAG GAA ACC ATT TCT AC 3 ' (SEQ
ID NO. 18)
5 ' TCC TCA GAA GTT TTA CCC GGA GAC AGG GAG AG 3 ' (SEQ
ID NO. 19) 5' CTT CTT CCT CTA CAG CAA GC 3' (SEQ ID NO. 20)
5' GTT ATT GCT CAG CGG TGG CA 3' (SEQ ID NO. 21)
Murine AGP-1 (120-291) was PCR amplified from murine AGP-1 and human IgG gl cDNA templates by the following overlapping set of primers to generate PCR fusion fragments :
5' CCG GGT AAA GGT GGA AGA CCT CAG AAA GTG 3' (SEQ ID NO. 22) 5' GAG GTC TTC CAC CTT TAC CCG GAG ACA GGG AG 3' (SEQ ID NO. 23)
5' CTT CTT CCT CTA CAG CAA GC 3' (SEQ ID NO. 24) 5' GTT ATT GCT CAG CGG TGG CA 3' (SEQ ID NO. 25)
Murine AGP-1 (99-291) was PCR amplified from human AGP-1 and human IgG gl cDNA templates by the following overlapping set of primers to generate PCR fusion fragments :
5' CTC CGG GTA AAA CCT TTC AGG ACA CCA TTT CTA C 3' (SEQ ID NO. 26) 5 ' CCT GAA AGG TTT TAC CCG GAG ACA GGG AG 3 ' (SEQ ID NO. 27)
5' CTT CTT CCT CTA CAG CAA GC 3' (SEQ ID NO. 28) 5' GTT ATT GCT CAG CGG TGG CA 3' (SEQ ID NO. 29)
The PCR was carried out in similar conditions as described above. The resulting PCR fusion fragments were digested with Nsil and Xhol restriction enzymes and cloned in frame C-terminal to the human IgGgl Fc region in SO-Fc/pFCl at Nsil and Xhol sites. The final pFCl constructs expressing Fc-AGP-1 fusion proteins were subject to sequencing analysis.
Transformation of the donor plasmids, selection of the recombinant bacmids and isolation of the recombinant bacmid DNAs followed the protocols provided by the manufacturer (Life Technologies) . The recombinant bacmid DNAs described above were transfected into insect SF-9 cells by standard calcium chloride precipitation method to generate recombinant viruses using Grace's insect cell medium with supplements (Invitrogen) and 10 % fetal bovine serum. The viruses were subsequently amplified using the same cell line and medium. The final titer of the viruses was estimated to be around 107 (pfu/ml) based on previous experiences. To produce Fc-AGP-1 fusion proteins, shake flask expression was set up to infect insect Hi-Five cells at a density of 2 x 106 cells/ml grown in serum-free Ex- CELL405 medium from JRH Biosciences (Lenexa, KS) . The amount of virus preparation used was about 1/10 of the total cell culture volume. Time course samples were collected and analyzed by Western blot analysis in a pilot experiment and the harvest time was determined to be at 50-55 hours post- infection. Some product degradation was observed at later hours and when more cells ( > 10 %) started to show signs of death. The harvested conditioned medium was filter- sterilized immediately and kept at -80°C until purification step .
EXAMPLE 2
Purification of AGP-1 Fusion Proteins
Fc-AGP-1 fusion proteins were purified using Pharmacia Protein A Sepharose. The resin was equilibrated with TBS containing 20mM Tris pH7.0 and 150mM NaCl before applying the media. Complete protease inhibitor cocktail (Boehringer-Mannheim) was added to the media according to the manufacturer's instructions. The media was loaded, the column washed with TBS, and protein was eluted using Gentle Elution buffer (Pierce, Rockford, IL) . Protein containing fractions were pooled and submitted for in vitro analysis .
EXAMPLE 3 Production of AGP-1 Protein
PCR amplification employing the following primer pair and human AGP-1 cDNA template are used to generate various forms of human AGP-1.
