WO2010139959A2 - Alginate oligomers for the inhibition of microbial adherence to surfaces - Google Patents

Alginate oligomers for the inhibition of microbial adherence to surfaces Download PDF

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Publication number
WO2010139959A2
WO2010139959A2 PCT/GB2010/001099 GB2010001099W WO2010139959A2 WO 2010139959 A2 WO2010139959 A2 WO 2010139959A2 GB 2010001099 W GB2010001099 W GB 2010001099W WO 2010139959 A2 WO2010139959 A2 WO 2010139959A2
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alginate oligomer
microorganism
alginate
subject
residues
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French (fr)
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WO2010139959A3 (en
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Edvar ONSØYEN
Rolf Myrvold
Arne Dessen
David Thomas
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Algipharma Ipr As
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Publication of WO2010139959A3 publication Critical patent/WO2010139959A3/en

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    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01NPRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
    • A01N43/00Biocides, pest repellants or attractants, or plant growth regulators containing heterocyclic compounds
    • A01N43/02Biocides, pest repellants or attractants, or plant growth regulators containing heterocyclic compounds having rings with one or more oxygen or sulfur atoms as the only ring hetero atoms
    • A01N43/04Biocides, pest repellants or attractants, or plant growth regulators containing heterocyclic compounds having rings with one or more oxygen or sulfur atoms as the only ring hetero atoms with one hetero atom
    • A01N43/14Biocides, pest repellants or attractants, or plant growth regulators containing heterocyclic compounds having rings with one or more oxygen or sulfur atoms as the only ring hetero atoms with one hetero atom six-membered rings
    • A01N43/16Biocides, pest repellants or attractants, or plant growth regulators containing heterocyclic compounds having rings with one or more oxygen or sulfur atoms as the only ring hetero atoms with one hetero atom six-membered rings with oxygen as the ring hetero atom
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61LMETHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES
    • A61L15/00Chemical aspects of, or use of materials for, bandages, dressings or absorbent pads
    • A61L15/16Bandages, dressings or absorbent pads for physiological fluids such as urine or blood, e.g. sanitary towels, tampons
    • A61L15/22Bandages, dressings or absorbent pads for physiological fluids such as urine or blood, e.g. sanitary towels, tampons containing macromolecular materials
    • A61L15/28Polysaccharides or their derivatives
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61LMETHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES
    • A61L15/00Chemical aspects of, or use of materials for, bandages, dressings or absorbent pads
    • A61L15/16Bandages, dressings or absorbent pads for physiological fluids such as urine or blood, e.g. sanitary towels, tampons
    • A61L15/42Use of materials characterised by their function or physical properties
    • A61L15/46Deodorants or malodour counteractants, e.g. to inhibit the formation of ammonia or bacteria
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61LMETHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES
    • A61L27/00Materials for grafts or prostheses or for coating grafts or prostheses
    • A61L27/28Materials for coating prostheses
    • A61L27/34Macromolecular materials
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61LMETHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES
    • A61L27/00Materials for grafts or prostheses or for coating grafts or prostheses
    • A61L27/50Materials characterised by their function or physical properties, e.g. injectable or lubricating compositions, shape-memory materials, surface modified materials
    • A61L27/54Biologically active materials, e.g. therapeutic substances
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61LMETHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES
    • A61L29/00Materials for catheters, medical tubing, cannulae, or endoscopes or for coating catheters
    • A61L29/08Materials for coatings
    • A61L29/085Macromolecular materials
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61LMETHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES
    • A61L29/00Materials for catheters, medical tubing, cannulae, or endoscopes or for coating catheters
    • A61L29/14Materials characterised by their function or physical properties, e.g. lubricating compositions
    • A61L29/16Biologically active materials, e.g. therapeutic substances
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61LMETHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES
    • A61L31/00Materials for other surgical articles, e.g. stents, stent-grafts, shunts, surgical drapes, guide wires, materials for adhesion prevention, occluding devices, surgical gloves, tissue fixation devices
    • A61L31/08Materials for coatings
    • A61L31/10Macromolecular materials
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61LMETHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES
    • A61L31/00Materials for other surgical articles, e.g. stents, stent-grafts, shunts, surgical drapes, guide wires, materials for adhesion prevention, occluding devices, surgical gloves, tissue fixation devices
    • A61L31/14Materials characterised by their function or physical properties, e.g. injectable or lubricating compositions, shape-memory materials, surface modified materials
    • A61L31/16Biologically active materials, e.g. therapeutic substances
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61LMETHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES
    • A61L2300/00Biologically active materials used in bandages, wound dressings, absorbent pads or medical devices
    • A61L2300/20Biologically active materials used in bandages, wound dressings, absorbent pads or medical devices containing or releasing organic materials
    • A61L2300/23Carbohydrates
    • A61L2300/232Monosaccharides, disaccharides, polysaccharides, lipopolysaccharides
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61LMETHODS OR APPARATUS FOR STERILISING MATERIALS OR OBJECTS IN GENERAL; DISINFECTION, STERILISATION OR DEODORISATION OF AIR; CHEMICAL ASPECTS OF BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES; MATERIALS FOR BANDAGES, DRESSINGS, ABSORBENT PADS OR SURGICAL ARTICLES
    • A61L2300/00Biologically active materials used in bandages, wound dressings, absorbent pads or medical devices
    • A61L2300/40Biologically active materials used in bandages, wound dressings, absorbent pads or medical devices characterised by a specific therapeutic activity or mode of action
    • A61L2300/404Biocides, antimicrobial agents, antiseptic agents

Definitions

  • the present invention relates to the use of alginate oligomers to inhibit the adherence of microorganisms to surfaces.
  • the invention is based on the surprising discovery that certain alginate oligomers are capable of interfering with the mechanisms by which microorganisms, in particular microorganisms such as bacteria, attach to surfaces.
  • the invention also provides a method for inhibiting the adherence of microorganisms to surfaces, including in or at both biotic and abiotic sites or locations.
  • both medical and non-medical uses and methods are provided to combat infection or to decontaminate or prevent or inhibit contamination (i.e colonisation) of animate and inanimate surfaces, e.g. for disinfection and cleaning purposes.
  • microorganisms have little or no detrimental impact on human activities. Some are necessary for human well-being and others are even beneficial. However, many microorganisms have activities that are detrimental to human activities, for instance, by causing disease, by damaging crops and animal health, by spoiling food, or by negatively affecting the environment. The ability to control microorganism populations is essential to mitigate the potentially detrimental effects of microorganism activities.
  • An effective mechanism for controlling the effects of microorganism populations is to control the numbers of individuals in microorganism populations, or to control the activity of the individuals in microorganism populations. This can be achieved by treating target populations with agents that can kill or inactivate the microorganisms or agents which can inhibit the growth or replication of the microorganisms, i.e. antimicrobial agents.
  • Agents with antimicrobial functions include physical conditions such as UV, X-ray and gamma radiation, extremes of temperature, pH, osmotic pressure and atmospheric pressure, and also chemicals, e.g. disinfectants, antiseptics and antimicrobial chemotherapeutic compounds (antibiotics, antifungals, antivirals and antiprotozoans, for instance).
  • An alternative strategy is to interfere with the mechanisms by which microorganisms attach themselves to surfaces; an essential early step in the establishment, maintenance or expansion of a population of microorganisms on a surface or a location underlying a surface. By inhibiting or disrupting adherence the contamination/colonisation of a location by microorganisms can be prevented, reduced or eliminated and thus controlled.
  • microorganism populations are such that vast expenditures of time and resources are made each year globally to achieve this end.
  • Alternative or improved strategies for control of microorganism populations are always needed, especially in view of the emergence of microorganisms that have developed, or begun to develop, resistance to some of the control strategies currently available.
  • alginates namely alginate oligomers
  • alginate oligomers are effective in interfering with the mechanisms by which microorganisms attach to surfaces. These compounds are therefore capable of addressing the needs described above.
  • Alginates are linear polymers of (1-4) linked ⁇ -D-mannuronic acid (M) and/or its C-5 epimer ⁇ -L-guluronic acid (G).
  • M and G residues can be organised as homopolymeric blocks of contiguous M or G residues, as blocks of alternating M and G residues and single M or G residues can be found interspacing these block structures.
  • An alginate molecule can comprise some or all of these structures and such structures might not be uniformly distributed throughout the polymer. In the extreme, there exists a homopolymer of guluronic acid (polyguluronate) or a homopolymer of mannuronic acid (polymannuronate).
  • Alginates have been isolated from marine brown algae (e.g. certain species of Durvillea, Lessonia and Laminaria) and bacteria such as Pseudomonas aeruginosa and Azotobacter vinelandii.
  • Other pseudomonads e.g. Pseudomonas fluorescens, Pseudomonas putida, and Pseudomonas mendocina
  • these non-producing pseudomonads can be induced to produce stably large quantities of alginate.
  • Alginate is synthesised as polymannuronate and G residues are formed by the action of epimerases (specifically C-5 epimerases) on the M residues in the polymer.
  • epimerases specifically C-5 epimerases
  • the G residues are predominantly organised as G blocks because the enzymes involved in alginate biosynthesis in algae preferentially introduce the G neighbouring another G, thus converting stretches of M residues into G-blocks. Elucidation of these biosynthetic systems has allowed the production of alginates with specific primary structures (WO 94/09124, Gimmestad, M ef a/, Journal of Bacteriology, 2003, Vo1 185(12) 3515-3523 and WO 2004/011628).
  • Alginates are typically isolated from natural sources as large high molecular weight polymers (e.g. an average molecular weight in the range 300,000 to 500,000 Daltons). It is known, however, that such large alginate polymers may be degraded, or broken down, e.g. by chemical or enzymatic hydrolysis to produce alginate structures of lower molecular weight. Alginates that are used industrially typically have " an average molecular weight in the range of 100,000 to 300,000 Daltons (such alginates are still considered to be large polymers) although alginates of an average molecular weight of approximately 35,000 Daltons have been used in pharmaceuticals.
  • alginate oligomers can interfere with the mechanisms by which microorganisms attach to a surface.
  • the exact mechanism for these activities is not known, but the activities are believed to be a consequence of a direct effect on the interactions that occur between microorganisms and surfaces.
  • the invention provides a method for inhibiting the adherence of a microorganism to a surface, said method comprising contacting the microorganism and/or the surface with an alginate oligomer.
  • alginates typically occur as polymers of an average molecular weight of at least 35,000 Daltons i.e. approximately 175 to 190 monomer residues, although typically much higher and an alginate oligomer according to the present invention may be defined as a material obtained by fractionation (i.e. size reduction) of an alginate polymer, commonly a naturally occurring alginate.
  • An alginate oligomer can be considered to be an alginate of an average molecular weight of less than 35,000 Daltons (i.e. less than approximately 190 or less than 175 monomer residues), in particular an alginate of an average molecular weight of less than 30,000 Daltons (i.e. less than approximately 175 or less than 150 monomer residues) more particularly an average molecular weight of less than 25,000 or 20,000 Daltons (i.e. less than approximately 135 or 125 monomer residues or less than approximately 110 or 100 monomer residues).
  • an oligomer generally comprises 2 or more units or residues and an alginate oligomer for use according to the invention will typically contain 2 to 100 monomer residues, preferably 2 to 75, preferably 2 to 50, more preferably 2 to 40, 2 to 35 or 2 to 30 residues.
  • an alginate oligomer for use according to the invention will typically have an average molecular weight of 350 to 20,000 Daltons, preferably 350 to 15,000 Daltons, preferably 350 to 10,000 Daltons and more preferably 350 to 8000 Daltons, 350 to 7000 Daltons, or 350 to 6,000 Daltons.
  • the alginate oligomer may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn) of 2 to 100, preferably 2 to 75, preferably 2 to 50, more preferably 2 to 40, 2 to 35 or 2 to 30, 2 to 28, 2 to 25, 2 to 22, 2 to 20, 2 to 18, 2 to 17, 2 to 15 or 2 to 12.
  • DP degree of polymerisation
  • DPn number average degree of polymerisation
  • the alginate oligomer does not have a number of residues, DP br DPn of 9 or 13.
  • An alginate oligomer will, as noted above, contain (or comprise) guluronate or guluronic acid (G) and/or mannuronate or mannuronic acid (M) residues or units.
  • An alginate oligomer according to the invention will preferably be composed solely, or substantially solely (i.e. consist essentially of) uronate/uronic acid residues, more particularly solely or substantially solely of G and/or M residues.
  • at least 80%, more particularly at least 85, 90, 95 or 99% of the monomer residues may be uronate/uronic acid residues, or, more particularly G and/or M residues.
  • the alginate oligomer will not comprise other residues or units (e.g. other saccharide residues, or more particularly other uronic acid/uronate residues).
  • the alginate oligomer is preferably a linear oligomer.
  • At least 30% of the monomer residues of the alginate oligomer are G residues (i.e. guluronate or guluronic acid).
  • the alginate oligomer will contain at least 30% guluronate (or guluronic acid) residues.
  • Specific embodiments thus include alginate oligomers with (e.g. containing) 30 to 70% G (guluronate) residues or 70 to 100% G (guluronate) residues.
  • a representative alginate oligomer for use according to the present invention may contain at least 70% G residues (i.e. at least 70% of the monomer residues of the alginate oligomer will be G residues).
  • the alginate oligomer may be an oligoguluronate (i.e. a homooligomer of G, or 100% G)
  • the above described alginates of the invention have a primary structure wherein the majority of the G residues are in so called G-blocks.
  • G-blocks Preferably at least 50%, more preferably at least 70 or 75%, and most preferably at least 80, 85, 90, 92 or 95% of the single G residues are in G- blocks.
  • a G block is a contiguous sequence of at least two G residues, preferably at least 3 contiguous G residues, more preferably at least 4 or 5 contiguous G residues, most preferably at least 7 contiguous G residues.
  • At least 90% of the G residues are linked 1-4 to another G residue. More particularly at least 95%, more preferably at least 98%, and most preferably at least 99% of the G residues of the alginate are linked 1-4 to another G residue.
  • the alginate oligomer of use in the invention is preferably a 3- to 35-mer, more preferably a 3- to 28-mer, in particular a 4- to 25-mer, especially a 6- to 22- mer, in particular an 8- to 20-mer, especially a 10- to 15-mer, e.g. having a molecular weight in the range 350 to 6400 Daltons or 350 to 6000 Daltons, preferably 550 to 5500 Daltons, preferably 750 to 5000 Daltons, and especially 750 to 4500 Daltons or 2000 to 3000 Daltons.
