WO2006081583A3 - Methods and compositions for improving fidelity in a nucleic acid synthesis reaction - Google Patents
Methods and compositions for improving fidelity in a nucleic acid synthesis reaction Download PDFInfo
- Publication number
- WO2006081583A3 WO2006081583A3 PCT/US2006/004638 US2006004638W WO2006081583A3 WO 2006081583 A3 WO2006081583 A3 WO 2006081583A3 US 2006004638 W US2006004638 W US 2006004638W WO 2006081583 A3 WO2006081583 A3 WO 2006081583A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- compositions
- synthesis reaction
- methods
- nucleic acid
- acid synthesis
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/26—Preparation of nitrogen-containing carbohydrates
- C12P19/28—N-glycosides
- C12P19/30—Nucleotides
- C12P19/34—Polynucleotides, e.g. nucleic acids, oligoribonucleotides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
Abstract
The invention provides methods and compositions for improving the fidelity of a sequencing-by-synthesis reaction by using a nucleotide derivative that forms a hydrogen bond with a complementary nucleotide on a template, but fails to form a phosphodiester bond with the 3' hydroxyl group of a primer under conditions otherwise suitable for a polymerization reaction; thereby blocking incorporation of a mismatched nucleotide.
Priority Applications (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
AT06734692T ATE548466T1 (en) | 2005-01-28 | 2006-01-30 | METHODS AND COMPOSITIONS FOR IMPROVING THE ACCURACY OF A NUCLEIC ACID SYNTHESIS REACTION |
EP06734692A EP1848829B1 (en) | 2005-01-28 | 2006-01-30 | Methods and compositions for improving fidelity in a nucleic acid synthesis reaction |
CA002599477A CA2599477A1 (en) | 2005-01-28 | 2006-01-30 | Methods and compositions for improving fidelity in a nucleic acid synthesis reaction |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US11/046,448 | 2005-01-28 | ||
US11/046,448 US7482120B2 (en) | 2005-01-28 | 2005-01-28 | Methods and compositions for improving fidelity in a nucleic acid synthesis reaction |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2006081583A2 WO2006081583A2 (en) | 2006-08-03 |
WO2006081583A3 true WO2006081583A3 (en) | 2006-10-19 |
Family
ID=36582013
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2006/004638 WO2006081583A2 (en) | 2005-01-28 | 2006-01-30 | Methods and compositions for improving fidelity in a nucleic acid synthesis reaction |
Country Status (5)
Country | Link |
---|---|
US (1) | US7482120B2 (en) |
EP (1) | EP1848829B1 (en) |
AT (1) | ATE548466T1 (en) |
CA (1) | CA2599477A1 (en) |
WO (1) | WO2006081583A2 (en) |
Families Citing this family (124)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CA2281205A1 (en) * | 1997-02-12 | 1998-08-13 | Eugene Y. Chan | Methods and products for analyzing polymers |
CN101525660A (en) * | 2000-07-07 | 2009-09-09 | 维西根生物技术公司 | An instant sequencing methodology |
WO2002044425A2 (en) * | 2000-12-01 | 2002-06-06 | Visigen Biotechnologies, Inc. | Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity |
US7668697B2 (en) * | 2006-02-06 | 2010-02-23 | Andrei Volkov | Method for analyzing dynamic detectable events at the single molecule level |
US7833709B2 (en) | 2004-05-28 | 2010-11-16 | Wafergen, Inc. | Thermo-controllable chips for multiplex analyses |
US20080076189A1 (en) * | 2006-03-30 | 2008-03-27 | Visigen Biotechnologies, Inc. | Modified surfaces for the detection of biomolecules at the single molecule level |
US9598724B2 (en) | 2007-06-01 | 2017-03-21 | Ibis Biosciences, Inc. | Methods and compositions for multiple displacement amplification of nucleic acids |
US8252911B2 (en) | 2008-02-12 | 2012-08-28 | Pacific Biosciences Of California, Inc. | Compositions and methods for use in analytical reactions |
US20090226906A1 (en) * | 2008-03-05 | 2009-09-10 | Helicos Biosciences Corporation | Methods and compositions for reducing nucleotide impurities |
WO2010141390A2 (en) | 2009-06-05 | 2010-12-09 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
US9416409B2 (en) | 2009-07-31 | 2016-08-16 | Ibis Biosciences, Inc. | Capture primers and capture sequence linked solid supports for molecular diagnostic tests |
CN102625838B (en) * | 2009-08-14 | 2016-01-20 | 阿霹震中科技公司 | For generating sample that rRNA eliminates or for from the method for sample separation rRNA, composition and test kit |
EP2957641B1 (en) | 2009-10-15 | 2017-05-17 | Ibis Biosciences, Inc. | Multiple displacement amplification |
AU2011249913B2 (en) | 2010-05-06 | 2014-09-11 | Ibis Biosciences, Inc. | Integrated sample preparation systems and stabilized enzyme mixtures |
CN103069006A (en) | 2010-07-23 | 2013-04-24 | 艾索特里克斯遗传实验室有限责任公司 | Identification of differentially represented fetal or maternal genomic regions and uses thereof |
AU2011301935B2 (en) | 2010-09-16 | 2015-06-11 | Ibis Biosciences, Inc. | Stabilization of ozone-labile fluorescent dyes by thiourea |
CN105755545B (en) | 2010-12-27 | 2019-05-03 | 艾比斯生物科学公司 | The preparation method and composition of nucleic acid samples |
WO2013022778A1 (en) | 2011-08-05 | 2013-02-14 | Ibis Biosciences, Inc. | Nucleic acid sequencing by electrochemical detection |
WO2013063308A1 (en) | 2011-10-25 | 2013-05-02 | University Of Massachusetts | An enzymatic method to enrich for capped rna, kits for performing same, and compositions derived therefrom |
EP3269820A1 (en) | 2011-12-22 | 2018-01-17 | Ibis Biosciences, Inc. | Kit for the amplification of a sequence from a ribonucleic acid |
US9334491B2 (en) | 2011-12-22 | 2016-05-10 | Ibis Biosciences, Inc. | Systems and methods for isolating nucleic acids from cellular samples |
EP2794927B1 (en) | 2011-12-22 | 2017-04-12 | Ibis Biosciences, Inc. | Amplification primers and methods |