5' ATT TGA TTC TAG AAG GAG GAA TAA CAT ATG GTT CGT GAA CGT GGT CCA CAG CGT GTA GCA 3 ' (SEQ ID NO . 30)
5' TAT CCG CGG ATC CTC GAG TTA GCC AAC TAA AAA GGC CCC GAA 3' (SEQ ID NO. 31)
One primer introduces unique Xbal and Ndel restrictions sites, an initiating Mmthionine codon, and optimized codons for the amino terminal protein of the gene. The other primer of the pair introduces a TAA stop codon, and a unique Xhol site following the carboxyl terminus of the gene. PCR and thermocycling was performed using standard recombinant DNA methodology. The PCR products were purified, restriction digested and inserted into the unique Xbal and Xhol sites of the vector pAMG21 (ATCC accession no. 98113), and transformed into the prototrophic E.coli strain 2596. The resulting construct pAMG21-huAGP-l (114-281) was engineered to encode human AGP-1 from amino acids 114-281 (see Figure 2) . After transformation, clones were selected, plasmid DNA was isolated and the sequence of the AGP-1 gene insert was confirmed. Human AGP-1 (114-281) was purified as follows.
40.5g of E. coli cell paste was homogenized in 20mM Tris, lOmM EDTA, pH7.5 with Complete protease inhibitors in a total volume of 250mL. Cells were lysed with two passes in a microfluidizer at70psi and then centrifuged at 14,000 rpm in a JA14 rotor for 60min.
The supernatant was filtered through 0.45μm and 0.22μm pore size filters. Aliquots were stored at -20°C. One lOmL aliquot was thawed and centrifuged. The supernatant was diluted 1:2 with 20mM Tris pH 7.5, adjusted to pH 7.5 then filtered through a 0.45μm filter. The sample was then applied to an 5mL SP Hi Trap column which had been equilibrated with the above buffer. The protein was eluted using a gradient from 0-0.5M NaCl in 20mM Tris pH 7.5. AGP-1 containing fractions were concentrated and then diafiltered into PBS pH6.2 using a centriprep 30. The concentrated fraction was estimated to be 90% pure by SDS-PAGE stained with Coomassie Blue.
EXAMPLE 4 Biological Activity of AGP-1 and AGP-1 Fusion Proteins Jurkat cells (ATCC No. ) were maintained in RPMI medium 1640 containing 10% fetal calf serum, 100 mg/ml penicillin G, and 100 mg/ml streptomycin (GIBCO) . To study apoptotsis induced by FcAGP-1 recombinant protein, 250 ml of Jurkat cells (5 x 105 cells/ml) were seeded to each well of a 96 well plate.
Cells were incubated in 5% C02 at 37°C with indicated concentrations of hu AGP-1 (114-281) , huFcAGP-1 (114- 281), or human IgG (Sigma) for 24 hours. Alamar Blue (Biosource Inc.) was added to each well in an amount equal to 10% of the culture volume. Cells were incubated for another 8 hours . Fluorescence was measured with excitation wavelength at 530nm and emission wavelength at 590nm in Bio-TEK FL500 Fluorescence Plate Reader (Bio-TEK Insturments Inc.). Each experiment was performed in duplicates . The results shown in Figure 7 indicate enhanced apoptosis activity of FcAGP-1 compared to soluble AGP-1.
While the present invention has been described in terms of preferred embodiments, it is understood that variations and modifications will occur to those skilled in the art. Therefore, it is intended that the appended claims cover all such equivalent variations which come within the scope of the invention as claimed.

Claims

WHAT IS CLAIMED IS:
1. A protein having a formula selected from the group consisting of: R. - R2 and R. - L - R2, wherein R. is a Fc protein, or variant or fragment thereof, R2 is an AGP-1 protein, or variant or fragment thereof, and L is a linker.