  • the monomeric residues in the alginate oligomer may be the same or different and not all need carry electrically charged groups although it is preferred that the majority (e.g. at least 60%, preferably at least 80% more preferably at least 90%) do. It is preferred that a substantial majority, e.g. at least 80%, more preferably at least 90% of the charged groups have the same polarity.
  • the ratio of hydroxyl groups to charged groups is preferably at least 2:1 , more especially at least 3:1.
  • the alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DP n ), of 3-28, 4-25, 6-22, 8- 20 or 10-15, or 5 to 18 or 7 to 15 or 8 to 12, especially 10.
  • DP degree of polymerisation
  • DP n number average degree of polymerisation
  • the alginate oligomer of the invention may have a degree of polymerisation (DP), or a nurnber average degree of polymerisation (DPn), of 8-50, 8-40, 8-35, 8- 30, 8-28, 8-25, 8-22, 8-20, 8-18, 8-16 or 8-14.
  • DP degree of polymerisation
  • DPn nurnber average degree of polymerisation
  • the alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 9-50, 9-40, 9-35, 9- 30, 9-28, 9-25, 9-22, 9-20, 9-18, 9-16 or 9-14.
  • DP degree of polymerisation
  • DPn number average degree of polymerisation
  • the alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 10-50, 10-40, 10-35, 10-30, 10-28, 10-25, 10-22, 10-20, 10-18, 10-16, 10-14, 10-13, 10-12 or 10-11.
  • DP degree of polymerisation
  • DPn number average degree of polymerisation
  • the alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 11-50, 11-40, 11-35, 11-30, 11-28, 11-25, 11-22, 11-20, 11-18, 11-16, 11-14, 11-13 or 11-12.
  • DP degree of polymerisation
  • DPn number average degree of polymerisation
  • the alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 12-50, 12-40, 12-35, 12-30, 12-28, 12-25, 12-22, 12-20, 12-18, 12-16 or 12-14.
  • DP degree of polymerisation
  • DPn number average degree of polymerisation
  • the alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 13-50, 13-40, 13-35, 13-30, 13-28, 13-25, 13-22, 13-20, 13-18 or 13-16.
  • DP degree of polymerisation
  • DPn number average degree of polymerisation
  • the alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 14-50, 14-40, 14-35, 14-30, 14-28, 14-25, 14-22, 14-20, 14-18 or 14-16.
  • the alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 15-50, 15-40, 15-35, 15-30, 15-28, 15-25, 15-22, 15-20, 15-18 or 15-16.
  • the alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 18-50, 18-40, 18-35, 18-30, 18-28, 18-25, 18-22 or 18-20.
  • DP degree of polymerisation
  • DPn number average degree of polymerisation
  • the alginate oligomer of the invention is substantially free, preferably essentially free, of alginate oligomers having a degree of polymerisation outside of the ranges disclosed herein. This may be expressed in terms of the molecular weight distribution of the alginate oligomer of the invention, e.g. the percentage of each mole of the alginate oligomer being used in accordance with the invention which has a DP outside the relevant range.
  • the molecular weight distribution is preferably such that no more than 10%, preferably no more than 9, 8, 7, 6, 5, 4, 3, 2, or 1% mole has a DP of three, two or one higher than the relevant upper limit for DPn. Likewise it is preferred that no more than 10%, preferably no more than 9, 8, 7, 6, 5, 4, 3, 2, or 1% mole has a DP below a number three, two or one smaller than the relevant lower limit for DPn.
  • Suitable alginate oligomers are described in WO2007/039754, WO2007/039760, WO 2008/125828, and PCT/GB2008/003607, the disclosures of which are explicitly incorporated by reference herein in their entirety.
  • Representative suitable alginate oligomers have a DP n in the range 5 to 30, a guluronate/galacturonate fraction (F 6 ) of at least 0.80, a mannuronate fraction (F M ) of no more than 0.20, and at least 95 mole% of DP no more than 25.
  • alginate oligomers have a number average degree of polymerization in the range 7 to 15 (preferably 8 to 12), a guluronate/galacturonate fraction (F 6 ) of at least 0.85 (preferably at least 0.90), a mannuronate fraction (F M ) of no more than 0.15 (preferably no more than 0.10), and having at least 95% mole with a degree of polymerization less than 17 (preferably less than 14).
  • alginate oligomers have a number average degree of polymerization in the range 5 to 18 (especially 7 to 15), a guluronate/galacturonate fraction (F 6 ) of at least 0.80 (preferably at least 0.85, especially at least 0.92), a mannuronate fraction (F M ) of no more than 0.20 (preferably no more than 0.15, especially no more than 0.08), and having at least 95% mole with a degree of polymerization less than 20 (preferably less than 17).
  • F 6 guluronate/galacturonate fraction
  • F M mannuronate fraction
  • alginate oligomers have a number average degree of polymerization in the range 5 to 18, a guluronate/galacturonate fraction (F G ) of at least 0.92, a mannuronate fraction (F M ) of no more than 0.08, and having at least 95% mole with a degree of polymerization less than 20.
  • Suitable alginate oligomers have a number average degree of polymerization in the range 5 to 18 (preferably 7 to 15, more preferably 8 to 12, especially about 10), a guluronate/galacturonate fraction (F G ) of at least 0.80 (preferably at least 0.85, more preferably at least 0.90, especially at least 0.92, most especially at least 0.95), a mannuronate fraction (F M ) of no more than 0.20 (preferably no more than 0.15, more preferably no more than 0.10, especially no more than 0.08, most especially no more than 0.05), and having at least 95% mole with a degree of polymerization less than 20 (preferably less than 17, more preferably less than 14).
  • F G guluronate/galacturonate fraction
  • F M mannuronate fraction
  • alginate oligomers have a number average degree of polymerization in the range 7 to 15 (preferably 8 to 12), a guluronate/galacturonate fraction (F 6 ) of at least 0.92 (preferably at least 0.95), a mannuronate fraction (F M ) of no more than 0.08 (preferably no more than 0.05), and having at least 95% mole with a degree of polymerization less than 17 (preferably less than 14).
  • alginate oligomers have a number average degree of polymerization in the range 5 to 18, a guluronate/galacturonate fraction (F G ) of at least 0.80, a mannuronate fraction (F M ) of no more than 0.20, and having at least 95% mole with a degree of polymerization less than 20.
  • alginate oligomers have a number average degree of polymerization in the range 7 to 15, a guluronate/galacturonate fraction (F G ) of at least 0.85, a mannuronate fraction (F M ) of no more than 0.15, and having at least 95% mole with a degree of polymerization less than 17.
  • alginate oligomers have a number average degree of polymerization in the range 7 to 15, a guluronate/galacturonate fraction (F G ) of at least 0.92, a mannuronate fraction (F M ) of no more than 0.08, and having at least 95% mole with a degree of polymerization less than 17.
  • alginate oligomers favoured according to the present invention is alginate oligomers defined as so-called "high G” or "G-block” oligomers i.e. having a high content of G residues or G-blocks (e.g wherein at least 70% of the monomer residues are G, preferably arranged in G- blocks).
  • high G or G-block oligomers i.e. having a high content of G residues or G-blocks (e.g wherein at least 70% of the monomer residues are G, preferably arranged in G- blocks).
  • G-block oligomers
  • other types of alginate oligomer may also be used, including in particular "high M” or "M-block” oligomers or MG-block oligomers, as described further below.
  • alginate oligomers with high proportions of a single monomer type, and with said monomers of this type being present predominantly in contiguous sequences of that monomer type, that represent oligomers that are particularly preferred, e.g. oligomers wherein at least 70% of the monomer residues in the oligomer are G residues linked 1-4 to another G-residue, or more preferably at least 75%, and most preferably at least 80, 85, 90, 92, 93, 94, 95, 96, 97, 98, 99% of the monomers residues of the oligomer are G residues linked 1-4 to another G residue.
  • This 1-4 linkage of two G residues can be alternatively expressed as a guluronic unit bound to an adjacent guluronic unit.
  • more than 50% of the monomer residues of the alginate oligomer are M residues (i.e. mannuronate or mannuronic acid).
  • the alginate oligomer will contain more than 50% mannuronate (or mannuronic acid) residues.
  • Specific embodiments thus include alginate oligomers with (e.g. containing) 50 to 70% M (mannuronate) residues or e.g. 70 to 100% M (mannuronate) residues. Further specific embodiments also include oligomers containing 71 to 85% M residues or 85 to 100% M residues.
  • a representative alginate oligomer for use according to this embodiment of the present invention will contain more than 70% M residues (i.e. more than 70% of the monomer residues of the alginate oligomer will be M residues).
  • the alginate oligomer may be an oligomannuronate (i.e. a homooligomer of M, or 100% M).
  • the above described alginates of the invention have a primary structure wherein the majority of the M residues are in so called M- blocks.
  • M- blocks preferably at least 50%, more preferably at least 70 or 75%, and most preferably at least 80, 85, 90 or 95% of the M residues are in M- blocks.
  • An M block is a contiguous sequence of at least two M residues, preferably at least 3 contiguous M residues, more preferably at least 4 or 5 contiguous M residues, most preferably at least 7 contiguous M residues.
  • At least 90% of the M residues are linked 1-4 to another M residue. More particularly at least 95%, more preferably at least 98%, and most preferably at least 99% of the M residues of the alginate are linked 1-4 to another M residue.
  • Other preferred oligomers are alginate oligomers wherein at least 70% of the monomer residues in the oligomer are M residues linked 1-4 to another M- residue, or more preferably at least 75%, and most preferably at least 80, 85, 90, 92, 93, 94, 95, 96, 97, 98, 99% of the monomers residues of the oligomer are M residues linked 1-4 to another M residue.
  • This 1-4 linkage of two M residues can be alternatively expressed as a mannuronic unit bound to an adjacent mannuronic unit.
  • the alginate oligomers of the invention comprise a sequence of alternating M and G residues.
  • a sequence of at least three, preferably at least four, alternating M and G residues represents an MG block.
  • the alginate oligomers of the invention comprise an MG block.
  • an MG block is a sequence of at least three contiguous residues consisting of G and M residues and wherein each non-terminal (internal) G residue in the contiguous sequence is linked 1-4 and 4-1 to an M residue and each non-terminal (internal) M residue in the contiguous sequence is linked 1-4 and 4-1 to a G residue.
  • the MG block is at least 5 or 6 contiguous residues, more preferably at least 7 or 8 contiguous residues.
  • the minority uronate in the alginate oligomer is found predominantly in MG blocks.
  • the alginate oligomer is arranged such that at least 50%, at least 60%, at least 70%, at least 80%, at least 85%, at least 90%, at least 95%, at least 99%, e.g. 100% of the G and M residues in the oligomer are arranged in MG blocks.
  • the invention extends to embodiments wherein at least 1% but less than 100% of the monomer residues of the oligomer are G residues (i.e. guluronate or guluronic acid), more particularly, and as defined further below, at least 30% of the monomer residues are G residues.
  • the MG block containing alginate oligomer may contain at least 1%, but less than 100%, guluronate (or guluronic acid) residues, but generally the MG block containing alginate oligomer will contain at least 30% (or at least 35, 40 or 45% or 50% G) but less than 100% G.
  • Specific embodiments thus include MG block containing alginate oligomers with (e.g.
  • a representative MG block containing alginate oligomer for use according to the present invention may contain more than 30%, but less than 70%, G residues (i.e. more than 30%, but less than 70%, of the monomer residues of the MG block alginate oligomer will be G residues).
  • the MG block containing alginate oligomer can have e.g. between 35% and 65%, 40% and 60% or 45% and 55% G residues.
  • the MG block containing alginate oligomer may have approximately equal amounts of G and M residues (e.g. ratios between 65% G/35% M and 35% G/65% M, for instance 60% G/40% M and 40% G/60% M; 55% G/45% M and 45% G/55% M; 53% G/47% M and 47% G/53% M; 51% G/49% M and 49% G/51% M; e.g. about 50% G and about 50% M) and these residues are arranged predominantly, preferably entirely or as completely as possible, in an alternating MG pattern (e.g. at least 50% or at least 60, 70, 80, 85, 90 or 95% or 100% of the M and G residues are in an alternating MG sequence).
  • G and M residues e.g. ratios between 65% G/35% M and 35% G/65% M, for instance 60% G/40% M and 40% G/60% M; 55% G/45% M and 45% G/55% M; 53% G/47% M and 47% G/53% M; 51%
  • the terminal uronic acid residues of the oligomers of the invention do not have a double bond, especially a double bond situated between the C 4 and C 5 atom.
  • Such oligomers may be described as having saturated terminal uronic acid residues. The skilled man would be able to prepare oligomers with saturated terminal uronic acid residues without undue burden. This may be through the use of production techniques which yield such oligomers, or by converting (saturating) oligomers produced by processes that yield oligomers with unsaturated terminal uronic acid residues.
  • the alginate oligomer will typically carry a charge and so counter ions for the alginate oligomer may be any physiologically tolerable ion, especially those commonly used for charged drug substances, e.g. sodium, potassium, ammonium, chloride, mesylate, meglumine, etc. Ions which promote alginate gelation e.g. group 2 metal ions may also be used. While the alginate oligomer may be a synthetic material generated from the polymerisation of appropriate numbers of guluronate and mannuronate residues, the alginate oligomers of use in the invention may conveniently be obtained, produced or derived, from natural sources such as those mentioned above, namely natural alginate source materials.
  • Polysaccharide to oligosaccharide cleavage to produce the alginate oligomer useable according to the present invention may be performed using conventional polysaccharide lysis techniques such as enzymatic digestion and acid hydrolysis.
  • acid hydrolysis is used to prepare the alginate oligomers on the invention.
  • enzymic digestion is used with an additional processing step(s) to saturate the terminal uronic acids in the oligomers.
  • Oligomers may then be separated from the polysaccharide breakdown products chromatographically using an ion exchange resin or by fractionated precipitation or solubilisation or filtration.
  • US 6,121 ,441 and WO 2008/125828 which are explicitly incorporated by reference herein in their entirety, describe a process suitable for preparing the alginate oligomers of use in the invention. Further information and discussion can be found in for example in "Handbooks of Hydrocolloids?, Ed. Phillips and Williams, CRC, Boca Raton, Florida, USA, 2000, which textbook is explicitly incorporated by reference herein in its entirety.
  • the alginate oligomers may also be chemically modified,, including but not limited to modification to add charged groups (such as carboxylated or carboxymethylated glycans) and alginate oligomers modified to alter flexibility (e.g. by periodate oxidation).