US10150993B2 (en) | 2011-12-22 | 2018-12-11 | Ibis Biosciences, Inc. | Macromolecule positioning by electrical potential |
US9803188B2 (en) | 2011-12-22 | 2017-10-31 | Ibis Biosciences, Inc. | Systems and methods for isolating nucleic acids |
WO2013102091A1 (en) | 2011-12-28 | 2013-07-04 | Ibis Biosciences, Inc. | Nucleic acid ligation systems and methods |
WO2013102081A2 (en) | 2011-12-29 | 2013-07-04 | Ibis Biosciences, Inc. | Macromolecule delivery to nanowells |
JP2015503923A (en) | 2012-01-09 | 2015-02-05 | オスロ ウニヴェルスィテーツスィーケフース ハーエフOslo Universitetssykehus Hf | Methods and biomarkers for the analysis of colorectal cancer |
WO2013106737A1 (en) | 2012-01-13 | 2013-07-18 | Data2Bio | Genotyping by next-generation sequencing |
EP2834370B1 (en) | 2012-04-03 | 2019-01-02 | The Regents Of The University Of Michigan | Biomarker associated with irritable bowel syndrome and crohn's disease |
ES2683707T3 (en) | 2012-05-02 | 2018-09-27 | Ibis Biosciences, Inc. | DNA sequencing |
US20150133310A1 (en) | 2012-05-02 | 2015-05-14 | Ibis Biosciences, Inc. | Nucleic acid sequencing systems and methods |
WO2014005076A2 (en) | 2012-06-29 | 2014-01-03 | The Regents Of The University Of Michigan | Methods and biomarkers for detection of kidney disorders |
ES2701750T3 (en) | 2012-10-16 | 2019-02-25 | Abbott Molecular Inc | Procedures for sequencing a nucleic acid |
US9701999B2 (en) | 2013-03-14 | 2017-07-11 | Abbott Molecular, Inc. | Multiplex methylation-specific amplification systems and methods |
EP2971154A4 (en) | 2013-03-14 | 2017-03-01 | Ibis Biosciences, Inc. | Nucleic acid control panels |
US9146248B2 (en) | 2013-03-14 | 2015-09-29 | Intelligent Bio-Systems, Inc. | Apparatus and methods for purging flow cells in nucleic acid sequencing instruments |
EP3533884A1 (en) | 2013-03-15 | 2019-09-04 | Ibis Biosciences, Inc. | Dna sequences to assess contamination in dna sequencing |
US9591268B2 (en) | 2013-03-15 | 2017-03-07 | Qiagen Waltham, Inc. | Flow cell alignment methods and systems |
CN105358709B (en) | 2013-03-15 | 2018-12-07 | 雅培分子公司 | System and method for detecting genome copy numbers variation |
EP3036359B1 (en) | 2013-08-19 | 2019-10-23 | Abbott Molecular Inc. | Next-generation sequencing libraries |
WO2015095355A2 (en) | 2013-12-17 | 2015-06-25 | The Brigham And Women's Hospital, Inc. | Detection of an antibody against a pathogen |
WO2015107430A2 (en) | 2014-01-16 | 2015-07-23 | Oslo Universitetssykehus Hf | Methods and biomarkers for detection and prognosis of cervical cancer |
US10760109B2 (en) | 2014-06-06 | 2020-09-01 | The Regents Of The University Of Michigan | Compositions and methods for characterizing and diagnosing periodontal disease |
WO2015200378A1 (en) | 2014-06-23 | 2015-12-30 | The General Hospital Corporation | Genomewide unbiased identification of dsbs evaluated by sequencing (guide-seq) |
CN114214314A (en) | 2014-06-24 | 2022-03-22 | 生物辐射实验室股份有限公司 | Digital PCR barcoding |
MX2017001134A (en) | 2014-07-24 | 2017-10-11 | Abbott Molecular Inc | Compositions and methods for the detection and analysis of mycobacterium tuberculosis. |
US10208339B2 (en) | 2015-02-19 | 2019-02-19 | Takara Bio Usa, Inc. | Systems and methods for whole genome amplification |
EP3822361A1 (en) | 2015-02-20 | 2021-05-19 | Takara Bio USA, Inc. | Method for rapid accurate dispensing, visualization and analysis of single cells |
JP2018518155A (en) | 2015-04-15 | 2018-07-12 | ザ ジェネラル ホスピタル コーポレイション | LNA-based mutant enrichment next generation sequencing assay |
US10392613B2 (en) | 2015-07-14 | 2019-08-27 | Abbott Molecular Inc. | Purification of nucleic acids using copper-titanium oxides |
US10526664B2 (en) | 2015-07-14 | 2020-01-07 | Abbott Molecular Inc. | Compositions and methods for identifying drug resistant tuberculosis |
US10077470B2 (en) | 2015-07-21 | 2018-09-18 | Omniome, Inc. | Nucleic acid sequencing methods and systems |
WO2017014762A1 (en) | 2015-07-21 | 2017-01-26 | Omniome, Inc. | Nucleic acid sequencing methods and systems |
AU2016319110B2 (en) | 2015-09-11 | 2022-01-27 | The General Hospital Corporation | Full interrogation of nuclease DSBs and sequencing (FIND-seq) |
JP2018529353A (en) | 2015-09-30 | 2018-10-11 | ザ ジェネラル ホスピタル コーポレイション | Comprehensive in vitro reporting of cleavage events by sequencing (CIRCLE-seq) |
CN108431223A (en) | 2016-01-08 | 2018-08-21 | 生物辐射实验室股份有限公司 | Multiple pearls under per drop resolution |
WO2017139260A1 (en) | 2016-02-08 | 2017-08-17 | RGENE, Inc. | Multiple ligase compositions, systems, and methods |
EP3430154B1 (en) | 2016-03-14 | 2020-11-11 | Rgene, Inc. | Hyper-thermostable lysine-mutant ssdna/rna ligases |
CN109072297B (en) | 2016-04-22 | 2022-09-13 | 加利福尼亚太平洋生物科学股份有限公司 | Nucleic acid sequencing methods and systems using enhanced nucleotide-specific ternary complex formation detection |
SG11201809522WA (en) | 2016-04-29 | 2018-11-29 | Omniome Inc | Method of nucleic acid sequence determination |
US10597643B2 (en) | 2016-04-29 | 2020-03-24 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent DNA binding |
US10294514B2 (en) | 2016-04-29 | 2019-05-21 | Omniome, Inc. | Sequencing method employing ternary complex destabilization to identify cognate nucleotides |
US11091795B2 (en) | 2016-07-11 | 2021-08-17 | Arizona Board Of Regents On Behalf Of The University Of Arizona | Compositions and methods for diagnosing and treating arrhythmias |
WO2018013558A1 (en) | 2016-07-12 | 2018-01-18 | Life Technologies Corporation | Compositions and methods for detecting nucleic acid regions |
CA3020629A1 (en) | 2016-07-21 | 2018-01-25 | Takara Bio Usa, Inc. | Multi-z imaging and dispensing with multi-well devices |
