WO2002050310A3 - Rolling circle amplification detection of rna and dna - Google Patents

Rolling circle amplification detection of rna and dna Download PDF

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Publication number
WO2002050310A3
WO2002050310A3 PCT/US2001/049780 US0149780W WO0250310A3 WO 2002050310 A3 WO2002050310 A3 WO 2002050310A3 US 0149780 W US0149780 W US 0149780W WO 0250310 A3 WO0250310 A3 WO 0250310A3
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WO
WIPO (PCT)
Prior art keywords
rolling circle
circle amplification
rna
dna
rca
Prior art date
Application number
PCT/US2001/049780
Other languages
French (fr)
Other versions
WO2002050310A2 (en
WO2002050310A9 (en
Inventor
Allen T Christian
Melissa S Pattee
Cristina M Attix
James D Tucker
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Univ California
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Publication date
Application filed by Univ California filed Critical Univ California
Priority to AU2002239679A priority Critical patent/AU2002239679A1/en
Publication of WO2002050310A2 publication Critical patent/WO2002050310A2/en
Publication of WO2002050310A9 publication Critical patent/WO2002050310A9/en
Publication of WO2002050310A3 publication Critical patent/WO2002050310A3/en

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

Rolling circle amplification (RCA) has been useful for detecting point mutations in isolated nucleic acids, but its application in cytological preparations has been problematic. By pretreating cells with a combination of restriction enzymes and exonucleases, we demonstrate RCA in solution and in situ to detect gene copy number and single base mutations. It can also detect and quantify transcribed RNA in individual cells, making it a versatile tool for cell-based assays.
PCT/US2001/049780 2000-12-20 2001-12-18 Rolling circle amplification detection of rna and dna WO2002050310A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2002239679A AU2002239679A1 (en) 2000-12-20 2001-12-18 Rolling circle amplification detection of rna and dna

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US25721600P 2000-12-20 2000-12-20
US60/257,216 2000-12-20

Publications (3)

Publication Number Publication Date
WO2002050310A2 WO2002050310A2 (en) 2002-06-27
WO2002050310A9 WO2002050310A9 (en) 2002-11-28
WO2002050310A3 true WO2002050310A3 (en) 2004-03-04

Family

ID=22975349

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/049780 WO2002050310A2 (en) 2000-12-20 2001-12-18 Rolling circle amplification detection of rna and dna

Country Status (3)

Country Link
US (1) US6783943B2 (en)
AU (1) AU2002239679A1 (en)
WO (1) WO2002050310A2 (en)