  • Alginate oligomers for example oligoguluronic acids
  • suitable for use according to the invention may conveniently be produced by acid hydrolysis of alginic acid from, but not limited to, Laminaria hyperbora and Lessonia nigrescens, dissolution at neutral pH, addition of mineral acid reduce the pH to 3.4 to precipitate the alginate oligomer (oligoguluronic acid), washing with weak acid, resuspension at neutral pH and freeze drying.
  • alginates for production of alginate oligomers of the invention can also be obtained directly from suitable bacterial sources e.g. Pseudomonas aeruginosa or Azotobacter vinelandii.
  • algal sources are expected to be most suitable on account of the fact that the alginates produced in these organisms tend to have these structures.
  • the bacterial sources may more suitable for obtaining alginate oligomers of different structures.
  • the G content of alginates can be increased by epimerisation, for example with mannuronan C-5 epimerases from A.vinelandii or other epimerase enzymes.
  • epimerisation for example in vitro epimerisation may be carried out with isolated epimerases from Pseudomonas or Azotobacter, e.g. AIgG from Pseudomonas fluorescens or Azotobacter vinelandii or the AIgE enzymes (AIgEI to AlgE7) from Azotobacter vinelandii.
  • AIgG from Pseudomonas or Azotobacter
  • AIgE enzymes AIgEI to AlgE7 from Azotobacter vinelandii.
  • AIgE 4 epimerase can be used to create alginates or alginate oligomers with alternating stretches of M/G sequence or primary structures containing single G residue as it has been found that this enzyme seems preferentially to epimerise individual M residues so as to produce single G residues linked to M residues rather than producing G blocks.
  • Particular primary structures can be obtained by using different combinations of these enzymes.
  • WO 94/09124 describes recombinant or modified mannuronan C-5 epimerase enzymes (AIgE enzymes) for example encoded by epimerase sequences in which the DNA sequences encoding the different domains or modules of the epimerases have been shuffled or deleted and recombined.
  • AIgE enzymes recombinant or modified mannuronan C-5 epimerase enzymes
  • mutants of naturally occurring epimerase enzymes, (AIgG or AIgE) may be used, obtained for example by site directed or random mutagenesis of the AIgG or AIgE genes.
  • a different approach is to create Pseudomonas and Azotobacter organisms that are mutated in some or all of their epimerase genes in such a way that those mutants produce alginates of the required structure for subsequent alginate oligomer production, or even alginate oligomers of the required structure and size (or molecular weight).
  • the generation of a number of Pseudomonas fluoresceins organisms with mutated AIgG genes is described in detail in WO 2004/011628 and Gimmestad, M., et al, 2003 (supra).
  • a further approach is to delete or inactivate the endogenous epimerase genes from an Azotobacter or a Pseudomonas organism and then to introduce one or more exogenous epimerase genes, which may or may not be mutated (i.e. may be wild-type or modified) and the expression of which may be controlled, for example by the use of inducible or other "controllable promoters".
  • exogenous epimerase genes which may or may not be mutated (i.e. may be wild-type or modified) and the expression of which may be controlled, for example by the use of inducible or other "controllable promoters".
  • a still further approach would be to introduce some or all of the alginate biosynthesis machinery of Pseudomonas and/or Azotobacter into a non-alginate producing organism (e.g. E. coll) and to induce the production of alginate from these genetically modified organisms.
  • a non-alginate producing organism e.g. E. coll
  • the primary structure of the alginate or alginate oligomer products can be influenced by the culture conditions. It is well within the capabilities of the skilled man to adjust culture parameters such as temperature, osmolarity, nutrient levels/sources and atmospheric parameters in order to manipulate the primary structure of the alginates produced by a particular organism.
  • references to "G residues/G” and "M residues/M” or to guluronic acid or mannuronic acid, or guluronate or mannuronate are to be read interchangeably as references to guluronic acid/guluronate and mannuronic acid/mannuronate (specifically ⁇ -L-guluronic acid/guluronate and ⁇ -D-mannuronic acid/mannuronate), and further include derivatives thereof in which one or more available side chains or groups have been modified without resulting in activity, specifically microorganism adherence-inhibiting activity, that is substantially lower than that of the unmodified polymer.
  • Common saccharide modifying groups would include acetyl, sulphate, amino, deoxy, alcohol, aldehyde, ketone, ester and anhydro groups.
  • the alginate oligomers may also be chemically modified to add charged groups (such as carboxylated or carboxymethylated glycans), and to alter flexibility (e.g. by periodate oxidation).
  • charged groups such as carboxylated or carboxymethylated glycans
  • the skilled man would be aware of still further chemical modifications that can be made to the monosaccharide subunits of oligosaccharides and these can be applied to the alginates of the invention.
  • microorganism as used herein includes any microbial organism, that is any organism that is microscopic, namely too small to be seen by the naked eye.
  • the term includes the organisms typically thought of as microorganisms, particularly bacteria, fungi, archaea, algae and protists.
  • the term thus particularly includes organisms that are typically unicellular, but which may have the capability of organising into simple cooperative colonies or structures such as filaments, hyphae or mycelia (but not true tissues) under certain conditions.
  • the microorganism may be prokaryotic or eukaryotic, and may be from any class, genus or species of microorganism.
  • prokaryotic microorganisms include, but are not limited to, bacteria, including the mycoplasmas, (e.g. Gram- positive, Gram-negative bacteria or Gram test non-responsive bacteria) and archaeobacteria.
  • Eukaryotic microorganisms include fungi, algae and others that are, or have been, classified in the taxonomic kingdom Protista or regarded as protists, and include, but are not limited to, for example, protozoa, diatoms, protoophyta, and fungus-like molds.
  • the microorganism may be aerobic or anaerobic.
  • the microorganism may be pathogenic or non-pathogenic, or a be spoilage or an indicator microorganism. In particular preferred embodiments the microorganism is pathogenic.
  • microorganism is considered interchangeable with the term “microbe” and any terms such as “microbial” should be interpreted accordingly.
  • the microorganism is not a virus, i.e. is a prokaryote or eukaryote.
  • Bacteria or fungi represent preferred classes of microorganism and accordingly the alginate oligomers may be preferably viewed as having antibacterial or anti-fungal activity.
  • genera or species of bacteria include, but are not limited to, Abiotrophia, Achromobacter, Acidaminococcus, Acidovorax, Acinetobacter, Actinobacillus, Actinobaculum, Actinomadura, Actinomyces, Aerococc ⁇ s, Aeromonas, Afipia, Agrobacterium, Alcaligenes, Alloiococcus, Alteromonas, Amycolata, Amycolatopsis, Anaerobospirillum, Anaerorhabdus, Arachnia, Arcanobacterium, Arcobacter, Arthrobacter, Atopobium, Aureobacterium, Bacteroides, Balneafrix, Bartonella, Bergeyella, Bifidobacterium, Bilophila Branhamella, Borrelia, Bordetell
  • gram-positive bacteria such as, M. tuberculosis, M. bovis, M. typhimurium, M. bovis strain BCG, BCG substrains, M. avium, M. intracellular, M. africanum, M. kansasii, M. marinum, M. ulcerans, M. avium subspecies paratuberculosis, Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus equi, Streptococcus pyogenes, Streptococcus agalactiae, Listeria monocytogenes, Listeria ivanovii, Bacillus anthracis, B.
  • subtilis Nocardia asteroides, Actinomyces israelii, Propionibacterium acnes, Clostridium perfringens, Clostridium tetani, Clostridium botulinum, and Enterococcus species and Gram-negative bacteria such as Pseudomonas aeruginosa, Vibrio cholerae, Actinobacillus pleuropneumoniae, Pasteurella haemolytica, Pasteurella multocida, Legionella pneumophila, Salmonella typhi, Brucella abortus, Coxiella burnetii, Escherichia coli, Neiserria meningitidis, Neiserria gonorrhea, Haemophilus influenzae, Haemophilus ducreyi, Yersinia pestis, Yersinia enterolitica, Escherichia coli, E.
  • Pseudomonas aeruginosa Vibrio
  • Moraxella catarrhalis Klebsiella pneumoniae, Proteus mirabilis, Enterobacter cloacae, Serratia marcescens, Helicobacter pylori, Salmonella enteritidis, Salmonella typhi and Acinetobacter baumannii, Acinetobacter Iwoffi, Providencia stuartii, Providencia rettgeri, Providencia alcalifaciens and Klebsiella oxytoca and Gram non-responsive bacteria such as Chlamydia trachomatis and Chlamydia psittaci.
  • the bacteria are selected from the following genera: Achromobacter, Acinetobacter, Actinobacillus, Aeromonas, Agrobacterium, Alcaligenes, Alteromonas, Bacteroides, Bartonella, Borrelia, Bordetella, Brucella, Burkholderia, Campylobacter, Cardiobacterium, Chlamydia, Chlamydophila, Chromobacterium, Chyseobacterium, Chryseomonas, Citrobacter, Clostridium, Comamonas, Corynebacterium, Coxiella, Cryptobacterium, Edwardsiella, Eikenella, Enterobacter, Enterococcus, Erwinia, Kingella, Klebsiella, Lactobacillus, Lactococcus, Legionella, Leptospira, Leptotrichia, Leuconostoc, Listeria, Listonella, Mobiluncus, Moraxella, Morganella, Mycobacterium, Mycoplasm
  • the bacteria are selected from the genera, Acinetobacter, Klebsiella, Providencia, Pseudomonas and Burkholderia, e.g. the bacteria are from a species selected from Acinetobacter baumannii, Acinetobacter baylyi, Acinetobacter bouvetii, Acinetobacter calcoaceticus, Acinetobacter organizerri, Acinetobacter grimontii, Acinetobacter haemolyticus, Acinetobacter johnsonii, Acinetobacter junii, Acinetobacter Iwoffii, Acinetobacter parvus, Acinetobacter radioresistens, Acinetobacter schindleri, Acinetobacter tandoii, Acinetobacter tjernbergiae, Acinetobacter towneri, Acinetobacter ursingii, Klebsiella granulomatis, Klebsiella oxytoca, Klebsiella pneumoniae, Klebsiella
  • Burkholderia species are of particular note, especially Burkholderia cepacia, Burkholderia multivorans, Burkholderia pseudomallei and Burkholderia mallei; e.g. Burkholderia cepacia.
  • the bacteria may be Gram positive or Gram negative bacteria, or indeed Gram-indeterminate bacteria.
  • Gram-negative bacteria for instance those particularised above, are of importance.
  • the Enterobacteriaceae and the Gram-negative bacteria non-fermenting bacteria are of particular note.
  • Enterobacteriaceae include, but are not limited to, bacteria from the genera Alishewanella, Alterococcus, Aquamonas, Aranicola, Azotivirga, Brenneria, Budvicia, Buttiauxella, Cedecea, Citrobacter, Cronobacter, Dickeya, Edwardsiella, Enterobacter, Erwinia, Escherichia, Ewingella, Grimontella, Hafnia, Klebsiella, Kluyvera, Leclercia, Leminorella, Moellerella, Morganella, Obesumbacterium, Pantoea, Pectobacterium, Phlomobacter, Photorhabdus, Plesiomonas, Pragia, Proteus, Providencia, Rahnella, Raoultella, Salmonella, Samsonia, Serratia, Shigella, Sodalis, Tat ⁇ mella, Trabulsiella, Wigglesworthia, Xenorhabdus, Yersinia,
  • Non-fermenting Gram-negative bacteria include, but are not limited to, bacteria from the genera Pseudomonas, Acinetobacter, Stenotrophomonas and Burkholderia, Achromobacter,-Algaligenes, Bordetella, Brevundimonas, Comamonas, Elizabethkingia (formerly Chryseobacterium), Methylobacterium, Moraxella, Ochrobactrum, Oligella, Psychrobacter, Ralstonia, Roseomonas, Shewanella, Sphingobacterium, e.g. Pseudomonas aeruginosa, Acinetobacter baumannii, Stenotrophomonas maltophilia, and Burkholderia spp..
  • the bacteria may be selected from the genera Pseudomonas, Acinetobacter, Burkholderia, Escherichia, Klebsiella, Streptococcus, Enterococcus, Providencia, Moraxalla, Staphylococcus, e.g. Pseudomonas aeruginosa, Acinetobacter baumannii, Burkholderia spp, E.
  • the microorganism may be a bacteria of the genus Staphylococcus, Pseudomonas, Legionella, Mycobacterium, Proteus, Klebsiella, Fusobacterium or other enteric or coliform bacteria.
  • the microorganism may also be a fungus, including for example fungi that may be, or may have been classified as protista, e.g. a yeast or a mould (e.g. a red mould, a brown mould, a blue-green mould, a slime mould, a water mould), including for example fungi from the genera Candida, Cryptococcus, Histoplasma, Aspergillus, Coccidiodes, Paracoccidiodes, Blastomyces, Pneumocystis, Penicillium, Alternaria and Fusarium.
  • protista e.g. a yeast or a mould (e.g. a red mould, a brown mould, a blue-green mould, a slime mould, a water mould)
  • protista e.g. a yeast or a mould (e.g. a red mould, a brown mould, a blue-green mould, a slime mould, a water mould)
  • fungi
  • Representative fungal species include, but are not limited to, Candida albicans, Candida dubliniensis, Cryptococcus neoformans, Histoplasma capsulatum, Aspergillus fumigatus, Coccidiodes immitis, Paracoccidiodes brasiliensis, Blastomyces dermitidis, Pneumocystis carnii, Penicillium marneffi, Alternaria alternate.
  • the microorganism is not Candida albicans or Candida dubliniensis.
  • the microorganism is not from the genus Candida.
  • the microorganism is not a yeast.
  • the microorganism may also be an, or from an, algae, including for example algae that may be, or may have been classified as protista.
  • Representative algal species include Chaetophora, Chlorella protothecoides, Coleochaete scutata, Coleochaete soluta, Cyanidioschyzon merolae Aphanochaete, Gloeotaenium, Oedogonium, Oocystis, Oscillatoria, Paradoxia multisitia, Phormidium, Chroococcus; Aphanothece, Fragillaria, Cocconis, Navicula, Cymbella, Phaeodactylum as well as cyanobacteria (blue-green algae) and diatoms such as Nitzschia palea.
  • the microorganism may also be a protozoa, e.g. a member of the groups Amoebae, Sporozoa, Ciliates, and Flagellates.
  • Representative protozoa include Toxoplasma species e.g. Toxoplasma gondii; Plasmodium species such as Plasmodium falciparum; Plasmodium vivax, Plasmodium malariae; Trypanosoma species e.g. Trypanosoma brucei, Trypanosoma cruzil; Leishmania species such as Leishmania major, and Entamoeba species such as Entamoeba histolytica.