US10428378B2 (en) | 2016-08-15 | 2019-10-01 | Omniome, Inc. | Sequencing method for rapid identification and processing of cognate nucleotide pairs |
WO2018035134A1 (en) | 2016-08-15 | 2018-02-22 | Omniome, Inc. | Method and system for sequencing nucleic acids |
WO2018042251A1 (en) | 2016-08-29 | 2018-03-08 | Oslo Universitetssykehus Hf | Chip-seq assays |
EP3555290B1 (en) | 2016-12-19 | 2022-11-02 | Bio-Rad Laboratories, Inc. | Droplet tagging contiguity preserved tagmented dna |
AU2017386515B2 (en) | 2016-12-30 | 2021-08-19 | Pacific Biosciences Of California, Inc. | Method and system employing distinguishable polymerases for detecting ternary complexes and identifying cognate nucleotides |
EP3568490B1 (en) | 2017-01-10 | 2021-03-10 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent dna binding |
EP3565900B1 (en) | 2017-01-20 | 2021-04-07 | Omniome, Inc. | Genotyping by polymerase binding |
EP3571319A1 (en) | 2017-01-20 | 2019-11-27 | Omniome, Inc. | Process for cognate nucleotide detection in a nucleic acid sequencing workflow |
WO2018136117A1 (en) | 2017-01-20 | 2018-07-26 | Omniome, Inc. | Allele-specific capture of nucleic acids |
DK3354746T3 (en) | 2017-01-30 | 2019-09-02 | Gmi Gregor Mendel Inst Fuer Molekulare Pflanzenbiologie Gmbh | NEW SPIKE-IN NUCLEOTIDES FOR NORMALIZING SEQUENCE DATA |
US11492666B2 (en) | 2017-02-15 | 2022-11-08 | Pacific Biosciences Of California, Inc. | Distinguishing sequences by detecting polymerase dissociation |
US9951385B1 (en) | 2017-04-25 | 2018-04-24 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
US10161003B2 (en) | 2017-04-25 | 2018-12-25 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
WO2018227091A1 (en) | 2017-06-08 | 2018-12-13 | The Brigham And Women's Hospital, Inc. | Methods and compositions for identifying epitopes |
CN110770356A (en) | 2017-06-20 | 2020-02-07 | 生物辐射实验室股份有限公司 | MDA using bead oligonucleotides |
WO2019002265A1 (en) | 2017-06-26 | 2019-01-03 | Universität Für Bodenkultur Wien | Novel biomarkers for detecting senescent cells |
KR20200057024A (en) | 2017-09-20 | 2020-05-25 | 가던트 헬쓰, 인크. | Methods and systems for differentiating somatic and germline variants |
CA3079411C (en) | 2017-10-19 | 2023-12-05 | Omniome, Inc. | Simultaneous background reduction and complex stabilization in binding assay workflows |
EP4180534A1 (en) | 2017-11-02 | 2023-05-17 | Bio-Rad Laboratories, Inc. | Transposase-based genomic analysis |
EP4324962A2 (en) | 2018-01-31 | 2024-02-21 | Bio-Rad Laboratories, Inc. | Methods and compositions for deconvoluting partition barcodes |
US11512002B2 (en) | 2018-04-18 | 2022-11-29 | University Of Virginia Patent Foundation | Silica materials and methods of making thereof |
US10400272B1 (en) | 2018-04-26 | 2019-09-03 | Omniome, Inc. | Methods and compositions for stabilizing nucleic acid-nucleotide-polymerase complexes |
WO2019213619A1 (en) | 2018-05-04 | 2019-11-07 | Abbott Laboratories | Hbv diagnostic, prognostic, and therapeutic methods and products |
CA3101337A1 (en) | 2018-05-31 | 2019-12-05 | Omniome, Inc. | Increased signal to noise in nucleic acid sequencing |
US11180794B2 (en) | 2018-05-31 | 2021-11-23 | Omniome, Inc. | Methods and compositions for capping nucleic acids |
US20190385700A1 (en) | 2018-06-04 | 2019-12-19 | Guardant Health, Inc. | METHODS AND SYSTEMS FOR DETERMINING The CELLULAR ORIGIN OF CELL-FREE NUCLEIC ACIDS |
AU2019310041A1 (en) | 2018-07-23 | 2021-02-04 | Guardant Health, Inc. | Methods and systems for adjusting tumor mutational burden by tumor fraction and coverage |
AU2019312152A1 (en) | 2018-07-24 | 2021-02-18 | Pacific Biosciences Of California, Inc. | Serial formation of ternary complex species |
EP3841202B1 (en) | 2018-08-20 | 2023-10-04 | Bio-Rad Laboratories, Inc. | Nucleotide sequence generation by barcode bead-colocalization in partitions |
AU2019331907A1 (en) | 2018-08-30 | 2021-04-08 | Guardant Health, Inc. | Methods and systems for detecting contamination between samples |
CA3109539A1 (en) | 2018-08-31 | 2020-03-05 | Guardant Health, Inc. | Microsatellite instability detection in cell-free dna |
WO2020096691A2 (en) | 2018-09-04 | 2020-05-14 | Guardant Health, Inc. | Methods and systems for detecting allelic imbalance in cell-free nucleic acid samples |
DK3814533T3 (en) | 2018-09-20 | 2021-11-15 | Tamirna Gmbh | Micro-RNA signatures to predict liver dysfunction |
EP3874060A1 (en) | 2018-10-31 | 2021-09-08 | Guardant Health, Inc. | Methods, compositions and systems for calibrating epigenetic partitioning assays |
WO2020101795A1 (en) | 2018-11-15 | 2020-05-22 | Omniome, Inc. | Electronic detection of nucleic acid structure |
GB2578528B (en) | 2018-12-04 | 2021-02-24 | Omniome Inc | Mixed-phase fluids for nucleic acid sequencing and other analytical assays |
EP3899032A2 (en) | 2018-12-20 | 2021-10-27 | Omniome, Inc. | Temperature control for analysis of nucleic acids and other analytes |
CN113454218A (en) | 2018-12-20 | 2021-09-28 | 夸登特健康公司 | Methods, compositions, and systems for improved recovery of nucleic acid molecules |
WO2020160414A1 (en) | 2019-01-31 | 2020-08-06 | Guardant Health, Inc. | Compositions and methods for isolating cell-free dna |
US11499189B2 (en) | 2019-02-14 | 2022-11-15 | Pacific Biosciences Of California, Inc. | Mitigating adverse impacts of detection systems on nucleic acids and other biological analytes |
WO2020176659A1 (en) | 2019-02-27 | 2020-09-03 | Guardant Health, Inc. | Methods and systems for determining the cellular origin of cell-free dna |
EP3976822A1 (en) | 2019-05-31 | 2022-04-06 | Guardant Health, Inc. | Methods and systems for improving patient monitoring after surgery |
