WO2002061390A8 - Detection of herpes simplex virus - Google Patents

Detection of herpes simplex virus

Info

Publication number
WO2002061390A8
WO2002061390A8 PCT/US2002/002820 US0202820W WO02061390A8 WO 2002061390 A8 WO2002061390 A8 WO 2002061390A8 US 0202820 W US0202820 W US 0202820W WO 02061390 A8 WO02061390 A8 WO 02061390A8
Authority
WO
WIPO (PCT)
Prior art keywords
hsv
herpes simplex
simplex virus
detection
primers
Prior art date
Application number
PCT/US2002/002820
Other languages
French (fr)
Other versions
WO2002061390A3 (en
WO2002061390A2 (en
Inventor
Thomas F Smith
Mark J Espy
Arlo Wold
James R Uhl
Original Assignee
Mayo Foundation
Thomas F Smith
Mark J Espy
Arlo Wold
James R Uhl
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Mayo Foundation, Thomas F Smith, Mark J Espy, Arlo Wold, James R Uhl filed Critical Mayo Foundation
Priority to EP02709256A priority Critical patent/EP1364063B1/en
Priority to DE60236068T priority patent/DE60236068D1/en
Priority to AU2002243751A priority patent/AU2002243751A1/en
Priority to AT02709256T priority patent/ATE465272T1/en
Publication of WO2002061390A2 publication Critical patent/WO2002061390A2/en
Publication of WO2002061390A3 publication Critical patent/WO2002061390A3/en
Publication of WO2002061390A8 publication Critical patent/WO2002061390A8/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
    • C12Q1/701—Specific hybridization probes
    • C12Q1/705—Specific hybridization probes for herpetoviridae, e.g. herpes simplex, varicella zoster
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6816—Hybridisation assays characterised by the detection means
    • C12Q1/6818—Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer

Abstract

The invention provides methods to detect herpes simplex virus (HSV) in biological samples and further to distinguish between HSV-1 and HSV-2. Primers and probes for the differential detection of HSV-1 and HSV-2 are provided by the invention. Articles of manufacture containing such primers and probes for detecting HSV are further provided by the invention.
PCT/US2002/002820 2001-01-31 2002-01-31 Detection of herpes simplex virus WO2002061390A2 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
EP02709256A EP1364063B1 (en) 2001-01-31 2002-01-31 Detection of herpes simplex virus
DE60236068T DE60236068D1 (en) 2001-01-31 2002-01-31 PROOF OF HERPEX SIMPLEX VIRUS
AU2002243751A AU2002243751A1 (en) 2001-01-31 2002-01-31 Detection of herpes simplex virus
AT02709256T ATE465272T1 (en) 2001-01-31 2002-01-31 DETECTION OF HERPEX SIMPLEX VIRUS

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US26537601P 2001-01-31 2001-01-31
US60/265,376 2001-01-31

Publications (3)

Publication Number Publication Date
WO2002061390A2 WO2002061390A2 (en) 2002-08-08
WO2002061390A3 WO2002061390A3 (en) 2003-02-13
WO2002061390A8 true WO2002061390A8 (en) 2003-07-31

Family

ID=23010177

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2002/002820 WO2002061390A2 (en) 2001-01-31 2002-01-31 Detection of herpes simplex virus

Country Status (7)

Country Link
US (3) US6958210B2 (en)
EP (1) EP1364063B1 (en)
AT (1) ATE465272T1 (en)
AU (1) AU2002243751A1 (en)
DE (1) DE60236068D1 (en)
ES (1) ES2344594T3 (en)
WO (1) WO2002061390A2 (en)