  • the microorganism is selected from following genera: Citrobacter, Enterobacter, Escherichia, Hafnia, Serratia, Yersinia, Peptostreptococcus, Bacteriodes, Pseudomonas, Legionella, Staphylococcus, Enterococcus, Streptococcus, Klebsiella, Candida, Proteus, Burkholderia, Fusobacterium and Mycobacterium, for instance, Staphylococcus aureus, Staphylococcus epidermidis, Legionella pneumophila, Candida albicans, Pseudomonas aeruginosa, Burkholderia cepacia and Streptococcus Pyogenes.
  • adherence it is meant a stable and persistent interaction (i.e. not a transient interaction) between a microorganism and a surface that results in the microorganism maintaining a position in proximity to the surface.
  • Adherence of a microorganism to a surface typically involves two stages. The first is a non-specific process whereby the components of the exterior of the microorganism interact with the surface through non-specific weak molecular forces such as hydrophobic interactions, electrostatic interactions, hydrogen bonding, and Van der Waals forces. The strength of these interactions will depend on the chemical nature of the components of the exterior of the microorganism and the surface.
  • the weak forces result in the microorganism persisting at a location in proximity to the surface.
  • This interaction may be sufficiently stable to be considered adherence.
  • disruption of these nonspecific forces and therefore disruption of the interaction between the microorganism and that surface can occur relatively easily.
  • the surface also has molecules complementary to molecules on the exterior of the microorganism, specific molecular interactions can take place. These interactions are more intimate and therefore stronger. Accordingly, once a microorganism has engaged with the surface in this way, disruption of those interactions is more difficult and less likely to occur. Such interactions are more likely to give rise to the stable and persistent interactions characteristic of adherence but attachment through nonspecific interactions can often be sufficient to cause adherence. In some instances the specific interactions will occur concomitantly with the formation of the weak nonspecific interactions.
  • microorganisms will upregulate or initiate expression of molecules on or in its exterior (e.g. proteins, polysaccharides, lipids) that will be able to engage in a specific interaction with molecules on or making up the surface. This is especially the case when the surface is biotic.
  • molecules on or in its exterior e.g. proteins, polysaccharides, lipids
  • adhesins also known as adherence factors.
  • Representative examples include, but are not limited to, filamentous hemagglutinin, fimbriae, the glycocalyx, lectins, pili, the S-layer, slime, teichoic acids and lipoteichoic acids.
  • the molecules to which adhesins bind include, but are not limited to, saccharides (e.g. D-mannose, galactose, sialic acid), proteins (e.g. fibropectin), and lipids (e.g. ceramide).
  • alginate oligomers interfere with these adherence mechanisms, e.g. by physically preventing the weak non-specific and/or the stronger specific interactions from forming or breaking up existing interactions by competing for binding sites on the surface and/or on the microorganism.
  • inhibiting adherence it is meant that the adherence of a non-adhered microorganism to a surface, that may or may not already have one or more microorganisms adhered thereto, is prevented or reduced, or the microorganism is not able to adhere as strongly and/or as stably.
  • inhibittion also covers a reduction in the numbers of or the rate at which non-adhered microorganisms adhere to a surface. In one embodiment the rate or number of non-adhered microorganisms adhering to a surface is reduced by at least 50%, at least 60%, at least 70%, at least 80%, at least 85%, at least 95% or at least 99%.
  • the rate or number of non-adhered microorganisms adhering to a surface is reduced by 100%.
  • the adherence per se of non-adhered microorganisms to a surface is essentially, preferably substantially, e.g. completely, prevented.
  • Inhibition of adherence includes also disruption of adherence.
  • disruption of adherence By this is meant the dislodgement of a microorganism that has adhered to a surface or a reduction in the strength or stability of the adherence of the microorganism to the surface.
  • at least 50%, at least 60%, at least 70%, at least 80%, at least 85%, at least 90%, at least 95% or at least 99% of the microorganisms adhered to a surface are dislodged from the surface.
  • 100% of the microorganisms adhered to a surface are dislodged, i.e. substantially all, essentially all or completely all adhered microorganisms are dislodged from the surface.
  • the adherence of a population of microorganisms to a surface is not a static process and the numbers of adhered microorganisms observed at any moment is in fact a representation of the dynamic state of the system.
  • a reduction of the numbers of microorganisms adhered to a surface may be a function of the disruption of adherence and/or the inhibition of adherence of microorganisms joining or rejoining the population.
  • the method of the invention it may be convenient to consider the method of the invention as a method to control the numbers of microorganisms on a surface.
  • the alginate oligomers can be used to reduce the number of-microorganisms adhered to a surface, preferably the number of microorganisms adhered to a surface is reduced by at least 50%, at least 60%, at least 70%, at least 80%, at least 85%, at least 90%, at least 95%, at least 99% e.g. 100%.
  • the surface will be rendered substantially free, essentially free, or completely free of adhered microorganisms by treatment with the alginate oligomers of the invention.
  • Such functionality enables the method of the invention to be used to control the growth of microorganism populations on a surface and to combat contamination of a surface.
  • the method of the invention can prevent the contamination (i.e. maintain sterility) or decontaminate a surface.
  • Adherence of microorganisms to a surface can be followed by any convenient means and many routine approaches are available.
  • a common approach is to label microorganisms as this allows easy calculation of the numbers of microorganisms adhered to a surface at a given time. Changes in these numbers gives vital information about the impact a treatment is having on adherence.
  • the strength or stability of the adherence of microorganisms to surfaces can also be followed by calculating microorganism numbers before and after treatments designed to physically or chemically dislodge adhered microorganisms, e.g. washing techniques (with or without pressure or raised temperature) or washing with solutions of elevated salt concentrations or extremes of pH.
  • the adherence of a microorganism to a surface can also be measured at a molecular level by detecting the formation/disruption of the interactions between the microorganism and the surface.
  • Tools to measure the binding of two or more molecular entities e.g. bispecific antibodies are available and can be prepared without undue burden.
  • Differential labelling of adhered and non-adhered microorganisms allows the adherence of non-adhered microorganisms and the dislodgement of adhered microorganisms to be monitored.
  • Differential labelling strategies in particular by targeting specific microbial components, can be easily devised to yield additional information.
  • Suitable labels include, but are not limited to, fluorescent dyes/proteins, luminescent dyes/enzymes, colorimetric dyes/enzymes, radioactive labels, and antibodies and other binding proteins linked to these labels.
  • Suitable detection means for these labels will be familiar to the skilled man. Radiolabels can for instance be detected with X-ray film or scintillation counters.
  • Colorimetric, luminescent or fluorescent labels can be detected and may be quantified visually, typically with the aid of a microscope, or mechanically e.g. by fluorescent activated cell sorting (FACS), flow cytometry, or mechanical automatic cell counters. Methods in which quantitative data are obtained are preferred.
  • FACS fluorescent activated cell sorting
  • flow cytometry flow cytometry
  • mechanical automatic cell counters Methods in which quantitative data are obtained are preferred.
  • microorganism labels include, but are not limited to, propidium iodide, ethidium bromide, Gram stain, Giemsa stain, SYBR green, haemotoxilin, DAPI, eosin, acridine orange, rhodamine, FM® 1-43, SYT09 crystal violet, and microorganism binding proteins (e.g. antibodies) labelled with FITC, GFP, YFP, GFP, alkaline phosphatase, horseradish peroxidase, luciferase or ⁇ - galactosidase, heavy metals e.g. silver, gold, tungsten and salts thereof.
  • microorganism binding proteins e.g. antibodies
  • the method of the invention is the adherence of live prokaryotic or eukaryotic microorganisms that is inhibited or disrupted as such microorganisms are capable of leading to disease, spoilage, pollution or other detrimental actions.
  • the disruption or inhibition of the adherence of dead (nonviable) prokaryotic or eukaryotic microorganisms may also be desirable as such entities can still be immunogenic or associated with toxins and other molecules associated with disease, food spoilage, pollution or other detrimental actions.
  • a microorganism is considered to be alive if it can be induced to grow and replicate, or at least display morphological changes, when placed in a medium that would normally support the growth of that microorganism and/or the microorganism is metabolising nutrients to release energy to support cellular functions.
  • a microorganism can be considered to be dead if Cell membrane integrity is lost.
  • microorganisms are alive or dead.
  • One option is to place the microorganism in conditions that would normally support the growth of that microorganism and monitor the growth of the microorganism by appropriate standard means, e.g. by monitoring the size of the microorganism, the morphology of the microorganism, the number of microorganisms in the colony over time, the consumption of nutrients in the culture media, etc.
  • Another option is to measure the metabolism of the microorganism. This can be done routinely in a number of ways. For instance the levels of ATP can be measured. Only living cells with intact membranes can synthesise ATP and, because ATP is not stored in cells, levels of ATP drop rapidly upon cell death. Monitoring ATP levels therefore gives an indication of the status of the microorganism.
  • a yet further option is to measure the reducing potential of the cell. Viable microorganisms metabolising nutrients use reducing reactions, by applying a marker that gives different outputs whether in reduced or oxidised form (e.g. a fluorescent dye) to the microorganism, the microorganism's reducing potential can be assessed. • Microorganisms that lack the ability to reduce the marker can be considered to be dead. The MTT and MTS assays are convenient examples of this type of assay.
  • Another option is to assess the microorganism for morphologies characteristic of cell death, e.g. necrotic or apoptotic bodies, membrane blebs, nuclear condensation and cleavage of DNA into regularly sized fragments, ruptured cell walls or membranes and leakage of cell contents into the extracellular environment.
  • Membrane impermeable dyes e.g. trypan blue and propidium iodide
  • these dyes are excluded from intact microorganisms and so no staining occurs in such microorganisms. If cell membrane integrity is compromised, these dyes can access the microorganism and stain intracellular components. Alternatively, or in addition, dyes that only stain microorganisms with intact membranes are used to give an indication of the viability of the cell.
  • the Live/Dead Assay of Invitrogen Ltd is an assay that uses two dyes, one to stain dead cells, the other to stain live cells. If these types of dyes are chosen as the labels for microorganisms discussed above the data obtained contains information about the adherence of live (and dead) microorganisms.
  • growth of a microorganism is meant an increase in the size of the microorganism or in the amount and/or volume of the constituents of the microorganism (e.g. the amount of nucleic acid, the amount of protein the number of nuclei, the numbers or size of organelles, the volume of cytoplasm) or an increase in the numbers or a microorganism i.e. an increase in the replication of an organism.
  • growth of a microorganism is accompanied by the enlargement of the microorganism.
  • the growth of microorganisms can be measured with routine techniques. For instance, microscopic examination of cell morphology over time, or assays to measure changes in the quantities of protein or nucleic acid (e.g.
  • DNA in general, or the changes in the quantities of specific proteins or nucleic acids, can be used.
  • suitable markers e.g. ⁇ -actin, GAPDH (glyceraldehyde 3-phosphate dehydrogenase), SDHA (succinate dehydrogenase), HPRT1 (hypoxanthine phosphoribosyl transferase 1), HBS1L (HBS1-like protein), AHSP (alphahaemoglobin stabilising protein), and ⁇ -2M (beta-2-microglobulin)), 16S RNA, and their expression products can be monitored.
  • house keeping genes e.g. ⁇ -actin, GAPDH (glyceraldehyde 3-phosphate dehydrogenase), SDHA (succinate dehydrogenase), HPRT1 (hypoxanthine phosphoribosyl transferase 1), HBS1L (HBS1-like protein), AHSP (alphahaemoglobin stabilising
  • replication of a microorganism it is meant the act by which a microorganism reproduces. In the case of a microorganism this is typically by binary fission where a cell divides into two, but can also be by budding mechanisms where multiple progeny can arise from a cell. To support the division of the microorganism cell into two, binary fission is normally preceded by enlargement of the dividing microorganism and an increase in the amount and/or volume of cellular constituents. Replication results in an increase in the number of cells and so may be followed by any method of assessing microorganism numbers in a population. Another option is to follow the process in real time by visual examination with a microscope. The time it takes for a cell to replicate (i.e. produce another version of itself) is the generation time. Generation time will depend on the type of microorganism, its mode of replication and the conditions in which the microorganism is found. The rate of replication can be expressed in terms of the generation time.
  • Another method of determining the amount of live cells adhered to a surface at any one time is to use the Miles-Misra method to calculate the number of colony forming units (CFU's) that can be obtained from the surface.
  • CFU's colony forming units
  • contacting encompasses any means of delivering the alginate oligomer to the surface and/or the microorganism, whether directly or indirectly, and thus any means of applying the alginate oligomer to the surface and/or the microorganism or exposing the surface and/or microorganism to the alginate oligomer, e.g. applying the alginate oligomer directly to the surface and/or microorganism, or administering the alginate oligomer to a subject within which or on which the surface and/or microorganism is present, e.g. subjects with a microbial infection of a body surface or location underlying a body surface accessible to a microorganism through the surface, may be used.
  • the surface that is treated with the oligomers of the invention.
  • the surface is pretreated with the alginate oligomer before exposure to microorganisms or at least prior to a new or further exposure to microorganisms, e.g. at least 6 hours, at least 4 hours, at least 2 hours, at least 1 hour or at least 30 minutes, e.g. immediately before the exposure.
  • the surface will comprise the alginate oligomer (e.g. as a coating or an integral part thereof).
  • the surface and/or microorganism will be contacted with an effective amount of the alginate oligomer, more particularly an amount of the alginate oligomer effective to inhibit the adherence of the microorganism to the surface.
  • an "effective amount" of the alginate oligomer is that amount of alginate oligomer that results in the inhibitory effects described above.
  • the skilled man would easily be able to determine what an effective amount of alginate oligomer would be on the basis of routine dose response protocols and, conveniently, the routine techniques for assessing inhibition of microorganism adherence discussed above.
  • the surface is only limited in so far as it is a surface on which or to which a microorganism may adhere.
  • the surface will be solid, semisolid, a gel or a gel sol.
  • the surface will not be the surface of a liquid.
  • the surface may be biotic or abiotic, and inanimate (or abiotic) surfaces include any such surface which may be exposed to microorganism contact or contamination.
  • particularly included are Surfaces on machinery, notably industrial machinery, or medical equipment or any surface exposed to an aquatic environment (e.g. marine equipment, or ships or boats or their parts or components), or any surface exposed to any part of the environment, e.g. pipes or on buildings.