2. The protein according to claim 1, where in the Fc protein is selected from the group consisting of:
(a) the Fc amino acid sequences as set forth in Figure 1 ;
(b) the amino acid sequence of subpart (a) having a different amino acid substituted or deleted in one or more of the following positions (using the numbering according to Figure 1) :
(i) one or more cysteine residues;
(ii) one or more tyrosine residues; (iii) cysteine at position 5 deleted or substituted with an alanine;
(iv) leucine at position 20 deleted or substituted with glutamine;
(v) glutamic acid at position 103 deleted or substituted with an alanine;
(vi) lysine at position 105 deleted or substituted with an alanine;
(vii) lysine at position 107 deleted or substituted with an alanine; (viii) deletion or substitution of one or more of the amino acids at positions 1, 2, 3, 4, and 5;
(ix) one or more residues substituted or deleted to ablate the Fc receptor binding site; (x) one or more residues substituted or deleted to ablate the complement (Clq) binding site; and
(xi) a combination of subparts i-x; (c) the amino acid sequence of subparts (a) or (b) having a methionyl residue at the N-terminus;
(d) the Fc protein, or variant, fragment or derivative thereof, of any of subparts (a) through (c) comprised of a chemical moiety connected to the protein moiety;
(e) a derivative of subpart (d) wherein said chemical moiety is a water soluble polymer moiety;
(f) a derivative of subpart (e) wherein said water soluble polymer moiety is polyethylene glycol ; and
(g) a derivative of subpart (e) wherein said water soluble polymer moiety is attached at solely the N-terminus of said protein moiety.
3. The protein according to claim 1, wherein the AGP-1 protein, or variant, fragment or derivative thereof, is selected from the group consisting of: (a) the amino acid sequence X-281 wherein X is any residue from 95 to 114 inclusive as shown in Figure 2 (SEQ ID NO:34);
(b) the amino acid sequence of subpart (a) having a methionyl residue at the N-terminus. (c) the AGP-1 protein, or variant, fragment or derivative thereof, of any of subparts (a) and (b) comprised of a chemical moiety connected to the protein moiety;
(d) a derivative of subpart (c) wherein said chemical moiety is a water soluble polymer moiety; (e) a derivative of subpart (d) wherein said water soluble polymer moiety is polyethylene glycol ;
(f) A derivative of subpart (d) wherein said water soluble polymer moiety is a polyamino acid moiety; and
(g) a derivative of subpart (d) wherein said water soluble polymer moiety is attached at solely the N-terminus of said protein moiety.
4. The protein of claim 1 wherein the linker sequence is one or more amino acids selected from the group consisting of: Glycine, Asparagine, Serine, Threonine and Alanine.
5. The protein of claim 1 wherein the linker is selected from the group consisting of:
(a) ala-ala-ala;
(b) ala-ala-ala-ala; (c) ala-ala-ala-ala-ala;
(d) giy-giy;
(e) gly-gly-gly;
(f) gly-gly-gly-gly-gly;
(g) gly-gly-gly-gly-gly-gly-gly; (h) gly-pro-gly;
(i) gly-gly-pro-gly-gly;
(j) chemical moiety; and
(k) any combination of subparts (a) through ( j ) .
6. A fusion protein comprising a Fc protein, or variant, fragment or derivative thereof, fused to the N-terminus of an AGP-1 protein, or variant, fragment or derivative thereof.
7. A nucleic acid sequence encoding for a protein having the formula selected from the group consisting of: R. - R2 and R. - L - R2, wherein R. is a Fc protein, or variant or fragment thereof, R2 is an AGP-1 protein, or variant or fragment thereof, and L is a linker.