CN114599795A (en) | 2019-10-18 | 2022-06-07 | 加利福尼亚太平洋生物科学股份有限公司 | Methods and compositions for capping nucleic acids |
DK3812472T3 (en) | 2019-10-21 | 2023-02-20 | Univ Freiburg Albert Ludwigs | TRULY UNBIASED IN VITRO ASSAYS FOR PROFILING THE OFF-TARGET ACTIVITY OF ONE OR MORE TARGET-SPECIFIC PROGRAMMABLE NUCLEASES IN CELLS (ABNOBA-SEQ) |
CN114746560A (en) | 2019-11-26 | 2022-07-12 | 夸登特健康公司 | Methods, compositions, and systems for improved binding of methylated polynucleotides |
WO2021152586A1 (en) | 2020-01-30 | 2021-08-05 | Yeda Research And Development Co. Ltd. | Methods of analyzing microbiome, immunoglobulin profile and physiological state |
WO2021214766A1 (en) | 2020-04-21 | 2021-10-28 | Yeda Research And Development Co. Ltd. | Methods of diagnosing viral infections and vaccines thereto |
WO2021222828A1 (en) | 2020-04-30 | 2021-11-04 | Guardant Health, Inc. | Methods for sequence determination using partitioned nucleic acids |
WO2021224677A1 (en) | 2020-05-05 | 2021-11-11 | Akershus Universitetssykehus Hf | Compositions and methods for characterizing bowel cancer |
EP4146822A1 (en) | 2020-05-05 | 2023-03-15 | Pacific Biosciences of California, Inc. | Compositions and methods for modifying polymerase-nucleic acid complexes |
JP2023526252A (en) | 2020-05-14 | 2023-06-21 | ガーダント ヘルス, インコーポレイテッド | Detection of homologous recombination repair defects |
WO2023282916A1 (en) | 2021-07-09 | 2023-01-12 | Guardant Health, Inc. | Methods of detecting genomic rearrangements using cell free nucleic acids |
EP4189111A1 (en) | 2020-07-30 | 2023-06-07 | Guardant Health, Inc. | Methods for isolating cell-free dna |
EP4205126A1 (en) | 2020-08-25 | 2023-07-05 | Guardant Health, Inc. | Methods and systems for predicting an origin of a variant |
US20220154285A1 (en) | 2020-09-30 | 2022-05-19 | Guardant Health, Inc. | Analysis of methylated dna comprising methylation-sensitive or methylation-dependent restrictions |
EP4267757A1 (en) | 2020-12-23 | 2023-11-01 | Guardant Health, Inc. | Methods and systems for analyzing methylated polynucleotides |
KR20230156364A (en) | 2021-03-05 | 2023-11-14 | 가던트 헬쓰, 인크. | Methods and related aspects for analyzing molecular reactions |
US20220344004A1 (en) | 2021-03-09 | 2022-10-27 | Guardant Health, Inc. | Detecting the presence of a tumor based on off-target polynucleotide sequencing data |
US20230360725A1 (en) | 2022-05-09 | 2023-11-09 | Guardant Health, Inc. | Detecting degradation based on strand bias |
Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0481065A1 (en) * | 1990-05-07 | 1992-04-22 | Stanford Res Inst Int | Process for nucleic acid hybridization and amplification. |
US5976842A (en) * | 1997-10-30 | 1999-11-02 | Clontech Laboratories, Inc. | Methods and compositions for use in high fidelity polymerase chain reaction |
WO2002044425A2 (en) * | 2000-12-01 | 2002-06-06 | Visigen Biotechnologies, Inc. | Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity |
WO2004074503A2 (en) * | 2003-02-21 | 2004-09-02 | Hoser Mark J | Nucleic acid sequencing methods, kits and reagents |
Family Cites Families (158)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US3996345A (en) | 1974-08-12 | 1976-12-07 | Syva Company | Fluorescence quenching with immunological pairs in immunoassays |
JPS5941169B2 (en) | 1975-12-25 | 1984-10-05 | シチズン時計株式会社 | Elastomer |
US4153855A (en) | 1977-12-16 | 1979-05-08 | The United States Of America As Represented By The Secretary Of The Army | Method of making a plate having a pattern of microchannels |
US4351760A (en) | 1979-09-07 | 1982-09-28 | Syva Company | Novel alkyl substituted fluorescent compounds and polyamino acid conjugates |
US4344064A (en) | 1979-12-06 | 1982-08-10 | Western Electric Co., Inc. | Article carrying a distinctive mark |
US4711955A (en) | 1981-04-17 | 1987-12-08 | Yale University | Modified nucleotides and methods of preparing and using same |
US5260433A (en) | 1982-06-23 | 1993-11-09 | Enzo Diagnostics, Inc. | Saccharide specific binding system labeled nucleotides |
US4707237A (en) | 1982-09-09 | 1987-11-17 | Ciba Corning Diagnostics Corp. | System for identification of cells by electrophoresis |
US5198540A (en) * | 1982-10-28 | 1993-03-30 | Hubert Koster | Process for the preparation of oligonucleotides in solution |
US4994373A (en) * | 1983-01-27 | 1991-02-19 | Enzo Biochem, Inc. | Method and structures employing chemically-labelled polynucleotide probes |
DE3329892A1 (en) * | 1983-08-18 | 1985-03-07 | Köster, Hubert, Prof. Dr., 2000 Hamburg | METHOD FOR PRODUCING OLIGONUCLEOTIDES |
USRE34069E (en) | 1983-08-18 | 1992-09-15 | Biosyntech Gmbh | Process for the preparation of oligonucleotides |
US5360523A (en) | 1984-03-29 | 1994-11-01 | Li-Cor, Inc. | DNA sequencing |
US5258506A (en) | 1984-10-16 | 1993-11-02 | Chiron Corporation | Photolabile reagents for incorporation into oligonucleotide chains |
US4683195A (en) | 1986-01-30 | 1987-07-28 | Cetus Corporation | Process for amplifying, detecting, and/or-cloning nucleic acid sequences |
US4683202A (en) | 1985-03-28 | 1987-07-28 | Cetus Corporation | Process for amplifying nucleic acid sequences |
US4865968A (en) | 1985-04-01 | 1989-09-12 | The Salk Institute For Biological Studies | DNA sequencing |
US4739044A (en) * | 1985-06-13 | 1988-04-19 | Amgen | Method for derivitization of polynucleotides |
US4863849A (en) | 1985-07-18 | 1989-09-05 | New York Medical College | Automatable process for sequencing nucleotide |
US4757141A (en) | 1985-08-26 | 1988-07-12 | Applied Biosystems, Incorporated | Amino-derivatized phosphite and phosphate linking agents, phosphoramidite precursors, and useful conjugates thereof |
US5242797A (en) | 1986-03-21 | 1993-09-07 | Myron J. Block | Nucleic acid assay method |