  • Such inanimate surfaces exposed to microorganism contact or contamination include in particular any part of: food or drink processing, preparation, storage or dispensing machinery or equipment, air conditioning apparatus, industrial machinery, e.g. in chemical or biotechnological processing plants, storage tanks, medical or surgical equipment and cell and tissue culture equipment.
  • the surface is a cell culture plate.
  • Any apparatus or equipment for carrying or transporting or delivering materials is susceptible to microbiological/microbial contamination.
  • Such surfaces will include particularly pipes (which term is used broadly herein to include any conduit or line).
  • Representative inanimate or abiotic surfaces include, but are not limited to food processing, storage, dispensing or preparation equipment or surfaces, tanks, conveyors, floors, drains, coolers, freezers, equipment surfaces, walls, valves, belts, pipes, air conditioning conduits, cooling apparatus, food or drink dispensing lines, heat exchangers, boat hulls or any part of a boat's structure that is exposed to water, dental waterlines, oil drilling conduits, contact lenses and storage cases.
  • medical or surgical equipment or devices represent a particular class of surface on which microbial contamination may form.
  • This may include any kind of line, including catheters (e.g. central venous and urinary catheters), prosthetic devices e.g., heart valves, artificial joints, false teeth, dental crowns, dental caps and soft tissue implants (e.g. breast, buttock and lip implants).
  • prosthetic devices e.g., heart valves, artificial joints, false teeth, dental crowns, dental caps and soft tissue implants (e.g. breast, buttock and lip implants).
  • Any kind of implantable (or "in-dwelling") medical device is included (e.g. stents, intrauterine devices, pacemakers, intubation tubes (e.g. endotracheal or tracheostomy tubes), prostheses or prosthetic devices, lines or catheters).
  • An "indwelling" medical device may include a device in which any part of it is contained within the body, i.e. the device may be wholly or partly in
  • the surface can be made of any material.
  • it may be metal, e.g. aluminium, steel, stainless steel, chrome, titanium, iron, alloys thereof, and the like.
  • the surface can also be plastic, for example, polyolefin (e.g., polyethylene, (Ultra- High Molecular Weight) polyethylene, polypropylene, polystyrene, poly(meth)acrylate, acrylonitrile, butadiene, ABS, acrylonitrile butadiene, etc.), polyester (e.g., polyethylene terephthalate, etc.), and polyamide (e.g., nylon), combinations thereof, and the like.
  • polyolefin e.g., polyethylene, (Ultra- High Molecular Weight) polyethylene, polypropylene, polystyrene, poly(meth)acrylate, acrylonitrile, butadiene, ABS, acrylonitrile butadiene, etc.
  • polyester e.g., polyethylene terephthalate
  • acetal copolymer polyphenylsulfone, polysulfone, polythermide, polycarbonate, polyetheretherketone, polyvinylidene fluoride, poly(methyl methacrylate) and poly(tetrafluoroethylene).
  • the surface can also be brick, tile, ceramic, porcelain, wood, vinyl, linoleum, or carpet, combinations ⁇ thereof, and the like.
  • the surfaces can also be food, for example, beef, poultry, pork, vegetables, fruits, fish, shellfish, combinations thereof, and the like.
  • a biotic or animate surface may include any surface in or on an animal, plant or fungal body. It may accordingly be viewed as a "physiological" or “biological” surface. It may be any internal or external body surface, including of any tissue or organ. Dead or dying (e.g. necrotic) or damaged (e.g. inflamed or disrupted or broken) tissue is particularly susceptible to microbiological contamination, and such tissue is encompassed by the term "animate” or "biotic”.
  • the surface may be a mucosal or non-mucosal surface. Representative biotic surfaces include, but are not limited to, any surface in the oral cavity (e.g. teeth, gingiva, gingival crevice, periodontal pocket) the reproductive tract (e.g.
  • cervix uterus, fallopian tubes
  • the peritoneum middle ear, prostate, urinary tract, vascular intima, eye, i.e. ocular tissue (e.g. the conjunctiva, corneal tissue, lachrymal duct, lachrymal gland, eyelid) the respiratory tract, lung tissue (e.g. bronchial and alveolial), heart valves, gastrointestinal tract, skin, scalp, nails and the interior of wounds, particularly chronic wounds and surgical wounds, which may be topical or internal wounds.
  • ocular tissue e.g. the conjunctiva, corneal tissue, lachrymal duct, lachrymal gland, eyelid
  • lung tissue e.g. bronchial and alveolial
  • heart valves gastrointestinal tract, skin, scalp, nails and the interior of wounds, particularly chronic wounds and surgical wounds, which may be topical or internal wounds.
  • transplant tissues/organs may be treated with the alginate oligomers of the invention prior to implantation to prevent or reduce microbial contamination of the tissues/organs through the inhibition or disruption of the adherence of microorganisms to the tissues/organs.
  • the surface will not be mucosal, or more particularly will not have a hyperviscous mucus coating.
  • the skilled person will be able to determine when the mucus at a given surface is hyperviscous.
  • the surface will not be the surface of a mucus-secreting tissue. More particularly in such an embodiment the surface will not be the surface of a mucus-coated tissue.
  • the skilled person will know from his common general knowledge the tissues that secrete mucus and those that are mucus-coated.
  • the surface will not be the surface of the intestinal tract or the surface of an established or partially established biofilm.
  • the microorganism will not be in a biofilm. Put differently, the microorganism will not be in a biofilm mode of growth; or will be in a non-biofilm mode of growth.
  • biofilm it is meant a community of microorganisms characterized by a predominance of sessile cells that are attached to a substratum or interface or to each other (some motile cells may also be present) and that are embedded in a matrix of extracellular polymers (more specifically extracellular polymers that they have produced) characterised in that the microorganisms of this colony exhibit an altered phenotype with respect to growth rate and gene transcription (for example as compared to their "non-biofilm” or free-floating or planktonic counterparts).
  • in a biofilm it is meant that the microorganism is within (completely or in part), on or associated with the polymer matrix of a biofilm.
  • microorganisms that are "not in a biofilm” are microorganisms that are either in isolation, e.g. planktonic, or if in an aggregation of a plurality of microorganisms, that aggregation is unorganised and/or is devoid of the matrix characteristic of a biofilm. In each case, the individual microorganisms do not exhibit an altered phenotype that may be observed in their biofilm dwelling counterparts.
  • alginate oligomers of the invention i.e. those described above, have medical and non-medical applications.
  • the invention provides a method for inhibiting the adherence of a microorganism to a surface in a subject, said method comprising administering .a pharmaceutically effective amount of an alginate oligomer (which may be any alginate oligomer as herein defined) to a subject in need thereof.
  • the step of administering the alginate oligomer may result in the surface and/or the microorganism contacting the alginate oligomer, or may cause the surface and/or the microorganism to contact the alginate oligomer.
  • an alginate oligomer for use in inhibiting the adherence of a microorganism to a surface in a subject.
  • this aspect provides the use of an alginate oligomer for the manufacture of a medicament for inhibiting the adherence of a microorganism to a surface in a subject.
  • aspects of the invention can also be seen to provide an alginate oligomer for use in combating, and in particular in the treatment of, microbial infection of a surface in an subject, or the use of an alginate oligomer in the manufacture of a medicament for use in combating, and in particular in the treatment of, microbial infection of a surface in a subject. It will be seen in this aspect that the infection may be combated by inhibiting the adherence of a microorganism to a surface in a subject.
  • the sgbject may be any human or non-human animal subject, but more particularly may be a vertebrate, e.g. an animal selected. from mammals, birds, amphibians, fish and reptiles.
  • the animal may be a livestock or a domestic animal or an animal of commercial value, including laboratory animals or an animal in a zoo or game park. Representative animals therefore include dogs, cats, rabbits, mice, guinea pigs, hamsters, horses, pigs, sheep, goats, cows, chickens, turkeys, guinea fowl, ducks, geese, parrots, budgerigars, pigeons, salmon, trout, cod, haddock, sea bass and carp.
  • the subject may be viewed as a patient.
  • the subject is a human.
  • the term "in a subject” is used broadly herein to include locations inside a subject or on a subject, e.g. an external body surface.
  • the method of this aspect of the invention may comprise a step in which the subject will be diagnosed as a candidate that would benefit from having the adherence of a microorganism to a surface in it inhibited.
  • the method of the invention may further comprise a step in which the microorganism to be targeted by the treatment will be determined as not being in a biofilm.
  • alginate oligomers to inhibit the adherence of a microorganism to a surface makes them suited to the combat of microorganism populations, including non-biofilm populations of microorganisms.
  • Populations on a surface can be combated directly and populations at locations underlying a surface that arise as a consequence of the presence of a microorganism population on the surface, may be combated indirectly by the effects exerted on the surface or surface population.
  • the methods and uses of the present invention to inhibit microbial adherence may be used to combat a population of microorganisms on a surface, or at a location underlying a surface.
  • a method of combating a population of microorganisms would comprise contacting said surface and/or microorganisms with an alginate oligomer as defined herein.
  • the surface and/or microorganisms will be contacted with an amount of the alginate oligomer effective to inhibit and/or disrupt the adherence of the microorganisms to the surface.
  • the microorganisms or the population " thereof will not be in a biofilm or will not be in the process of forming a biofilm.
  • the microorganisms or the population thereof will not be capable of biofilm formation or the plurality of microorganisms in the population are not of sufficient number or at a lifecycle stage that permits biofilm formation.
  • a population of microorganisms is considered to be at least 1000 cells, e.g. at least 10 5 , 10 6 , 10 7 , 10 8 or 10 9 microorganisms.
  • the population of microorganisms may be homogenous (i.e. contain a single type of microorganism) or may be heterogeneous (i.e. contain a plurality of types of microorganisms). For example, any or all of the various microorganisms described above may be found in the population. Preferably some or all of the microorganisms in the population will be pathogenic.
  • the population may be an established population or be a partially established population. In other words the surface to be treated has previously been colonised by at least one microorganism that has multiplied or recruited other microorganisms to establish the population.
  • control the growth of a population it is meant that the rate of expansion of the overall number of cells in the population is reduced.
  • the rate of expansion is reduced by at least 50%, more preferably at least 75%, 85%, 95% or 99%.
  • the expansion is essentially stopped or reversed, i.e. the overall number of cells in the population is maintained or reduced.
  • overall number of live (or viable) cells in the population is reduced by at least 50%, more preferably at least 75%, 85%, 95% or 99%.
  • the population is substantially or completely eradicated. By substantially eradicated it is meant that the population contains few, or virtually no live (or viable) microorganisms.
  • the term "prevent the formation of a population” covers the prevention of the adherence of microorganisms to a surface and also the prevention of a small number (sub-population number) of adhered microorganisms from expanding to reach population size, e.g. by inhibiting the adherence of further microorganisms to the surface or by disrupting the adherence of microorganisms that are already adhered.
  • the surface is not restricted and may be any surface to which, or on which, microorganisms adhere.
  • the various surfaces described above apply here also.
  • the location underlying a surface will be a location that is accessible to the microorganisms through a surface and that can support (i.e. is susceptible to) microbial invasion.
  • the surface and the location underlying the surface might be formed from a material that is porous or permeable or that can be compromised by a microorganism.
  • Objects formed from biotic materials e.g. tissues and organs
  • meet these functional requirements although permeable, porous and compromisable abiotic objects also exist, e.g. certain stones, ceramic, porcelain, cement mortar, grout, paint films, filters, food and biodegradable materials.
  • the location will typically be in the immediate vicinity of a surface, but the location may also be a greater distance away if the material underlying the surface permits, or can be induced to permit, the migration of the microorganisms through it.
  • the invention provides a method to combat a population of microorganisms on a surface, or at a location underlying a surface, in a subject, said method comprising administering a pharmaceutically effective amount of an alginate oligomer (which may be any alginate oligomer as herein defined) to a subject in need thereof.
  • the step of administering the alginate oligomer may result in the contacting of the surface and/or the microorganism with the alginate oligomer, or may cause the surface and/or the microorganism to contact the alginate oligomer'
  • an alginate oligomer for use in combating a population of microorganisms on a surface, or at a location underlying a surface, in a subject.
  • this aspect provides the use of an alginate oligomer for the manufacture of a medicament for combating a population of microorganisms on a surface, or at a location underlying a surface, in a subject.
  • the method of this aspect of the invention may comprise a step in which the subject will be diagnosed as a candidate that would benefit from having a population of microorganisms on a surface, or at a location underlying a surface, combated.
  • the method of the invention may further comprise a step in which the population of microorganisms to be targeted by the treatment will be determined as not being, or in, a biofilm.
  • the invention provides a method for combating contamination of a surface, or at a location underlying a surface, by a microorganism said method comprising contacting the surface and/or the microorganism with an alginate oligomer.
  • the surface and/or microorganism will be contacted with an effective amount of the alginate oligomer, more particularly an amount of the alginate oligomer sufficient to inhibit and/or disrupt the adherence of the microorganism to the surface.
  • “Combating contamination” includes both preventative and reactionary measures or treatments and therefore covers the prevention as well as the reduction, limitation, or elimination of contamination of a surface/location.
  • contamination it is meant the unwanted presence of a microorganism at a particular surface/location. In abiotic surfaces/locations this can be considered at its extreme to refer to the presence of any microorganism at the surface/location.
  • contamination can be considered to cover colonisation of a surface/location by the microorganism, i.e. the establishment of a microorganism at a surface/location and the expansion of the numbers of that microorganism by replication or the recruitment of additional microorganisms, which may be of the same or of a different type. In one embodiment the colonisation process will not involve the formation of a biofilm.
  • the microorganism can be any of the microorganisms described above. In one embodiment of this aspect the microorganism is not in a biofilm.
  • the contamination or potential contamination may be on any surface to which, or on which, microorganisms may adhere or any location underlying such a surface that is accessible to the microorganisms through the surface and that can support microbial invasion.
  • the contamination can be in vitro or in vivo.
  • the surface or location may be in a subject and in which case a therapeutically effective amount of the alginate oligomer is administered to the subject.
  • the method of this aspect of the invention may comprise a step in which the subject will be diagnosed as a candidate that would benefit from having contamination at a surface or a location underlying a surface in it combated.
  • the method of this aspect of the invention may further comprise a step in which the contaminating microorganism to be targeted by the treatment will be determined as not being, or in, a biofilm.
  • Alginate oligomers for use in such methods and the use of alginate oligomers in the manufacture of medicaments for use in such methods are also provided.
  • this aspect of the invention can be applied to the decontamination of clinical, scientific and industrial waste materials of microbiological contaminants.
  • this aspect of the invention can be used to decontaminant transplant tissue (e.g. heart, lungs, kidney, liver, heart valve, pancreas, intestine, arterial and venous grafts and skin) prior to implantation.