Families Citing this family (32)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7691571B2 (en) 2001-01-31 2010-04-06 Mayo Foundation For Medical Education And Research Detection of bordetella
ATE465272T1 (en) 2001-01-31 2010-05-15 Mayo Foundation DETECTION OF HERPEX SIMPLEX VIRUS
WO2004016219A2 (en) * 2002-08-14 2004-02-26 The Board Of Regents Of The University Of Texas System Clinical assays for the detection and typing of human herpesviruses
US7074598B2 (en) 2002-09-25 2006-07-11 Mayo Foundation For Medical Education And Research Detection of vancomycin-resistant enterococcus spp.
US7365176B2 (en) 2002-09-26 2008-04-29 Mayo Foundation For Medical Education And Research Detection of Epstein-Barr virus
US7074599B2 (en) 2002-09-27 2006-07-11 Mayo Foundation For Medical Education And Research Detection of mecA-containing Staphylococcus spp.
US20040191776A1 (en) * 2003-03-21 2004-09-30 Pei-Jer Chen Method for genotyping and quantifying Hepatitis B Virus
US7427475B2 (en) 2003-11-18 2008-09-23 Mayo Foundation For Medical Education And Research Detection of group B streptococcus
US8030032B2 (en) 2004-10-07 2011-10-04 Medical Diagnostic Lab, LLC Methods and compositions related thereto for detecting and identifying distinct species of nucleic acids from causative agents
EP1659187A1 (en) * 2004-11-18 2006-05-24 bioMerieux B.V. Nucleic acid sequences that can be used as primers and probes in the amplification and detection of HSV DNA and method for the amplification and detection of HSV DNA using a transcription based amplification
US20060252032A1 (en) * 2005-01-28 2006-11-09 Third Wave Technologies, Inc. Detection of human herpesviruses
US20070122344A1 (en) 2005-09-02 2007-05-31 University Of Rochester Medical Center Office Of Technology Transfer Intraoperative determination of nerve location
RU2348695C2 (en) 2006-05-23 2009-03-10 Закрытое акционерное общество "Молекулярно-медицинские технологии" Differentiating and specific oligonucleotids for dna sequence identification for infection agents in biological materials, method of species identification of infection agents, biochip and method implementation kit
US20080161744A1 (en) 2006-09-07 2008-07-03 University Of Rochester Medical Center Pre-And Intra-Operative Localization of Penile Sentinel Nodes
US8535888B2 (en) * 2006-12-29 2013-09-17 Mayo Foundation For Medical Education And Research Compositions and methods for detecting methicillin-resistant S. aureus
KR101530943B1 (en) 2007-04-04 2015-06-23 네트바이오, 인코포레이티드 Integrated nucleic acid analysis
US20090226889A1 (en) * 2008-01-14 2009-09-10 Chen Fan Methods and compositions for detecting cns viruses
US8406860B2 (en) 2008-01-25 2013-03-26 Novadaq Technologies Inc. Method for evaluating blush in myocardial tissue
US10219742B2 (en) 2008-04-14 2019-03-05 Novadaq Technologies ULC Locating and analyzing perforator flaps for plastic and reconstructive surgery
EP3372250B1 (en) 2008-05-02 2019-12-25 Novadaq Technologies ULC Methods for production and use of substance-loaded erythrocytes for observation and treatment of microvascular hemodynamics
JP2011520907A (en) 2008-05-14 2011-07-21 ノヴァダク テクノロジーズ インコーポレイテッド Imaging method and composition for neuroimaging comprising a fluorescent dye conjugated to a viral component
US10492671B2 (en) 2009-05-08 2019-12-03 Novadaq Technologies ULC Near infra red fluorescence imaging for visualization of blood vessels during endoscopic harvest
WO2010147654A2 (en) 2009-06-15 2010-12-23 Netbio Inc. Improved methods for forensic dna quantitation
WO2011133811A2 (en) 2010-04-21 2011-10-27 Gen-Probe Incorporated Compositions, methods and kits to detect herpes simplex virus nucleic acid
CA2835620C (en) 2011-05-12 2021-02-23 Netbio, Inc. Methods and compositions for rapid multiplex amplification of str loci
CA2914778A1 (en) 2012-06-21 2013-12-27 Novadaq Technologies Inc. Quantification and analysis of angiography and perfusion
US9982313B2 (en) 2012-08-17 2018-05-29 Roche Molecular Systems, Inc. Compositions and methods for detection of herpes simplex virus 1 and 2
CN103045760A (en) * 2012-12-14 2013-04-17 山东省眼科研究所 Primer set for detecting I-type herpes simplex virus and kit
EP3201607B1 (en) 2014-09-29 2020-12-30 Novadaq Technologies ULC Imaging a target fluorophore in a biological material in the presence of autofluorescence
CA2963450A1 (en) 2014-10-09 2016-04-14 Novadaq Technologies Inc. Quantification of absolute blood flow in tissue using fluorescence-mediated photoplethysmography
US20190376124A1 (en) * 2016-06-02 2019-12-12 Takena Technologies, Inc. Apparatus and method for specific detection and quantization of nucleic acid
CA3049922A1 (en) 2017-02-10 2018-08-16 Novadaq Technologies ULC Open-field handheld fluorescence imaging systems and methods