US4811218A (en) * | 1986-06-02 | 1989-03-07 | Applied Biosystems, Inc. | Real time scanning electrophoresis apparatus for DNA sequencing |
US5242796A (en) | 1986-07-02 | 1993-09-07 | E. I. Du Pont De Nemours And Company | Method, system and reagents for DNA sequencing |
CA1340806C (en) | 1986-07-02 | 1999-11-02 | James Merrill Prober | Method, system and reagents for dna sequencing |
US4889818A (en) | 1986-08-22 | 1989-12-26 | Cetus Corporation | Purified thermostable enzyme |
US4994372A (en) * | 1987-01-14 | 1991-02-19 | President And Fellows Of Harvard College | DNA sequencing |
US5525464A (en) | 1987-04-01 | 1996-06-11 | Hyseq, Inc. | Method of sequencing by hybridization of oligonucleotide probes |
US6270961B1 (en) * | 1987-04-01 | 2001-08-07 | Hyseq, Inc. | Methods and apparatus for DNA sequencing and DNA identification |
US5202231A (en) * | 1987-04-01 | 1993-04-13 | Drmanac Radoje T | Method of sequencing of genomes by hybridization of oligonucleotide probes |
US4994368A (en) * | 1987-07-23 | 1991-02-19 | Syntex (U.S.A.) Inc. | Amplification method for polynucleotide assays |
US4942124A (en) | 1987-08-11 | 1990-07-17 | President And Fellows Of Harvard College | Multiplex sequencing |
US4793705A (en) | 1987-10-07 | 1988-12-27 | The United States Of America As Represented By The United States Department Of Energy | Single molecule tracking |
US4962037A (en) | 1987-10-07 | 1990-10-09 | United States Of America | Method for rapid base sequencing in DNA and RNA |
US4971903A (en) | 1988-03-25 | 1990-11-20 | Edward Hyman | Pyrophosphate-based method and apparatus for sequencing nucleic acids |
US4962020A (en) | 1988-07-12 | 1990-10-09 | President And Fellows Of Harvard College | DNA sequencing |
CH679555A5 (en) * | 1989-04-11 | 1992-03-13 | Westonbridge Int Ltd | |
US4979824A (en) | 1989-05-26 | 1990-12-25 | Board Of Trustees Of The Leland Stanford Junior University | High sensitivity fluorescent single particle and single molecule detection apparatus and method |
US6346413B1 (en) * | 1989-06-07 | 2002-02-12 | Affymetrix, Inc. | Polymer arrays |
US5800992A (en) * | 1989-06-07 | 1998-09-01 | Fodor; Stephen P.A. | Method of detecting nucleic acids |
US5143854A (en) | 1989-06-07 | 1992-09-01 | Affymax Technologies N.V. | Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof |
US5547839A (en) | 1989-06-07 | 1996-08-20 | Affymax Technologies N.V. | Sequencing of surface immobilized polymers utilizing microflourescence detection |
US5744101A (en) | 1989-06-07 | 1998-04-28 | Affymax Technologies N.V. | Photolabile nucleoside protecting groups |
US5424186A (en) | 1989-06-07 | 1995-06-13 | Affymax Technologies N.V. | Very large scale immobilized polymer synthesis |
DE69011631T2 (en) | 1989-06-14 | 1995-03-23 | Westonbridge Int Ltd | MICRO PUMP. |
US5112736A (en) | 1989-06-14 | 1992-05-12 | University Of Utah | Dna sequencing using fluorescence background electroblotting membrane |
US5108892A (en) * | 1989-08-03 | 1992-04-28 | Promega Corporation | Method of using a taq dna polymerase without 5'-3'-exonuclease activity |
US5096554A (en) * | 1989-08-07 | 1992-03-17 | Applied Biosystems, Inc. | Nucleic acid fractionation by counter-migration capillary electrophoresis |
US5302509A (en) * | 1989-08-14 | 1994-04-12 | Beckman Instruments, Inc. | Method for sequencing polynucleotides |
CA2028261C (en) | 1989-10-28 | 1995-01-17 | Won Suck Yang | Non-invasive method and apparatus for measuring blood glucose concentration |
US5171132A (en) | 1989-12-27 | 1992-12-15 | Seiko Epson Corporation | Two-valve thin plate micropump |
US5091652A (en) * | 1990-01-12 | 1992-02-25 | The Regents Of The University Of California | Laser excited confocal microscope fluorescence scanner and method |
WO1991011533A1 (en) * | 1990-01-26 | 1991-08-08 | E.I. Du Pont De Nemours And Company | Method for isolating primer extension products from template-directed dna polymerase reactions |
DE4006152A1 (en) | 1990-02-27 | 1991-08-29 | Fraunhofer Ges Forschung | MICROMINIATURIZED PUMP |
US5096388A (en) * | 1990-03-22 | 1992-03-17 | The Charles Stark Draper Laboratory, Inc. | Microfabricated pump |
SE470347B (en) | 1990-05-10 | 1994-01-31 | Pharmacia Lkb Biotech | Microstructure for fluid flow systems and process for manufacturing such a system |
EP0465229B1 (en) | 1990-07-02 | 1994-12-28 | Seiko Epson Corporation | Micropump and process for manufacturing a micropump |
US5529679A (en) | 1992-02-28 | 1996-06-25 | Hitachi, Ltd. | DNA detector and DNA detection method |
US5762876A (en) | 1991-03-05 | 1998-06-09 | Molecular Tool, Inc. | Automatic genotype determination |
US5518900A (en) | 1993-01-15 | 1996-05-21 | Molecular Tool, Inc. | Method for generating single-stranded DNA molecules |
US5888819A (en) * | 1991-03-05 | 1999-03-30 | Molecular Tool, Inc. | Method for determining nucleotide identity through primer extension |
US6004744A (en) * | 1991-03-05 | 1999-12-21 | Molecular Tool, Inc. | Method for determining nucleotide identity through extension of immobilized primer |
US5167784A (en) | 1991-09-04 | 1992-12-01 | Xerox Corporation | Sequencing large nucleic acid fragments |
DE4143343C2 (en) | 1991-09-11 | 1994-09-22 | Fraunhofer Ges Forschung | Microminiaturized, electrostatically operated micromembrane pump |
US5265327A (en) | 1991-09-13 | 1993-11-30 | Faris Sadeg M | Microchannel plate technology |
US5405747A (en) * | 1991-09-25 | 1995-04-11 | The Regents Of The University Of California Office Of Technology Transfer | Method for rapid base sequencing in DNA and RNA with two base labeling |
US5674679A (en) | 1991-09-27 | 1997-10-07 | Amersham Life Science, Inc. | DNA cycle sequencing |