  • the invention provides a method for combating the infection of a surface or a location underlying a surface in a subject, said method comprising administering a pharmaceutically effective amount of an alginate oligomer to a subject in need thereof.
  • Alginate oligomers for use in such treatments and the use of alginate oligomers in the manufacture of a medicament for use in such treatments are also provided.
  • the infection may be of any surface in the subject to which, or on which, a microorganism may adhere or any location underlying a surface in the subject that is accessible to the microorganism through the surface and that can support microbial invasion.
  • the infection may be of any of the surfaces or any of the locations underlying a surface within an subject described above.
  • the infection may be in the tissues or parts of the tissue of the subject underlying the surfaces mentioned above as invasion of the tissue can occur after attachment of the microorganisms to the surface of a tissue.
  • Administering the alginate to the subject preferably results in the surface of the subject's tissue being contacted with an alginate oligomer in an amount sufficient to inhibit and/or disrupt the adherence of the microorganism to the surface of the subject's tissues
  • Particular tissues may be targeted by employing targeted drug delivery methods.
  • the microorganism can be any of the microorganisms, e.g. bacteria, fungi or protozoa described above although bacteria are of note.
  • the infection may a pathogen infection e.g. a bacterial or fungal pathogen.
  • the infection may be caused by bacteria from the following genera: Achromobacter, Acinetobacter, Actinobacillus, Aeromonas, Agrobacterium, Alcaligenes, Alteromonas, Bacteroides, Bartonella, Borrelia, Bordetella, Brucella, Burkholderia, Campylobacter, Cardiobacterium, Chlamydia, Chlamydophila, Chromobacterium, Chyseobacterium, Chryseomonas, Citrobacter, Clostridium, Comamonas, Corynebacterium, Coxiella, Cryptobacterium, Edwardsiella, Eikenella, Enterobacter, Enterococcus, Erwinia, Kingella, Klebsiella, Lactobacillus, Lactococcus, Legionella, Leptospira, Leptotrichia, Leuconostoc, Listeria, Listonella, Mobilun
  • Pseudomonas e.g. Pseudomonas a
  • the infection is not an infection by Candida albicans or Candida dubliniensis. In one embodiment the infection is not a Candida infection. In another embodiment the infection is not a yeast infection.
  • the infection may be acute, or alternatively chronic, e.g. an infection that has persisted for at least 5 or at least 10 days, particularly at least 20 days, more particularly at least 30 days, most particularly at least 40 days.
  • the infection may occur on a surface in or on the subject (i.e. a biotic surface as discussed above) and/or a surface of a medical device, particularly an implantable or "in-dwelling" medical device, representative examples of which are discussed above.
  • the microorganism is not in a biofilm and the infection will not be or involve a biofilm (the infection can therefore be considered to be a non-biofilm infection).
  • the method of this aspect of the invention may comprise a step in which the subject will be diagnosed as a candidate that is at risk of developing an infection at a surface or at a location underlying a surface in it or would benefit from having an infection at a surface or at a location underlying a surface in it treated.
  • the method of this aspect of the invention may further comprise a step in which the infection to be targeted by the treatment will be determined as not being, or involving, a biofilm (i.e. a non-biofilm infection).
  • An infection can occur in any subject but some subjects will be more susceptible to infection than others.
  • Subjects who are susceptible to infection include, but are not limited to, subjects whose epithelial and/or endothelial barrier is weakened or compromised, subjects whose secretion-based defences to microorganism infection have been abrogated, disrupted, weakened or undermined, and subjects who are immunocompromised, immunodeficient or immunosuppressed (i.e. a subject in whom any part of the immune system is not working normally, or is working sub-normally, in other words in whom any part of the immune response, or an immune activity is reduced or impaired, whether due to disease or clinical intervention or other treatment, or in any way).
  • subjects who are susceptible to infection include, but are not limited to, subjects with a pre-established infection (e.g. with bacteria, viruses, fungi or parasites such as protozoa), especially subjects with HIV, subjects with sepsis and subjects with septic shock; subjects with immunodeficiency, e.g. subjects preparing for, undergoing or recovering from chemotherapy and/or radiotherapy, organ (e.g. bone marrow, liver, lung, heart, heart valve, kidney, etc.) transplant subjects (including autograft, allograft and xenograft patients), subjects with AIDS; subjects resident in a healthcare institution, e.g. hospital, especially subjects in intensive care or critical care (i.e.
  • mucous, tears, saliva and/or secretion clearance
  • subjects with poorly functioning cilia on mucosal tissue and/or patients with hyperviscous mucous e.g. smokers and subjects with COPD, COAD, COAP, bronchitis, cystic fibrous, emphysema, lung cancer, asthma, pneumonia or sinusitis
  • subjects fitted with a medical device e.g. subjects with poorly functioning cilia on mucosal tissue and/or patients with hyperviscous mucous (e.g. smokers and subjects with COPD, COAD, COAP, bronchitis, cystic fibrous, emphysema, lung cancer, asthma, pneumonia or sinusitis)
  • subjects fitted with a medical device e.g. subjects with poorly functioning cilia on mucosal tissue and/or patients with hyperviscous mucous (e.g. smokers and subjects with COPD, COAD, COAP, bronchitis, cystic fibrous, emphyse
  • subjects in whom infections may particularly be combated according to the present invention include patients who are impaired, whether due to poor perfusion, repetitive trauma, poor nutrition, poor oxygenation or white cell dysfunction.
  • Trauma refers broadly to cellular attacK by foreign bodies and/or physical injury of cells. Included among foreign bodies are microorganisms, particulate matter, chemical agents, and the like. Included among physical injuries are mechanical injuries; thermal injuries, such as those resulting from excessive heat or cold; electrical injuries, such as those caused by contact with sources of electrical potential; and radiation damage caused, for example, by prolonged, extensive exposure to infrared, ultraviolet or ionizing radiations.
  • any burn in particular a severe burn, has a significant impact on the integrity of the epithelial and/or endothelial barrier of the subject and the subject will often become immunocompromised in response to the burn (a shock response).
  • Typical bum-causing agents are extremes of temperature (e.g. fire and liquids and gases at extreme temperature), electricity, corrosive chemicals, friction and radiation.
  • Scalding i.e. trauma associated with high temperature liquids and/or gases is considered to be a burn.
  • Epidermal burn severity is commonly classified in two ways. Most common is the classification by degree. First-degree burns are usually limited to erythema (redness) in the general area of the injury and a white plaque at the site of injury. The cellular trauma of these burns extends only as deep as the epidermis. Second- degree burns also display erythema in the general area of the injury but with superficial blistering of the epidermis. The cellular trauma of second-degree burns involves the superficial (papillary) dermis and may also involve the deep (reticular) dermis layer. Third-degree burns are those in which the epidermis is lost with damage to the hypodermis. Damage is typically extreme including charring.
  • eschar dry, black necrotic tissue
  • Third-degree burns may require grafting.
  • fourth-degree burns catastrophic damage of the hypodermis occurs, e.g. the hypodermis is completed lost, with damage extending to the underlying muscle, tendon, and ligament tissue. Charring and eschar are observed. Grafting is required if the"burn does not prove to be fatal.
  • “Superficial thickness” burns correspond to first degree burns.
  • the spectrum of second degree burns is covered by two classes of “partial thickness” burns.
  • “Partial thickness-superficial” are burns that affect the epidermis only as far as the papillary dermis.
  • “Partial thickness-deep” are burns that affect the dermis as far as the reticular dermis.
  • “Full thickness” burns correspond to third and fourth degree burns.
  • a wound may be considered to be a breach in, or denudement of, a tissue.
  • Wounds may also be caused by a spontaneously forming lesion such as a skin ulcer (e.g. a venous, diabetic or pressure ulcer), an anal fissure or a mouth ulcer.
  • Wounds are typically defined as either acute or chronic.
  • Acute wounds are wounds that proceed orderly through the three recognised stages of the healing process (i.e. the inflammatory stage, the proliferative stage and the remodelling phase) without a protracted timecourse.
  • Chronic wounds are those wounds that do not complete the ordered sequence of biochemical events of the healing process because the wound has stalled in one of the healing stages.
  • Commonly, chronic wounds are stalled in the inflammatory phase.
  • a chronic wound is a wound that has not healed within at least 40 days, particularly at least 50 days, more particularly at least 60 days, most particularly at least 70 days.
  • wounds are an ideal environment for infection, particularly chronic infection, due to their lack of an epithelial barrier and the availability of substrate and surface for microbial attachment and colonisation.
  • infection of a wound often delays healing further and thus renders that wound more susceptible to established infection.
  • the alginate oligomers of the invention are therefore effective in the treatment and prevention of infection of wounds and the treatment of wounds, especially chronic wounds, represents one preferred aspect of the present invention.
  • a method for the treatment or prevention of the infection of a surface or a location underlying a surface comprising administering a pharmaceutically effective amount of an alginate oligomer as defined herein to the subject.
  • the alginate oligomers may be used to treat or prevent infection in wounds, e.g. burns, for example in the treatment of infected wounds, e.g. burns.
  • the alginate oligomers defined herein can remove one of the obstacles to wound healing and therefore the alginate oligomers defined above are also effective in the promotion of healing of acute and chronic wounds.
  • promotion of healing it is meant that the treatment accelerates the healing process of the wound in question (i.e. the progression of the wound through the three recognised stages of the healing process).
  • the acceleration of the healing process may manifest as an increase in the rate of progression through one, two or all of the healing stages (i.e. the inflammatory stage, the proliferative stage and/or the remodelling phase).
  • the acceleration might manifest as the restarting of the linear, sequential healing process after the stall.
  • the treatment shifts the wound from a non-healing state to a state where the wound begins to progress through the healing stages. That progression after the restart may be at a normal rate or even a slower rate compared with the rate a normal acute wound would heal.
  • the infection may be an infection of a medical device, particularly an in-dwelling medical device.
  • the alginate oligomers may be used according to the present invention as oral healthcare agents, for example in the control of dental plaque, e.g. to reduce it or to prevent, reduce or delay its development, by inhibiting or disrupting the adherence of microorganisms to the surface of the teeth or dental/oral prostheses.
  • the alginate oligomers may also be used in the treatment and prevention of infections or infectious disease which may occur in the oral cavity, for example gingivitis and periodontitis.
  • the alginate oligomers can be applied by any oral health/oral hygiene delivery system. This may be through the use of toothpastes, dental gels, dental foams and mouthwashes. Removable dentures and other removable dental prostheses may be treated outside of the oral cavity with the same compositions or other suitable pharmaceutically acceptable compositions.
  • the alginate oligomers can also be incorporated into compositions that are applied to the oral cavity (or applied to removable dentures and other removable dental prostheses outside of the oral cavity) to form a coating that persists on surfaces over time, or that releases the alginate oligomers from the coated surfaces over time, and which inhibit or disrupt the adherence of bacteria to surfaces in the oral cavity and to the surfaces of removable dentures and other removable dental prostheses.
  • the medical uses of the invention are not directed to the treatment of (i) infections in the respiratory tract of patients suffering from COPD's (chronic obstructive pulmonary diseases), in particular the sinuses and the lungs, in particular in the treatment of cystic fibrosis, chronic obstructive pulmonary disease, emphysema, bronchitis and sinusitis; (ii) in the middle ear of patients suffering from glue ear; or (iii) in the reproductive tract of female patients with impaired fertility; or (iv) in the digestive tract of patients with digestive tract malfunction (e.g. constipation).
  • COPD's chronic obstructive pulmonary diseases
  • cystic fibrosis chronic obstructive pulmonary disease
  • emphysema chronic obstructive pulmonary disease
  • bronchitis bronchitis
  • sinusitis in the middle ear of patients suffering from glue ear
  • iii in the reproductive tract of female patients with impaired fertility
  • the alginate oligomers may be used in the treatment of native valve endocarditis, acute otitis media, chronic bacterial prostatitis, pneumonia, (in particular ventilator associated pneumonia), dental plaque, periodontitis, respiratory diseases associated with infection (which may include COPD, COAD, COAP, pneumonia cystic fibrosis and asthma), and device related infection associated with implantable or prosthetic medical devices (e.g. prosthetic valve endocarditis or the infection of lines or catheters or artificial joints or tissue replacements, or endotracheal or tracheotomy tubes).
  • native valve endocarditis e.g. prosthetic valve endocarditis or the infection of lines or catheters or artificial joints or tissue replacements, or endotracheal or tracheotomy tubes.
  • the alginate oligomers of the invention are used to control infections in the eye, e.g. to reduce them, or prevent, reduce or delay their development.
  • the alginate oligomers of the invention are used to treat or prevent bacterial conjunctivitis and the resultant keratoconjunctivitis sicca (also known as dry .eye) that can result through the blockage of the lachrymal gland.
  • the above infections and associated conditions are not, or do not involve, biofilm, in other words they are non-biofilm infections.
  • a "pharmaceutically effective" amount of the alginate oligomer is the amount of alginate oligomer that provides a measurable inhibition or disruption of adherence of the targeted microorganism to the targeted surface (as defined above) and/or a measurable effect on the condition being targeted. This amount can be determined with reference to standard practices for deciding dosage amounts and the skilled man will be able to detect evidence of successful treatment from his experience and with the aid of routine tests available to him.
  • Suitable doses of alginate will vary from subject to subject and can be determined by the physician or veterinary practitioner in accordance with the weight, age and sex of the subject, the severity of the condition, the mode of administration and also the particular alginate oligomer selected.
  • the alginate oligomers of the invention will be applied to the location undergoing treatment at a local concentration of at least 0.5%, preferably at least 2% or at least 4%, more preferably at least 6% or at least 10% weight by volume.
  • Treatment when used in relation to the treatment of a medical condition/infection in a subject in accordance with the invention is used broadly herein to include any therapeutic effect, i.e. any beneficial effect on the condition or in relation to the infection.
  • any therapeutic effect i.e. any beneficial effect on the condition or in relation to the infection.
  • eradication or elimination of the infection, or cure of the subject or infection but also an improvement in the infection or condition of the subject.
  • an improvement in any symptom or sign of the infection or condition, or in any clinically accepted indicator of the infection/condition for example a decrease in wound size or an acceleration of healing time.
  • Treatment thus includes both curative and palliative therapy, e.g. of a pre-existing or diagnosed infection/condition, i.e. a reactionary treatment.