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ATE483032T1 (en) 2005-04-12 2010-10-15 Olink Ab METHOD FOR PRODUCING OLIGONUCLEOTIDES
CN101238221B (en) * 2005-04-12 2011-11-16 Novia公司名下的现场Rcp公司 Ring probe and its uses in identifying biomolecule
US7449297B2 (en) 2005-04-14 2008-11-11 Euclid Diagnostics Llc Methods of copying the methylation pattern of DNA during isothermal amplification and microarrays
WO2006122215A2 (en) * 2005-05-10 2006-11-16 State Of Oregon Acting By & Through The State Board Of Higher Education On Behalf Of The University Of Oregon Methods of mapping polymorphisms and polymorphism microarrays
JP5331476B2 (en) * 2005-06-15 2013-10-30 カリダ・ジェノミックス・インコーポレイテッド Single molecule array for genetic and chemical analysis
US7960104B2 (en) 2005-10-07 2011-06-14 Callida Genomics, Inc. Self-assembled single molecule arrays and uses thereof
US20070168197A1 (en) * 2006-01-18 2007-07-19 Nokia Corporation Audio coding
SG10201405158QA (en) * 2006-02-24 2014-10-30 Callida Genomics Inc High throughput genome sequencing on dna arrays
EP1994180A4 (en) 2006-02-24 2009-11-25 Callida Genomics Inc High throughput genome sequencing on dna arrays
GB0621361D0 (en) * 2006-10-26 2006-12-06 Fermentas Uab Use of DNA polymerases
US7910302B2 (en) 2006-10-27 2011-03-22 Complete Genomics, Inc. Efficient arrays of amplified polynucleotides
US20080221832A1 (en) * 2006-11-09 2008-09-11 Complete Genomics, Inc. Methods for computing positional base probabilities using experminentals base value distributions
US20090111705A1 (en) 2006-11-09 2009-04-30 Complete Genomics, Inc. Selection of dna adaptor orientation by hybrid capture
US7897344B2 (en) * 2007-11-06 2011-03-01 Complete Genomics, Inc. Methods and oligonucleotide designs for insertion of multiple adaptors into library constructs
US20090263872A1 (en) * 2008-01-23 2009-10-22 Complete Genomics Inc. Methods and compositions for preventing bias in amplification and sequencing reactions
US8518640B2 (en) * 2007-10-29 2013-08-27 Complete Genomics, Inc. Nucleic acid sequencing and process
US8298768B2 (en) * 2007-11-29 2012-10-30 Complete Genomics, Inc. Efficient shotgun sequencing methods
US8415099B2 (en) 2007-11-05 2013-04-09 Complete Genomics, Inc. Efficient base determination in sequencing reactions
WO2009061840A1 (en) * 2007-11-05 2009-05-14 Complete Genomics, Inc. Methods and oligonucleotide designs for insertion of multiple adaptors employing selective methylation
US8592150B2 (en) 2007-12-05 2013-11-26 Complete Genomics, Inc. Methods and compositions for long fragment read sequencing
WO2009097368A2 (en) 2008-01-28 2009-08-06 Complete Genomics, Inc. Methods and compositions for efficient base calling in sequencing reactions
WO2009132028A1 (en) * 2008-04-21 2009-10-29 Complete Genomics, Inc. Array structures for nucleic acid detection
US9524369B2 (en) 2009-06-15 2016-12-20 Complete Genomics, Inc. Processing and analysis of complex nucleic acid sequence data
BR112013020773B1 (en) * 2011-02-15 2023-01-24 Leica Biosystems Newcastle Limited METHOD FOR LOCALIZED IN SITU DETECTION OF RNA, METHOD FOR DETERMINING THE PRESENCE AND LOCATION OF A GENETIC SEQUENCE AND METHOD FOR IN SITU LOCATION AND/OR DETECTION OF A SPECIFIC RNA
EP2744916A4 (en) 2011-07-13 2015-06-17 Primeradx Inc Multimodal methods for simultaneous detection and quantification of multiple nucleic acids in a sample
US20130157259A1 (en) * 2011-12-15 2013-06-20 Samsung Electronics Co., Ltd. Method of amplifying dna from rna in sample and use thereof
US10208339B2 (en) * 2015-02-19 2019-02-19 Takara Bio Usa, Inc. Systems and methods for whole genome amplification
WO2018107054A1 (en) 2016-12-09 2018-06-14 Ultivue, Inc. Improved methods for multiplex imaging using labeled nucleic acid imaging agents
US20190382838A1 (en) * 2018-06-01 2019-12-19 The Trustees Of The University Of Pennsylvania Methods For Single-Molecule Fluorescence Amplification Of RNA
AU2019371382A1 (en) * 2018-10-31 2021-05-20 The Board Of Trustees Of The Leland Standford Junior University Methods and kits for detecting cells using oligonucleotide conjugated antibodies

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WO1997019193A2 (en) * 1995-11-21 1997-05-29 Yale University Unimolecular segment amplification and detection
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Title
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Also Published As

Publication number Publication date
AU2002239679A1 (en) 2002-07-01
WO2002050310A2 (en) 2002-06-27
US6783943B2 (en) 2004-08-31
WO2002050310A9 (en) 2002-11-28
US20020177142A1 (en) 2002-11-28

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