US5756285A (en) | 1991-09-27 | 1998-05-26 | Amersham Life Science, Inc. | DNA cycle sequencing |
JP3509859B2 (en) * | 1991-11-07 | 2004-03-22 | ナノトロニクス,インコーポレイテッド | Hybridization of chromophore and fluorophore conjugated polynucleotides to create donor-donor energy transfer systems |
US5632957A (en) | 1993-11-01 | 1997-05-27 | Nanogen | Molecular biological diagnostic systems including electrodes |
US5209834A (en) | 1992-03-09 | 1993-05-11 | The United States Of America As Represented By The United States Department Of Energy | Ordered transport and identification of particles |
US5304487A (en) * | 1992-05-01 | 1994-04-19 | Trustees Of The University Of Pennsylvania | Fluid handling in mesoscale analytical devices |
DE4220077A1 (en) | 1992-06-19 | 1993-12-23 | Bosch Gmbh Robert | Micro-pump for delivery of gases - uses working chamber warmed by heating element and controlled by silicon wafer valves. |
JPH0622798A (en) | 1992-07-07 | 1994-02-01 | Hitachi Ltd | Method for determining base sequence |
US5306403A (en) * | 1992-08-24 | 1994-04-26 | Martin Marietta Energy Systems, Inc. | Raman-based system for DNA sequencing-mapping and other separations |
US5403709A (en) * | 1992-10-06 | 1995-04-04 | Hybridon, Inc. | Method for sequencing synthetic oligonucleotides containing non-phosphodiester internucleotide linkages |
AU671820B2 (en) | 1993-02-10 | 1996-09-12 | Promega Corporation | Non-radioactive DNA sequencing |
US5436149A (en) | 1993-02-19 | 1995-07-25 | Barnes; Wayne M. | Thermostable DNA polymerase with enhanced thermostability and enhanced length and efficiency of primer extension |
US5547859A (en) | 1993-08-02 | 1996-08-20 | Goodman; Myron F. | Chain-terminating nucleotides for DNA sequencing methods |
US5659171A (en) | 1993-09-22 | 1997-08-19 | Northrop Grumman Corporation | Micro-miniature diaphragm pump for the low pressure pumping of gases |
US5470710A (en) * | 1993-10-22 | 1995-11-28 | University Of Utah | Automated hybridization/imaging device for fluorescent multiplex DNA sequencing |
US5610287A (en) * | 1993-12-06 | 1997-03-11 | Molecular Tool, Inc. | Method for immobilizing nucleic acid molecules |
CH689836A5 (en) | 1994-01-14 | 1999-12-15 | Westonbridge Int Ltd | Micropump. |
US6028190A (en) * | 1994-02-01 | 2000-02-22 | The Regents Of The University Of California | Probes labeled with energy transfer coupled dyes |
US5654419A (en) | 1994-02-01 | 1997-08-05 | The Regents Of The University Of California | Fluorescent labels and their use in separations |
US5631734A (en) | 1994-02-10 | 1997-05-20 | Affymetrix, Inc. | Method and apparatus for detection of fluorescently labeled materials |
AU1854895A (en) | 1994-03-08 | 1995-09-25 | Amersham International Plc | Modifying nucleotide analogues |
US5872244A (en) * | 1994-09-02 | 1999-02-16 | Andrew C. Hiatt | 3' protected nucleotides for enzyme catalyzed template-independent creation of phosphodiester bonds |
US5763594A (en) | 1994-09-02 | 1998-06-09 | Andrew C. Hiatt | 3' protected nucleotides for enzyme catalyzed template-independent creation of phosphodiester bonds |
US6015668A (en) * | 1994-09-30 | 2000-01-18 | Life Technologies, Inc. | Cloned DNA polymerases from thermotoga and mutants thereof |
US5695934A (en) * | 1994-10-13 | 1997-12-09 | Lynx Therapeutics, Inc. | Massively parallel sequencing of sorted polynucleotides |
US5514256A (en) | 1994-10-28 | 1996-05-07 | Battelle Memorial Institute | Apparatus for improved DNA sequencing |
US5707506A (en) * | 1994-10-28 | 1998-01-13 | Battelle Memorial Institute | Channel plate for DNA sequencing |
US5556790A (en) | 1994-12-05 | 1996-09-17 | Pettit; John W. | Method for Automated DNA sequencing |
US5710628A (en) * | 1994-12-12 | 1998-01-20 | Visible Genetics Inc. | Automated electrophoresis and fluorescence detection apparatus and method |
US5786142A (en) * | 1995-05-30 | 1998-07-28 | Visible Genetics Inc. | Electrophoresis and fluorescence detection method |
US5599695A (en) * | 1995-02-27 | 1997-02-04 | Affymetrix, Inc. | Printing molecular library arrays using deprotection agents solely in the vapor phase |
US5876187A (en) * | 1995-03-09 | 1999-03-02 | University Of Washington | Micropumps with fixed valves |
US6362002B1 (en) * | 1995-03-17 | 2002-03-26 | President And Fellows Of Harvard College | Characterization of individual polymer molecules based on monomer-interface interactions |
US5795782A (en) * | 1995-03-17 | 1998-08-18 | President & Fellows Of Harvard College | Characterization of individual polymer molecules based on monomer-interface interactions |
US5750341A (en) | 1995-04-17 | 1998-05-12 | Lynx Therapeutics, Inc. | DNA sequencing by parallel oligonucleotide extensions |
US5675155A (en) | 1995-04-26 | 1997-10-07 | Beckman Instruments, Inc. | Multicapillary fluorescent detection system |
CA2222744C (en) * | 1995-05-31 | 2008-03-25 | Amersham Life Science, Inc. | Thermostable dna polymerases |
US5861287A (en) * | 1995-06-23 | 1999-01-19 | Baylor College Of Medicine | Alternative dye-labeled primers for automated DNA sequencing |
US5856174A (en) * | 1995-06-29 | 1999-01-05 | Affymetrix, Inc. | Integrated nucleic acid diagnostic device |
US5733729A (en) * | 1995-09-14 | 1998-03-31 | Affymetrix, Inc. | Computer-aided probability base calling for arrays of nucleic acid probes on chips |
SE9504099D0 (en) * | 1995-11-16 | 1995-11-16 | Pharmacia Biotech Ab | A method of sequencing |
US5776767A (en) | 1995-12-12 | 1998-07-07 | Visible Genetics Inc. | Virtual DNA sequencer |
US5705018A (en) * | 1995-12-13 | 1998-01-06 | Hartley; Frank T. | Micromachined peristaltic pump |