  • Prevention refers to any prophylactic or preventative effect. It thus includes delaying, limiting, reducing or preventing the condition (which reference includes infection and contamination, as applicable, in the different aspects of the invention) or the onset of the condition, or one or more symptoms or indications thereof, for example relative to the condition or symptom or indication prior to the prophylactic treatment. Prophylaxis thus explicitly includes both absolute prevention of occurrence or development of the condition, or symptom or indication thereof, and any delay in the onset or development of the condition or symptom or indication, or reduction or limitation on the development or progression of the condition or symptom or indication. Specifically, the alginate oligomers of the invention can be taken as a prophylactic treatment, for example to prevent, or at least minimise the risk, of infection or contamination (e.g. by a pathogen).
  • the aspect of the invention concerning the combating (treatment or prevention) of infection is of particular utility in the care of hospitalised patients as the risk of contracting a nosocomial infection (commonly known as hospital related/acquired infection or healthcare-associated infection), e.g.
  • Staphylococcus aureus Methicillin Resistant Staphylococcus aureus (MRSA), Pseudomonas aeruginosa, Acinetobacter baumannii, Stenotrophomonas maltophilia, Clostridium difficile, Mycobacterium tuberculosis and Vancomycin-Resistant Enterococcus, and Acinetobacter Iwoffii, Burkholderia cepacia, Burkholderia pseudomalleii, Burkholderia malleii, Burkholderia multivorans, Providencia stuartii can be minimised with a prophylactic regime of the alginate oligomers defined herein.
  • This aspect of the invention is also of particular utility in the care of subjects suffering from trauma, subjects with a burn and subjects with wounds, all of which, as discussed above, are more susceptible to pathogen infection than a subject that is not affected similarly.
  • subjects in need of treatment or prophylaxis according to the invention will be diagnosed as suffering or at risk from the target condition, e.g. identified as having or at risk of developing an infection, in particular a non-biofilm infection.
  • the alginate oligomers of the invention can be taken as a prophylactic treatment to prevent, or at least minimise the risk, of developing an infection, including for example the infection of wounds, native valve endocarditis, acute otitis media, chronic bacterial prostatitis, periodontitis, infections of the respiratory tract and lungs (e.g. cystic fibrosis, COPD, COAD, COAP, pneumonia, or other respiratory diseases, dental plaque, pneumonia, or infection of a medical (e.g. in-dwelling) medical device in particular when these infections do not involve a biofilm.
  • an infection including for example the infection of wounds, native valve endocarditis, acute otitis media, chronic bacterial prostatitis, periodontitis, infections of the respiratory tract and lungs (e.g. cystic fibrosis, COPD, COAD, COAP, pneumonia, or other respiratory diseases, dental plaque, pneumonia, or infection of a medical (e.g. in-dwelling) medical device in particular when these infections do not
  • the alginate oligomers may be used in the methods of the invention in conjunction or combination with a second or further anti-microbial agent (hereinafter "further anti-microbial agent").
  • a second or further anti-microbial agent hereinafter "further anti-microbial agent”.
  • an anti-microbial agent may be any clinically-useful anti-microbial agent and particularly an antibiotic or an antiviral or anti-fungal agent.
  • the anti-microbial agent may again be any anti-microbial agent used for such purposes, e.g. any disinfectant or antiseptic or cleaning or sterilising agent.
  • the agents may be used separately, or together in the same composition, simultaneously or sequentially or separately, e.g. at any desired time interval.
  • the further anti-microbial agent may be used after the alginate oligomer, but a preceding or simultaneous use may be beneficial in some circumstances.
  • anti-microbial agent e.g. antibiotics, antifungals, antivirals, antiseptics may be used and/or sterilising conditions such as irradiation (e.g. UV, X-ray, gamma) extremes of temperature, and extremes of pH.
  • irradiation e.g. UV, X-ray, gamma
  • antibiotics include, but are not limited to the aminoglycosides (e.g. amikacin, gentamicin, kanamycin, neomycin, netilmicin, streptomycin, tobramycin); the carbecephems (e.g. loracarbef); the 1st generation cephalosporins (eg cefadroxil, cefazolin, cephalexin); 2nd generation cephalosporins (e.g. cefaclor, cefamandole, cephalexin, cefoxitin, cefprozil, cefuroxime); 3rd generation cephalosporins (e.g.
  • mafenide sulfacetamide, sulfamethizole, sulfasalazine, sulfisoxazole, trimethoprim- sulfamethoxazole); the tetracyclines (e.g. demeclocycline, doxycycline, minocycline, oxytetracycline, tetracycline); the carbapenems (e.g.
  • the antibiotics vancomycin, tobramycin, meropenem, ciprofloxacin, piperacillin, colistin, aztreonam, ciprofloxacin and azithromycin are preferred.
  • the antibiotic may be selected from amikacin, gentamicin, kanamycin, neomycin, netilmicin, streptomycin, tobramycin, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, telithromycin, CarbomycinA, josamycin, kitasamycin, midecamicine, oleandomycin, spiramycin, tylosin, troleandomycin, aztreonam, imipenem, meropenem, ertapenem, doripenem, panipenem/betamipron, biapenem, PZ-601 , cefixime, cefdinir, cefditoren, cefoperazone, cefotaxime, cefpodoxime, ceftazidime, ceftibuten, ceftizoxime, ceftriaxone, cefepime, demeclocycline, doxycycline, mino
  • antibiotic may selected from ceftazidime, imipenem/cilastatin, meropenem, aztreonam, oxytetracycline, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin, and it is particularly preferred that the antibiotic is selected from ceftazidime, imipenem/cilastatin, meropenem, aztreonam, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin. More preferably the antibiotic is selected from aztreonam, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin.
  • antiseptics include, but are not limited to chlorine bleach (sodium hypochlorite), quaternary ammonium compounds (e.g. benzalkonium chloride, cetyl trimethylammonium bromide, cetylpyridinium chloride), hydrogen peroxide, phenol compounds (e.g. TCP, Triclosan), alcohols (e.g. ethanol), VirkonTM, iodine compunds (e.g. povidone-iodine), silver compounds (e.g. elemental silver nano/microparticles).
  • chlorine bleach sodium hypochlorite
  • quaternary ammonium compounds e.g. benzalkonium chloride, cetyl trimethylammonium bromide, cetylpyridinium chloride
  • hydrogen peroxide phenol compounds (e.g. TCP, Triclosan), alcohols (e.g. ethanol), VirkonTM, iodine compunds (e.g. povidone-iodine),
  • Antimicrobial surfactants are another class of antiseptics. These are compounds that disrupt microbial cell membranes and other structural components and therefore inhibit growth and/or viability of microorganisms. Antimicrobial surfactants and their use in antimicrobial compositions is well known in the art should further guidance be needed the discussion of antimicrobial surfactants in "Preservative-tfree and self-preserving cosmetics and drugs - Principles and practice", Ed. Kabara and Orth, Marcel Dekker, NY, NY, 1997, is explicitly incorporated by reference in its entirety. Antimicrobial surfactants may be anionic, cationic, non-ionic or amphoteric.
  • antimicrobial anionic surfactants include, but are not limited to, sodium dodecyl sulfate (sodium lauryl sulfate), sodium dodecyl aminopropionic acid, sodium ricinoleate, bile acids, alkylaryl sulfonates, Grillosan DS7911 , disodium undecylenic acid monoethanol amidosulfosuccinate.
  • antimicrobial cationic surfactants include, but are not limited to, the quaternary ammionium compounds, the aminimides and chlorhexidine compounds.
  • antimicrobial non-ionic surfactants include, but are not limited to, the monoesters of fatty acids, polyethyleneglycomonoesters of alkyldihydroxybenzoic acids, glucosamine derivatives and diethanolamides of N- lauroyl dipeptides.
  • antimicrobial amphoteric surfactants include, but are not limited to, the alkyl betaines, the alkylamidopropylbetaines, the alkyl aminopropionates, the alkyliminodipropionates and the alkylimidazolines.
  • Representative antifungals include, but are not limited to the polyenes (e.g. natamycin, rimocidin, filipin, nystatin, amphotericin B, candicin; the imidazoles (e.g. miconazole, ketoconazole, clotrimazole, econazole, bifonazole, butoconazole, fenticonazole, isoconazole, oxiconazole, sertaconazole, sulconazole, tioconazole); the triazoles (e.g.
  • allylamines e.g. terbinafine, amorolfine, naftifine, butenafine
  • echinocandins e.g. anidulafungin, caspofungin, micafungin.
  • antivirals include, but are not limited to abacavir, acyclovir, adefovir, amantadine, amprenavir, arbidol, atazanavir, atripla, boceprevir, cidofovir, combivir, darunavir, delavirdine, didanosine, docosanol, edoxudine, efavirenz, emtricitabine, enfuvirtide, entecavir, famciclovir, fomivirsen, fosamprenavir, foscamet, fosfonet, ganciclovir, ibacitabine , imunovir, idoxuridine, imiquimod, indinavir, inosine, interferon type III, interferon type, Il interferon type I, lamivudine, lopinavir, loviride, maraviroc, moroxydine, nelfinavir, nevirap
  • the anti-microbial agent may conveniently be applied before, simultaneously with or following the alginate oligomer. Conveniently the antimicrobial agent is applied at substantially the same time as the alginate or afterwards. For example, the anti-microbial agent is applied at least 1 hour, preferably at least 3 hours, more preferably at least 5 and most preferably at least 6 hours after the alginate oligomer is administered. In other embodiments the further antimicrobial may conveniently be applied or administered before the alginate oligomer, e.g. at least 1 hour, at least 3 hours, at least 6 hours before the alginate oligomer. In these embodiments the alginate oligomer can be applied or administered with or without a further application of the further antimicrobial.
  • the antimicrobial agent can be given (e.g. administered or delivered) repeatedly at time points appropriate for the agent used.
  • the skilled person is able to devise a suitable dosage or usage regimen.
  • the alginate oligomer can also be used repeatedly. This can be as frequently as the anti-microbial agent, but will typically be less frequently. The frequency required will depend on the location of the microorganism, colony composition and the anti-microbial used and the skilled person is able to optimise the dosage or usage patterns to optimise results.
  • the alginate oligomer may be used or applied after physical removal or reduction (e.g. debridement) of the microorganism population causing the infection at the surface undergoing treatment.
  • the population will not be in a biofilm.
  • the location may be contacted with the alginate oligomers for between 0 and 24 hours, particularly 2 and 12 hours, more particularly 4 and 8 hours, most particularly 5 and 7 hours, e.g. 6 hours.
  • an anti-microbial agent may if desired be applied.
  • Such a scenario may be desirable or particularly applicable in a clinical setting.
  • the duration of incubation can be conveniently be designed to correspond to scheduled changes of the wound dressing.
  • Physical removal of the population can be carried out with any suitable surgical, mechanical or chemical means. Conveniently this can be the use of a liquid, gel, gel-sol, semi-solid compositions or gas applied at pressure to the population, sonication, laser, or by abrasive implement.
  • a composition used in the removal itself or as a wash solution before, during or afterwards may conveniently contain the alginate oligomer.
  • a debridement or wash composition e.g. solution for wounds containing an alginate oligomer, particularly any alginate oligomer as herein defined for use, where appropriate, in the treatments and methods of the invention.
  • a debridement composition will typically be a sterile solution, particularly an aqueous sterile solution or an oil-based sterile solution, and may additionally contain proteolysis enzymes (e.g. collagenase, trypsin, pepsin, elastase), an abrasive solid phase (e.g. colloidal silica, ground pumice, ground plant or animal shell).
  • immunostimulatory agents may conveniently be used at timepoints corresponding to those described above in relation to anti-microbial agents and may optionally be used in combination with an alginate oligomer and an anti-microbial agent Suitable immunostimulatory agents include, but are not limited to cytokines e.g.
  • TNF, IL-1, IL-6, IL-8 and immunostimulatory alginates such as high M-content alginates as described for example in US 5,169,840, WO91/11205 and WO03/045402 which are explicitly incorporated by reference herein in their entirety, but including any alginate with immunostimulatory properties.
  • alginate oligomers in combination or conjunction with growth factors, e.g. PDGF, FGF, EGF, TGF, hGF and enzymes may also be beneficial in the medical uses of the invention.
  • suitable enzymes include but are not limited to proteases, e.g. serine proteases, metalloproteases and cysteine proteases (examples of these types of proteases are listed in EP0590746, the entire contents of which are incorporated herein by reference); nucleases, e.g. DNase I and II, RNase A, H, I, II, III, P, PhyM, R; lipases and enzymes capable of degrading polysaccharides.
  • alginate oligomers in combination or conjunction with a physiologically tolerable mucosal viscosity reducing agent could also be beneficial, e.g. a nucleic acid cleaving enzyme (e.g. a DNase such as DNase I), gelsolin, a thiol reducing agent, an acetylcysteine, sodium chloride, an uncharged low molecular weight polysaccharide (e.g. dextran), arginine (or other nitric oxide precursors or synthesis stimulators), or an anionic polyamino acid (e.g. poly ASP or poly GLU).
  • a nucleic acid cleaving enzyme e.g. a DNase such as DNase I
  • gelsolin e.g. a thiol reducing agent
  • an acetylcysteine sodium chloride
  • an uncharged low molecular weight polysaccharide e.g. dextran
  • arginine or other
  • Ambroxol, romhexine, carbocisteine, domiodol, eprazinone.erdosteine, letosteine, mesna, neltenexine, sobrerol, stepronin, tiopronin are specific mucolytics of note.
  • alginate oligomers in combination or conjunction with alpha blockers may also be beneficial in the medical uses of the invention, in the treatment of chronic bacterial prostatitis especially.
  • suitable alpha blockers include but are not limited to the selective alpha-1 blockers (e.g. doxazosin, dilodosin, prazosin, tams ⁇ losin, alf ⁇ zosin, terazosin), and the nonselective adrenergic blockers (e.g. phenoxybenzamine, phentolamine).
  • bronchodilators include but are not limited to the ⁇ 2 agonists (e.g. pirbuterol, epinephrine, salbutamol, salmeterol, levosalbutamol, clenbuterol), the anticholinergics (e.g. ipratropium, oxitropium, tiotropium) and theophylline.
  • ⁇ 2 agonists e.g. pirbuterol, epinephrine, salbutamol, salmeterol, levosalbutamol, clenbuterol
  • anticholinergics e.g. ipratropium, oxitropium, tiotropium
  • corticosteroids include but are not limited to prednisone, flunisolide, triamcinolone, fluticasone, budesonide, mometasone, beclomethasone, amcinonide, budesonide, desonide, fluocinonide, fluocinolone, halcinonide.