Family Cites Families (43)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4965188A (en) * 1986-08-22 1990-10-23 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences using a thermostable enzyme
US4683202A (en) * 1985-03-28 1987-07-28 Cetus Corporation Process for amplifying nucleic acid sequences
US4683195A (en) * 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
US4824776A (en) * 1985-07-25 1989-04-25 Molecular Biosystems, Inc. Method for increasing the sensitivity of nucleic acid hybridization assays
US4996143A (en) * 1985-12-23 1991-02-26 Syngene, Inc. Fluorescent stokes shift probes for polynucleotide hybridization
US4800159A (en) * 1986-02-07 1989-01-24 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences
US5541308A (en) 1986-11-24 1996-07-30 Gen-Probe Incorporated Nucleic acid probes for detection and/or quantitation of non-viral organisms
DE3681176D1 (en) 1986-12-01 1991-10-02 Molecular Biosystems Inc METHOD FOR INCREASING THE SENSITIVITY OF NUCLEIC ACID HYBRIDIZATION TESTS.
US5246924A (en) * 1987-09-03 1993-09-21 Sloan-Kettering Institute For Cancer Research Method for treating hepatitis B virus infections using 1-(2'-deoxy-2'-fluoro-beta-D-arabinofuranosyl)-5-ethyluracil
EP0338591A3 (en) 1988-04-21 1991-09-04 Microprobe Corporation Nucleic acid extraction method
DE68924916T2 (en) 1988-08-08 1996-05-15 Upjohn Co METHOD FOR ISOLATING THYMIDINE KINASE OF HERPESVIRUS-ENCODING DNA.
EP0434747B1 (en) 1988-09-13 1999-05-19 Merial RECOMBINANT VACCINES BASED ON THE gB-PROTEIN OF MAREK'S DISEASE VIRUS
US5035996A (en) * 1989-06-01 1991-07-30 Life Technologies, Inc. Process for controlling contamination of nucleic acid amplification reactions
US5683896A (en) * 1989-06-01 1997-11-04 Life Technologies, Inc. Process for controlling contamination of nucleic acid amplification reactions
US5049490A (en) * 1990-02-20 1991-09-17 Eastman Kodak Co. Quantitative determination of a DNA polymerase and a test kit useful in same
GB2252323B (en) 1991-02-01 1995-02-15 Secr Defence Virus detection method and oligonucleotides for use therein
JP3167138B2 (en) * 1991-02-25 2001-05-21 株式会社ヤトロン Type-specific detection of herpes simplex virus
JPH0549477A (en) 1991-08-05 1993-03-02 Wakunaga Pharmaceut Co Ltd Detection of bacteria of the genus staphylococcus
JP3509859B2 (en) * 1991-11-07 2004-03-22 ナノトロニクス，インコーポレイテッド Hybridization of chromophore and fluorophore conjugated polynucleotides to create donor-donor energy transfer systems
US6174668B1 (en) * 1993-05-14 2001-01-16 Johnson & Johnson Clinical Diagnostics, Inc. Diagnostic compositions, elements, methods and test kits for amplification and detection of two or more target DNA's using primers having matched melting temperatures
US5925517A (en) 1993-11-12 1999-07-20 The Public Health Research Institute Of The City Of New York, Inc. Detectably labeled dual conformation oligonucleotide probes, assays and kits
US5538848A (en) 1994-11-16 1996-07-23 Applied Biosystems Division, Perkin-Elmer Corp. Method for detecting nucleic acid amplification using self-quenching fluorescence probe
KR100230909B1 (en) * 1993-11-29 1999-12-01 다니엘 엘. 캐시앙 Method for extracting nucleic acids from a wide range of organisms
US5702895A (en) * 1995-01-19 1997-12-30 Wakunaga Seiyaku Kabushiki Kaisha Method and kit for detecting methicillin-resistant Staphylococcus aureus