8. The nucleic acid sequence according to claim 7 encoding for a protein comprising an Fc protein, variant, fragment or derivative portion selected from the group consisting of:
(a) the Fc amino acid sequences as set forth in Figure 1 (SEQ ID NO: 32);
(b) the amino acid sequence of subpart (a) having a different amino acid substituted or deleted in one or more of the following positions (using the numbering according to Figure 1) :
(i) one or more cysteine residues;
(ii) one or more tyrosine residues; (iii) cysteine at position 5 deleted or substituted with an alanine;
(iv) leucine at position 20 deleted or substituted with glutamine;
(v) glutamic acid at position 103 deleted or substituted with an alanine;
(vi) lysine at position 105 deleted or substituted with an alanine;
(vii) lysine at position 107 deleted or substituted with an alanine; (viii) deletion or substitution of one or more of the amino acids at positions 1, 2, 3, 4, and 5;
(ix) one or more residues substituted or deleted to ablate the Fc receptor binding site; (x) one or more residues substituted or deleted to ablate the complement (Clq) binding site; and
(xi) a combination of subparts i-x; (c) the amino acid sequence of subparts (a) or (b) having a methionyl residue at the N-terminus;
(d) the Fc protein, or variant, fragment or derivative thereof, of any of subparts (a) through (c) comprised of a chemical moiety connected to the protein moiety;
(e) a derivative of subpart (d) wherein said chemical moiety is a water soluble polymer moiety;
(f) a derivative of subpart (e) wherein said water soluble polymer moiety is polyethylene glycol ; and
(g) a derivative of subpart (e) wherein said water soluble polymer moiety is attached at solely the N-terminus of said protein moiety.
9. The nucleic acid sequence according to claim 7 encoding for a protein comprising an AGP-1 protein, variant, fragment or derivative portion selected from the group consisting of: (a) the amino acid sequence X-281 wherein X is any residue from 95 to 114 inclusive as shown in Figure 2 (SEQ ID NO: 34);
(b) the amino acid sequence of subpart (a) having a methionyl residue at the N-terminus. (c) the AGP-1 protein, or variant, fragment or derivative thereof, of any of subparts (a) and (b) comprised of a chemical moiety connected to the protein moiety;
(d) a derivative of subpart (c) wherein said chemical moiety is a water soluble polymer moiety; (e) a derivative of subpart (d) wherein said water soluble polymer moiety is polyethylene glycol ;
(f) A derivative of subpart (d) wherein said water soluble polymer moiety is a polyamino acid moiety; and
(g) a derivative of subpart (d) wherein said water soluble polymer moiety is attached at solely the N-terminus of said protein moiety.
10. The nucleic acid sequence of claim 7 encoding for a protein with a linker sequence of one or more amino acids selected from the group consisting of: Gly, Asn, Ser, Thr and Ala.
11. The nucleic acid sequence of claim 7 encoding for a protein with a linker selected from the group consisting of:
(a) ala, ala, ala; (b) ala-ala-ala-ala,-
(c) ala-ala-ala-ala-ala;
(d) gly-gly;
(e) gly-giy-gly;
(f) gly-gly-gly-gly-gly; (g) gly-gly-gly-gly-gly-gly-gly;
(h) gly-pro-gly;
(i) gly-gly-pro-gly-gly;
(j) a chemical moiety; and
(k) any combination of subparts (a) through ( j ) .
12. A nucleic acid sequence encoding for a fusion protein having a Fc protein, or variant, fragment or derivative thereof, fused to the N-terminus of an AGP-1 protein, or a variant, fragment or derivative thereof.
13. A vector comprising a nucleic acid sequence according to any of Claims 7 to 12 inclusive.
14. A prokaryotic or eukaryotic host cell containing the vector of claim 13.
15. A process for producing a protein of claims 1 or 6 comprising the steps of culturing, under suitable conditions, the host cell of claim 14, and isolating the protein produced.
16. The process of claim 15 further comprising the step of purifying the protein produced.
17. A pharmaceutical composition comprising an effective amount of a protein according to claims 1 or 6, in a pharmaceutically acceptable diluent, adjuvant or carrier.
18. A method of inducing apoptosis in a tissue comprising administering a therapeutically effective amount of the protein according to Claim 1 or 6.
19. A method of treating of a disorder selected from the group consisting of proliferative disorder, an immune disorder or a viral-induced disorder comprising administering a therapeutically effective amount of the protein according to claims 1 or 6.
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