JP4073038B2 (en) | 1995-12-15 | 2008-04-09 | ジーイー・ヘルスケア・バイオサイエンス・コーポレイション | Thermostable DNA polymerase from Thermoanaerobacter thermohydrosulfurica and its mutant enzyme from which exonuclease activity has been removed |
WO1997022719A1 (en) * | 1995-12-18 | 1997-06-26 | Washington University | Method for nucleic acid analysis using fluorescence resonance energy transfer |
US6361937B1 (en) * | 1996-03-19 | 2002-03-26 | Affymetrix, Incorporated | Computer-aided nucleic acid sequencing |
SE9601318D0 (en) * | 1996-04-04 | 1996-04-04 | Pharmacia Biosensor Ab | Method for nucleic acid analysis |
US6432634B1 (en) * | 1996-04-18 | 2002-08-13 | Visible Genetics Inc. | Method, apparatus and kits for sequencing of nucleic acids using multiple dyes |
JP2000512744A (en) * | 1996-05-16 | 2000-09-26 | アフィメトリックス,インコーポレイテッド | System and method for detecting label material |
US6221654B1 (en) * | 1996-09-25 | 2001-04-24 | California Institute Of Technology | Method and apparatus for analysis and sorting of polynucleotides based on size |
US6020457A (en) * | 1996-09-30 | 2000-02-01 | Dendritech Inc. | Disulfide-containing dendritic polymers |
US5858671A (en) * | 1996-11-01 | 1999-01-12 | The University Of Iowa Research Foundation | Iterative and regenerative DNA sequencing method |
US6024925A (en) * | 1997-01-23 | 2000-02-15 | Sequenom, Inc. | Systems and methods for preparing low volume analyte array elements |
US6017702A (en) * | 1996-12-05 | 2000-01-25 | The Perkin-Elmer Corporation | Chain-termination type nucleic acid sequencing method including 2'-deoxyuridine-5'-triphosphate |
US5876934A (en) * | 1996-12-18 | 1999-03-02 | Pharmacia Biotech Inc. | DNA sequencing method |
US6828094B2 (en) * | 1996-12-20 | 2004-12-07 | Roche Diagnostics Gmbh | Method for the uncoupled, direct, exponential amplification and sequencing of DNA molecules with the addition of a second thermostable DNA polymerase and its application |
CA2281205A1 (en) * | 1997-02-12 | 1998-08-13 | Eugene Y. Chan | Methods and products for analyzing polymers |
US6117634A (en) * | 1997-03-05 | 2000-09-12 | The Reagents Of The University Of Michigan | Nucleic acid sequencing and mapping |
US5837860A (en) * | 1997-03-05 | 1998-11-17 | Molecular Tool, Inc. | Covalent attachment of nucleic acid molecules onto solid-phases via disulfide bonds |
GB9716231D0 (en) * | 1997-07-31 | 1997-10-08 | Amersham Int Ltd | Base analogues |
US5882904A (en) * | 1997-08-04 | 1999-03-16 | Amersham Pharmacia Biotech Inc. | Thermococcus barossii DNA polymerase mutants |
US6346379B1 (en) * | 1997-09-11 | 2002-02-12 | F. Hoffman-La Roche Ag | Thermostable DNA polymerases incorporating nucleoside triphosphates labeled with fluorescein family dyes |
US6511803B1 (en) * | 1997-10-10 | 2003-01-28 | President And Fellows Of Harvard College | Replica amplification of nucleic acid arrays |
US6322968B1 (en) * | 1997-11-21 | 2001-11-27 | Orchid Biosciences, Inc. | De novo or “universal” sequencing array |
US6185030B1 (en) * | 1998-03-20 | 2001-02-06 | James W. Overbeck | Wide field of view and high speed scanning microscopy |
US20030022207A1 (en) * | 1998-10-16 | 2003-01-30 | Solexa, Ltd. | Arrayed polynucleotides and their use in genome analysis |
US6716394B2 (en) * | 1998-08-11 | 2004-04-06 | Caliper Technologies Corp. | DNA sequencing using multiple fluorescent labels being distinguishable by their decay times |
US6245507B1 (en) * | 1998-08-18 | 2001-06-12 | Orchid Biosciences, Inc. | In-line complete hyperspectral fluorescent imaging of nucleic acid molecules |
DE19844931C1 (en) * | 1998-09-30 | 2000-06-15 | Stefan Seeger | Procedures for DNA or RNA sequencing |
DE19849348A1 (en) * | 1998-10-26 | 2000-04-27 | Univ Ludwigs Albert | Identification and/or sequencing of an unknown DNA or RNA sequence adjacent to a known DNA or RNA region comprises linker-mediated PCR following amplification by linear PCR |
US6340750B1 (en) * | 1998-12-18 | 2002-01-22 | The Texas A&M University System | Through bond energy transfer in fluorescent dyes for labelling biological molecules |
US6361671B1 (en) * | 1999-01-11 | 2002-03-26 | The Regents Of The University Of California | Microfabricated capillary electrophoresis chip and method for simultaneously detecting multiple redox labels |
EP1192274A2 (en) * | 1999-03-25 | 2002-04-03 | Hyseq, Inc. | Solution-based methods and materials for sequence analysis by hybridization |
US6521428B1 (en) * | 1999-04-21 | 2003-02-18 | Genome Technologies, Llc | Shot-gun sequencing and amplification without cloning |
US7056661B2 (en) * | 1999-05-19 | 2006-06-06 | Cornell Research Foundation, Inc. | Method for sequencing nucleic acid molecules |
US6818395B1 (en) * | 1999-06-28 | 2004-11-16 | California Institute Of Technology | Methods and apparatus for analyzing polynucleotide sequences |
US6528258B1 (en) * | 1999-09-03 | 2003-03-04 | Lifebeam Technologies, Inc. | Nucleic acid sequencing using an optically labeled pore |
US6309836B1 (en) * | 1999-10-05 | 2001-10-30 | Marek Kwiatkowski | Compounds for protecting hydroxyls and methods for their use |
US6342326B1 (en) * | 2000-05-10 | 2002-01-29 | Beckman Coulter, Inc. | Synthesis and use of acyl fluorides of cyanine dyes |
US20030017461A1 (en) * | 2000-07-11 | 2003-01-23 | Aclara Biosciences, Inc. | Tag cleavage for detection of nucleic acids |
WO2002055997A2 (en) * | 2001-01-12 | 2002-07-18 | Karolinska Innovations Ab | Substrate for fluorescence analysis |
US20040038206A1 (en) * | 2001-03-14 | 2004-02-26 | Jia Zhang | Method for high throughput assay of genetic analysis |
US20030027140A1 (en) * | 2001-03-30 | 2003-02-06 | Jingyue Ju | High-fidelity DNA sequencing using solid phase capturable dideoxynucleotides and mass spectrometry |
US6689478B2 (en) * | 2001-06-21 | 2004-02-10 | Corning Incorporated | Polyanion/polycation multilayer film for DNA immobilization |