US5569583A (en) * 1995-04-25 1996-10-29 Health Research Inc. Rapid and sensitive detection of cytomegalovirus
ES2215230T3 (en) 1996-06-04 2004-10-01 University Of Utah Research Foundation SYSTEM AND METHOD FOR CARRYING OUT AND SUPERVISING CHAIN POLYMERASE REACTIONS.
EP1179600B1 (en) 1996-06-04 2005-05-11 University Of Utah Research Foundation Monitoring hybridization during PCR
JP2001521394A (en) 1997-04-22 2001-11-06 ババリアン・ノルディック・リサーチ・インスティテュート・アクティーゼルスカブ TaqMan ™ upper TM ™ -PCR for detection of pathogenic E. coli strains
JP3785517B2 (en) * 1997-06-05 2006-06-14 東ソー株式会社 Nucleic acid melting temperature measurement method
CA2306443A1 (en) 1997-10-14 1999-04-22 Darwin Molecular Corporation Thymidine kinase mutants and fusion proteins having thymidine kinase and guanylate kinase activities
KR100718028B1 (en) 1998-03-04 2007-05-16 악조 노벨 엔.브이. Oligonucleotides for the amplification and detection of epstein barr virus ebv nucleic acid
US6140054A (en) * 1998-09-30 2000-10-31 University Of Utah Research Foundation Multiplex genotyping using fluorescent hybridization probes
EP1179092A2 (en) 1999-01-10 2002-02-13 Exact Sciences Corporation Methods of detecting colorectal disease by conduction an assay to detect a mutation in a bat-26 locus
US6162605A (en) 1999-04-12 2000-12-19 Becton Dickinson And Company Amplification and detection of shiga-like toxin I producing organisms
WO2001012803A2 (en) 1999-08-17 2001-02-22 Beth Israel Deaconess Medical Center, Inc. Methods and compositions for restoring antibiotic susceptibility in glycopeptide-resistant enterococcus
AU7636000A (en) 1999-09-28 2001-04-30 Infectio Diagnostic (I.D.I.) Inc. Highly conserved genes and their use to generate species- specific, genus-specific, family-specific, group-specific and universal nucleic acid probes and amplification primers to rapidly detect and identify algal, archaeal, bacterial fungal and parasitical microorganisms from clinical specimens for diagnosis
EP1160333A3 (en) 2000-05-29 2004-01-07 Tosoh Corporation Oligonucleotides and method for detection of mecA gene of methicillin-resistant staphylococcus aureus
US6849407B2 (en) 2000-08-31 2005-02-01 Mayo Foundation For Medical Education And Research Detection of varicella-zoster virus
CA2425303A1 (en) 2000-10-27 2002-05-02 John Telford Nucleic acids and proteins from streptococcus groups a & b
ATE465272T1 (en) 2001-01-31 2010-05-15 Mayo Foundation DETECTION OF HERPEX SIMPLEX VIRUS
US6790952B2 (en) * 2001-02-13 2004-09-14 Cincinnati Children's Hospital Research Foundation Quantitative epstein barr virus PCR rapid assay
WO2003068918A2 (en) 2002-02-11 2003-08-21 Auburn University High-sensitivity real-time polymerase chain reaction for detection of nucleic acids
US6593093B1 (en) 2002-02-20 2003-07-15 Mayo Foundation For Medical Education And Research Detection of group a Streptococcus

Also Published As

Publication number Publication date
US7667025B2 (en) 2010-02-23
US20100184018A1 (en) 2010-07-22
ES2344594T3 (en) 2010-09-01
US20020164586A1 (en) 2002-11-07
US6958210B2 (en) 2005-10-25
EP1364063B1 (en) 2010-04-21
DE60236068D1 (en) 2010-06-02
US7893241B2 (en) 2011-02-22
US20060019242A1 (en) 2006-01-26
EP1364063A4 (en) 2004-05-12
WO2002061390A3 (en) 2003-02-13
ATE465272T1 (en) 2010-05-15
AU2002243751A1 (en) 2002-08-12
WO2002061390A2 (en) 2002-08-08
EP1364063A2 (en) 2003-11-26

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