WO2001095230A3 - Method for predicting therapeutic agent resistance using neural networks - Google Patents

Method for predicting therapeutic agent resistance using neural networks Download PDF

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Publication number
WO2001095230A3
WO2001095230A3 PCT/EP2001/006360 EP0106360W WO0195230A3 WO 2001095230 A3 WO2001095230 A3 WO 2001095230A3 EP 0106360 W EP0106360 W EP 0106360W WO 0195230 A3 WO0195230 A3 WO 0195230A3
Authority
WO
WIPO (PCT)
Prior art keywords
therapeutic agent
disease
resistance
neural network
predicting
Prior art date
Application number
PCT/EP2001/006360
Other languages
French (fr)
Other versions
WO2001095230A2 (en
Inventor
Brendan Larder
Dechao Wang
Original Assignee
Virco Bvba
Brendan Larder
Dechao Wang
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US09/589,167 external-priority patent/US7058616B1/en
Application filed by Virco Bvba, Brendan Larder, Dechao Wang filed Critical Virco Bvba
Priority to AU67520/01A priority Critical patent/AU785353B2/en
Priority to CA2415832A priority patent/CA2415832C/en
Priority to US10/297,338 priority patent/US20030190603A1/en
Priority to EP01945251A priority patent/EP1352356B1/en
Priority to DE60140211T priority patent/DE60140211D1/en
Priority to AT01945251T priority patent/ATE445883T1/en
Priority to JP2002502695A priority patent/JP4726177B2/en
Publication of WO2001095230A2 publication Critical patent/WO2001095230A2/en
Publication of WO2001095230A3 publication Critical patent/WO2001095230A3/en

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    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20Supervised data analysis
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16HHEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H20/00ICT specially adapted for therapies or health-improving plans, e.g. for handling prescriptions, for steering therapy or for monitoring patient compliance
    • G16H20/10ICT specially adapted for therapies or health-improving plans, e.g. for handling prescriptions, for steering therapy or for monitoring patient compliance relating to drugs or medications, e.g. for ensuring correct administration to patients
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16HHEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H70/00ICT specially adapted for the handling or processing of medical references
    • G16H70/20ICT specially adapted for the handling or processing of medical references relating to practices or guidelines
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

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  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Epidemiology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Chemical & Material Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Biophysics (AREA)
  • Public Health (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Data Mining & Analysis (AREA)
  • Primary Health Care (AREA)
  • Bioethics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Evolutionary Computation (AREA)
  • Databases & Information Systems (AREA)
  • Software Systems (AREA)
  • Artificial Intelligence (AREA)
  • Medicinal Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Measurement And Recording Of Electrical Phenomena And Electrical Characteristics Of The Living Body (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Electrotherapy Devices (AREA)
  • Investigating Or Analysing Biological Materials (AREA)

Abstract

A method and system for predicting the resistance of a disease to a therapeutic agent is provided. Further provided is a method and system for designing a therapeutic treatment agent for a patient afflicted with a disease. Specifically, the methods use a trained neural network to interpret genotypic information obtained from the disease. The trained neural network is trained using a database of known or determined genotypic mutations that are correlated with phenotypic therapeutic agent resistance. The present invention also provides methods and systems for predicting the probability of a patient developing a genetic disease. A trained neural network for making such predictions is also provided. Also provided is a method and system for determining the genetic basis of therapeutic agent resistance.
PCT/EP2001/006360 2000-06-08 2001-06-01 Method for predicting therapeutic agent resistance using neural networks WO2001095230A2 (en)

Priority Applications (7)