US6613523B2 (en) * | 2001-06-29 | 2003-09-02 | Agilent Technologies, Inc. | Method of DNA sequencing using cleavable tags |
US6989267B2 (en) * | 2001-07-02 | 2006-01-24 | Agilent Technologies, Inc. | Methods of making microarrays with substrate surfaces having covalently bound polyelectrolyte films |
US6995841B2 (en) * | 2001-08-28 | 2006-02-07 | Rice University | Pulsed-multiline excitation for color-blind fluorescence detection |
DE60223276T2 (en) * | 2001-08-31 | 2008-08-14 | Datascope Investment Corp. | Method for blocking nonspecific hybridizations of nucleic acid sequences |
US6852492B2 (en) * | 2001-09-24 | 2005-02-08 | Intel Corporation | Nucleic acid sequencing by raman monitoring of uptake of precursors during molecular replication |
US6982165B2 (en) * | 2001-09-24 | 2006-01-03 | Intel Corporation | Nucleic acid sequencing by raman monitoring of molecular deconstruction |
US20040054162A1 (en) * | 2001-10-30 | 2004-03-18 | Hanna Michelle M. | Molecular detection systems utilizing reiterative oligonucleotide synthesis |
EP1497304B1 (en) * | 2002-04-12 | 2014-06-25 | Catalyst Assets LLC | Dual-labeled nucleotides |
JP2006517798A (en) * | 2003-02-12 | 2006-08-03 | イェニソン スベンスカ アクティエボラーグ | Methods and means for nucleic acid sequences |
-
2005
- 2005-01-28 US US11/046,448 patent/US7482120B2/en not_active Expired - Fee Related
-
2006
- 2006-01-30 EP EP06734692A patent/EP1848829B1/en not_active Not-in-force
- 2006-01-30 AT AT06734692T patent/ATE548466T1/en active
- 2006-01-30 CA CA002599477A patent/CA2599477A1/en not_active Abandoned
- 2006-01-30 WO PCT/US2006/004638 patent/WO2006081583A2/en active Application Filing
Patent Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0481065A1 (en) * | 1990-05-07 | 1992-04-22 | Stanford Res Inst Int | Process for nucleic acid hybridization and amplification. |
US5976842A (en) * | 1997-10-30 | 1999-11-02 | Clontech Laboratories, Inc. | Methods and compositions for use in high fidelity polymerase chain reaction |
WO2002044425A2 (en) * | 2000-12-01 | 2002-06-06 | Visigen Biotechnologies, Inc. | Enzymatic nucleic acid synthesis: compositions and methods for altering monomer incorporation fidelity |
WO2004074503A2 (en) * | 2003-02-21 | 2004-09-02 | Hoser Mark J | Nucleic acid sequencing methods, kits and reagents |
Non-Patent Citations (2)
Title |
---|
BRASLAVSKY IDO ET AL: "Sequence information can be obtained from single DNA molecules.", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 1 APR 2003, vol. 100, no. 7, 1 April 2003 (2003-04-01), pages 3960 - 3964, XP002388726, ISSN: 0027-8424 * |
RONAGHI M ET AL: "Real-time DNA sequencing using detection of pyrophosphate release.", ANALYTICAL BIOCHEMISTRY. 1 NOV 1996, vol. 242, no. 1, 1 November 1996 (1996-11-01), pages 84 - 89, XP002388725, ISSN: 0003-2697 * |
Also Published As
Publication number | Publication date |
---|---|
US7482120B2 (en) | 2009-01-27 |
US20060172313A1 (en) | 2006-08-03 |
EP1848829A2 (en) | 2007-10-31 |
EP1848829B1 (en) | 2012-03-07 |
CA2599477A1 (en) | 2006-08-03 |
ATE548466T1 (en) | 2012-03-15 |
WO2006081583A2 (en) | 2006-08-03 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
WO2006081583A3 (en) | Methods and compositions for improving fidelity in a nucleic acid synthesis reaction | |
WO2007005645A3 (en) | Materials and methods for the generation of fully 2'-modified nucleic acid transcripts | |
EP1801213A3 (en) | Polymerase | |
WO2005118806A3 (en) | METHODS AND COMPOSITIONS INVOLVING MicroRNA | |
WO2010034024A3 (en) | Protected monomers and methods of deprotection for rna synthesis | |
WO2010018563A3 (en) | Compositions and methods for the prognosis of lymphoma | |
WO2007014930A3 (en) | Polyammonium/polysiloxane copolymers | |
WO2005059096A3 (en) | Methods for high fidelity production of long nucleic acid molecules with error control | |
WO2009006297A3 (en) | Methods for altering the genome of a monocot plant cell | |
WO2003097794A3 (en) | Universal-tagged oligonucleotide primers and methods of use | |
WO2007107789A3 (en) | Treatment of cns conditions | |
EP2567964A3 (en) | Monomer Compositions for the Synthesis of RNA, Methods of Synthesis, and Methods of Deprotection | |
WO2006128795A3 (en) | Use of amphiphilic block copolymers for producing polymer blends | |
WO2008017079A3 (en) | Dyes and precursors and conjugates thereof | |
WO2008042289A3 (en) | Polymer synthetic technique | |
WO2008098180A3 (en) | Complementary personal lubrificant compositions and delivery system | |
WO2008073960A3 (en) | Oligonucleotides containing high concentrations of guanine monomers | |
TW200702387A (en) | Polycarbonate resin composition having good chemical resistance and flowability | |
WO2006096405A3 (en) | Treatment of amyotrophic lateral sclerosis with pyrimethamine and analogues | |
WO2008011433A3 (en) | Styrenated terpene resin as well as methods of making and using the same | |
WO2009010251A3 (en) | Mutant dna polymerases and related methods | |
WO2008073863A3 (en) | Preparation and utility of substituted allylamines | |
WO2007115929A8 (en) | Thiazolyl-dihydroquinazolines | |
EP1907478A4 (en) | Polycarbonate resin composition having good chemical resistance and flowability | |
WO2006081463A3 (en) | Thermococcus zilligii dna polymerases and variants thereof |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
121 | Ep: the epo has been informed by wipo that ep was designated in this application | ||
WWE | Wipo information: entry into national phase |
Ref document number: 2006734692 Country of ref document: EP |
|
ENP | Entry into the national phase |
Ref document number: 2599477 Country of ref document: CA |