Application Number Priority Date Filing Date Title
AU67520/01A AU785353B2 (en) 2000-06-08 2001-06-01 Method and system for predicting therapeutic agent resistance and for defining the genetic basis of drug resistance using neural networks
CA2415832A CA2415832C (en) 2000-06-08 2001-06-01 Method and system for predicting therapeutic agent resistance and for defining the genetic basis of drug resistance using neural networks
US10/297,338 US20030190603A1 (en) 2000-06-08 2001-06-01 Method and system for predicting therapeutic agent resistance and for defining the genetic basis of drug resistance using neural networks
EP01945251A EP1352356B1 (en) 2000-06-08 2001-06-01 Method for predicting therapeutic agent resistance using neural networks
DE60140211T DE60140211D1 (en) 2000-06-08 2001-06-01 PROCEDURE FOR RESISTANCE TO A THERAPEUTIC AGENCY PREDICTED BY NEURONAL NETWORKS
AT01945251T ATE445883T1 (en) 2000-06-08 2001-06-01 METHOD FOR PREDICTING RESISTANCE TO A THERAPEUTIC AGENT USING NEURONAL NETWORKS
JP2002502695A JP4726177B2 (en) 2000-06-08 2001-06-01 Method and system for predicting therapeutic drug resistance using neural networks and defining the genetic basis of drug resistance

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
US09/589,167 2000-06-08
US09/589,167 US7058616B1 (en) 2000-06-08 2000-06-08 Method and system for predicting resistance of a disease to a therapeutic agent using a neural network
US24184400P 2000-10-20 2000-10-20
US24180100P 2000-10-20 2000-10-20
US60/241,801 2000-10-20
US60/241,844 2000-10-20

Publications (2)

Publication Number Publication Date
WO2001095230A2 WO2001095230A2 (en) 2001-12-13
WO2001095230A3 true WO2001095230A3 (en) 2003-08-21

Family

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Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/EP2001/006360 WO2001095230A2 (en) 2000-06-08 2001-06-01 Method for predicting therapeutic agent resistance using neural networks

Country Status (9)

Country Link
US (1) US20030190603A1 (en)
EP (1) EP1352356B1 (en)
JP (1) JP4726177B2 (en)
AT (1) ATE445883T1 (en)
AU (1) AU785353B2 (en)
CA (1) CA2415832C (en)
DE (1) DE60140211D1 (en)
ES (1) ES2334011T3 (en)
WO (1) WO2001095230A2 (en)

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WO2004003817A1 (en) 2002-07-01 2004-01-08 Tibotec Pharmaceuticals Ltd. Mutational profiles in hiv-1 protease correlated with phenotypic drug resistance
US20050214744A1 (en) * 2002-07-01 2005-09-29 Hilde Azjin New mutational profiles in hiv-1 reverse transcriptase correlated with phenotypic drug resistance
US7473524B2 (en) 2002-07-01 2009-01-06 Hilde Azijn Mutational profiles in HIV-1 protease correlated with phenotypic drug resistance
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WO2012014082A2 (en) * 2010-07-28 2012-02-02 Purapharm International (Hk) Limited Artificial intelligence and methods for relating herbal ingredients with illnesses in traditional chinese medicine
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WO2022087540A1 (en) * 2020-10-23 2022-04-28 The Regents Of The University Of California Visible neural network framework
CN113077849B (en) * 2021-03-16 2023-03-31 华南农业大学 Escherichia coli beta-lactam acquired drug resistance phenotype prediction composite method
CN113966999A (en) * 2021-10-28 2022-01-25 中山大学 Sorafenib drug resistance prediction method and device and storage medium
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Also Published As

Publication number Publication date
JP2004523725A (en) 2004-08-05
WO2001095230A2 (en) 2001-12-13
CA2415832C (en) 2012-07-24
JP4726177B2 (en) 2011-07-20
AU785353B2 (en) 2007-02-01
US20030190603A1 (en) 2003-10-09
AU6752001A (en) 2001-12-17
ATE445883T1 (en) 2009-10-15
CA2415832A1 (en) 2001-12-13
EP1352356A2 (en) 2003-10-15
ES2334011T3 (en) 2010-03-04
DE60140211D1 (en) 2009-11-26
EP1352356B1 (en) 2009-10-14

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