  • the alginate oligomers may be used optionally with any other therapeutically active agent it may be desired to use, e.g. an anti-microbial agent, an anti-inflammatory agent, an immunostimulatory agent, a mucosal viscosity reducing agent, a growth inhibitor or an enzyme or an alpha blocker, a bronchodilator or a corticosteroid.
  • an anti-microbial agent e.g. an anti-microbial agent
  • an anti-inflammatory agent e.g. an anti-inflammatory agent
  • an immunostimulatory agent e.g. an immunostimulatory agent
  • a mucosal viscosity reducing agent e.g. an enzyme or an alpha blocker
  • a bronchodilator or a corticosteroid e.g., bronchodilator or a corticosteroid.
  • an anti-microbial or anti-inflammatory agent may improve the clinical effects of the active agent and this may advantageously allow the dose (e.g. the usual or normal dose) of the further therapeutically active agent to be reduced e.g. It may be used at its normal or usual dose or at a lower dose, for example at up to 50% (or at 50%) of its normal dose.
  • the dose e.g. the usual or normal dose
  • the further therapeutically active agent may be reduced e.g. It may be used at its normal or usual dose or at a lower dose, for example at up to 50% (or at 50%) of its normal dose.
  • the invention encompasses the use of a single alginate oligomer or a mixture (multiplicity/plurality) of different alginate oligomers.
  • a combination of different alginate oligomers e.g. two or more
  • the alginates of the invention may be administered to the subject in any convenient form or by any convenient means, e.g. by topical, oral, parenteral, enteral, parenteral routes or by inhalation.
  • the alginate will be administered by topical, oral or parenteral routes or by inhalation.
  • the present invention therefore also provides a pharmaceutical composition for use in the above mentioned treatments and methods comprising an alginate oligomer as defined herein together with at least one pharmaceutically acceptable carrier, diluent or excipient.
  • the active ingredient may be incorporated, optionally together with other active agents, with one or more conventional carriers, diluents and/or excipients, to produce conventional galenic preparations such as tablets, pills, powders (e.g. inhalable powders), lozenges, sachets, cachets, elixirs, suspensions, emulsions, solutions, syrups, aerosols (as a solid or in a liquid medium), sprays (e.g. nasal sprays), compositions for use in nebulisers, ointments, soft and hard gelatine capsules, suppositories, sterile injectable solutions, sterile packaged powders, and the like.
  • Sterile inhalable compositions are of particular note for use in the treatment of respiratory diseases associated with microorganisms (which may include COPD, COAD, COAP, pneumonia, cystic fibrosis, emphysema and asthma).
  • Suitable carriers, excipients, and diluents are lactose, dextrose, sucrose, sorbitol, mannitol, starches, gum acacia, calcium phosphate, inert alginates, tragacanth, gelatine, calcium silicate, microcrystalline cellulose, polyvinylpyrrolidone, cellulose, water syrup, water, water/ethanol, water/ glycol, water/polyethylene, hypertonic salt water, glycol, propylene glycol, methyl cellulose, methylhydroxybenzoates, propyl hydroxybenzoates, talc, magnesium stearate, mineral oil or fatty substances such as hard fat or suitable mixtures thereof.
  • compositions may additionally include lubricating agents, wetting agents, emulsifying agents, suspending agents, preserving agents, sweetening agents, flavouring agents, and the like.
  • the alginate oligomers proposed for use according to the invention may be used in combination with other therapeutic agents, for example to be administered together, in a single pharmaceutical formulation or composition, or separately (i.e. for separate, sequential or simultaneous administration).
  • the alginate oligomers of the invention may be combined with a second (or further) therapeutically active agent, e.g. in a pharmaceutical kit or as a combined (“combination") product.
  • a further aspect of the present invention provides a product containing an alginate oligomer as defined herein and a second active agent as a combined preparation for separate, simultaneous or sequential application to a microorganism and/or administration to a subject or location or surface for use in inhibiting the adherence of a microorganism to a surface; combating a population of microorganisms on a surface or location underlying a surface; combating contamination of a surface or a location underlying a surface with a microorganism; and/or combating the infection of a surface or a location underlying a surface in a subject or any of the conditions defined herein.
  • Additional therapeutically active agents may be included in the pharmaceutical compositions, as discussed in relation to combination therapies above.
  • the invention provides products (e.g. a pharmaceutical kit or a combined (“combination") product) or compositions (e.g. a pharmaceutical composition) including those described herein wherein the product or composition comprises an alginate oligomer as herein defined and a further active agent e.g. a therapeutically active agent, such as an anti-microbial agent e.g. an antibiotic, an immunostimulatory agent, a growth factor, a mucosal viscosity-reducing agent, an agent effective in the treatment of respiratory diseases e.g. a bronchodilator, or an anti-inflammatory agent e.g. an anti-inflammatory steroid.
  • the antibiotic may be a macrolide antibiotic, e.g.
  • the macrolide antibiotic is an azalide macrolide, preferably azithromycin.
  • the invention also provides products (e.g. a pharmaceutical kit or a combined (“combination") product) or compositions (e.g.
  • a pharmaceutical composition including those described herein wherein the product or composition comprises an alginate oligomer as herein defined and an antibiotic selected from amikacin, gentamicin, kanamycin, neomycin, netilmicin, streptomycin, tobramycin, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, telithromycin, CarbomycinA, josamycin, kitasamycin, midecamicine, oleandomycin, spiramycin, tylosin, troleandomycin, aztreonam, imipenem, meropenem, ertapenem, doripenem, panipenem/betamipron, biapenem, PZ-601 , cefixime, cefdinir, cefditoren, cefoperazone, cefotaxime, cefpodoxime, ceftazidime, ceftibuten, ceftizoxime, cef
  • antibiotic may selected from ceftazidime, imipenem/cilastatin, meropenem, aztreonam, oxytetracycline, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin, and it is particularly preferred that the antibiotic is selected from ceftazidime, imipenem/cilastatin, meropenem, aztreonam, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin. • More preferably the antibiotic is selected from aztreonam, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin.
  • the products and compositions are specifically contemplated as for use in the methods of the invention.
  • the products and compositions can be pharmaceutical or non-pharmaceutical. Therefore the products and compositions of this aspect of the invention can be used in any of the methods of the invention.
  • the use of alginate oligomers as herein defined to manufacture such pharmaceutical products and pharmaceutical compositions for use in the medical methods of the invention is also contemplated.
  • the relative content of the alginate oligomer and the further active agent for example antibiotic, e.g. macrolide antibiotic can vary depending on the dosage required and the dosage regime being followed and this will depend on the subject to be treated and the location and identity/constituents of the bacterium, contamination or population.
  • the composition or product will comprise sufficient alginate oligomer that upon administration to a subject or application to a location, the local concentration of the oligomer will be at least 2%, preferably at least 4%, 6% or 8% and most preferably at least 10% (weight by volume).
  • the antibiotic e.g.
  • macrolide antibiotic preferably will be present in an amount that is sufficient to provide a local concentration of at least 0.03125, 0.0625, 0.125, 0.25, 0.5, 1 , 2, 4, 8, 16, 64, 128, 256, or 512, 1024, 2048 or 4096 ⁇ g/ml.
  • the skilled man would know that the amounts of alginate oligomer and/or active agent e.g. antibiotic, e.g. macrolide antibiotic can be reduced if a multiple dosing regime is followed or increased to minimise the number of administrations or applications.
  • the alginate oligomers of the invention may allow the dose of the antibiotic to be reduced.
  • compositions and products of this aspect will typically comprise between 1% and 99%, 5% and 95%, 10% and 90% or 25% and 75% alginate oligomer and 1% and 99%, 5% and 95%, 10% and 90% or 25% and 75% antibiotic, e.g. macrolide antibiotic, allowance being made for other ingredients.
  • antibiotic e.g. macrolide antibiotic
  • Parenterally administrable forms e.g., intravenous solutions
  • solutions should be sterile and free from physiologically unacceptable agents, and should have low osmolarity to minimize irritation or other adverse effects upon administration and thus solutions should preferably be isotonic or slightly hypertonic, e.g. hypertonic salt water (saline).
  • Suitable vehicles include aqueous vehicles customarily used for administering parenteral solutions such as Sodium Chloride Injection, Ringer's Injection, Dextrose Injection, Dextrose and Sodium Chloride Injection, Lactated Ringer's Injection and other solutions such as are described in Remington's Pharmaceutical Sciences, 15th ed., Easton: Mack Publishing Co., pp.
  • the solutions can contain preservatives, antimicrobial agents, buffers and antioxidants conventionally used for parenteral solutions, excipients and other additives which are compatible with the biopolymers and which will not interfere with the manufacture, storage or use of products.
  • the alginate oligomer can be incorporated into creams, ointments, gels, transdermal patches and the like.
  • the alginate oligomers can also be incorporated into medical dressings, for example wound dressings e.g. woven (e.g. fabric) dressings or non-woven dressings (e.g. gels or dressings with a gel component).
  • wound dressings e.g. woven (e.g. fabric) dressings or non-woven dressings (e.g. gels or dressings with a gel component).
  • non-woven dressings e.g. gels or dressings with a gel component.
  • the use of alginate polymers in dressings is known, and such dressings, or indeed any dressings, may further incorporate the alginate oligomers of the invention.
  • the invention further provides a wound dressing comprising an alginate oligomer (which may be any alginate oligomer as herein defined) for use, where appropriate, in the treatments and methods of the invention.
  • an alginate oligomer which may be any alginate oligomer as herein defined
  • in situ drug delivery systems for example gels where solid, semi-solid, amorphous or liquid crystalline gel matrices are formed in situ and which may comprise the alginate oligomer.
  • Such matrices can conveniently be designed to control the release of the alginate oligomer from the matrix, e.g. release can be delayed and/or sustained over a chosen period of time.
  • Such systems may form gels only upon contact with biological tissues or fluids.
  • the gels are bioadhesive. Delivery to any body site that can retain or be adapted to retain the pre-gel composition can be targeted by such a delivery technique.
  • Such systems are described in WO 2005/023176.
  • an oral health care, or oral hygiene, composition comprising an alginate (which may be any alginate oligomer as defined herein), particularly a mouthwash, toothpaste, dental gel or dental foam for use, where appropriate, in the treatments and methods of the invention.
  • alginate which may be any alginate oligomer as defined herein
  • lnhalable compositions are also of note.
  • the formulation of compositions suitable for inhalation is routine for the skilled man and has long been standard practice in the treatment of respiratory diseases, lnhalable compositions may, for instance, take the form of inhalable powders, solutions or suspensions.
  • a preferred composition of the invention is a debridement composition that is used in a debridement process to remove an infection colony or population, for example from a tissue.
  • a composition will be liquid, but gels, gel-sols, or semi-solid compositions might be used.
  • the composition might be used to debride the microorganism population (e.g. by application to the tissue under pressure) and/or may be used to bathe the tissue before, during and/or after debridement by other means such as by surgical, mechanical or chemical processes.
  • the skilled person is readily able to formulate debridement compositions in accordance with the invention.
  • the alginate oligomers as defined herein may be beneficial to administer to animals, e.g. to promote weight gain/growth.
  • Administration can be achieved in the form of the pharmaceutical compositions described herein, but conveniently the alginate oligomers as defined herein may be used as a conventional feed additive, i.e. a compound that is added to animal feed in small, nutritionally inconsequential amounts.
  • feed additives in animal feeds is well established and it would be entirely routine for a skilled man to determine and use appropriate amounts of the alginates of the invention to achieve the desired effects, e.g. weight gain/growth.
  • the alginate oligomer may be applied to the surface to be treated in any convenient composition or formulation, or by any convenient means.
  • the alginate oligomer may be in liquid, gel, gel-sol, semisolid or solid form (e.g. solutions, suspensions, homogenates, emulsions, pastes, powders, aerosols, vapours).
  • the compositions for treating such inanimate surfaces or materials will be a non-pharmaceutically acceptable composition. The choice of composition form will be dictated by the identity of the microorganism, the material of the surface and the surrounding environment or locality of the surface.
  • the surface is part of a fluid line it might be convenient to apply a fluid composition. It might also be preferred to use a composition that persists on the surface or in the part of the fluid line to be treated but that will not leach into the fluid of normal use, e.g. an adhesive gel.
  • a composition that persists on the surface or in the part of the fluid line to be treated but that will not leach into the fluid of normal use e.g. an adhesive gel.
  • the alginate oligomer may be added to a paint formulation and applied to the surface to be treated, e.g. a boat hull or other part of a boat's structure that is exposed to water, or to a building or any part thereof, a tank (e.g. a storage or processing tank) or indeed to any part of any industrial machinery.
  • compositions may conveniently also comprise an anti-microbial agent, as described above, e.g. an antibiotic, chlorine bleach, TCP, ethanol, VirkonTM, povidone-iodine, silver compounds, antimicrobial surfactants, etc.
  • an anti-microbial agent e.g. an antibiotic, chlorine bleach, TCP, ethanol, VirkonTM, povidone-iodine, silver compounds, antimicrobial surfactants, etc.
  • harsher antimicrobials can De used subject to considerations of surface damage, environmental contamination, jser safety and contamination of the treated surface and interaction with the other components of the composition.
  • compositions of the invention may be formulated so as to provide quick, sustained or delayed release of the active ingredient after administration to the subject/surface by employing procedures well known in the art.
  • Adhesive compositions are also preferred.
  • Adhesive, sustained and/or delayed release Formulations may be particularly convenient as it is preferred that surfaces are pretreated with the alginate oligomers of the invention prior to exposure, or prior to new or further exposure, to microorganisms in order to prevent contamination.
  • the invention provides products susceptible to microorganism contamination/colonisation whose susceptible surfaces have been pretreated with an alginate oligomer as defined herein.
  • pretreated it is meant that the susceptible surface is exposed to an alginate oligomer prior to an exposure to a microorganism and that the alginate oligomer persists on the surface for a duration sufficient to prevent contamination/colonisation by a microorganism for an appreciable duration of time.
  • the alginate oligomer will persist for substantially the useful life of the surface, e.g. the pretreatment results in a substantially permanent coating of an alginate oligomer.
  • a pre-treated surface/product is one to which the alginate oligomer is applied and on which it remains.
  • Such a product/surface may be a coated product/surface.
  • Non-limiting examples of products and surfaces susceptible to microorganism contamination/colonisation are described above. Particular mention may be made of medical and surgical devices and food or drink processing, storage or dispensing equipment. Pretreatment can be achieved by any convenient means, for example any form of applying the alginate oligomer to the surface, notably coating the surface, e.g. spray drying, polymer coating with a polymer incorporating the alginate oligomer, and painting, varnishing or lacquering with paint, varnish or lacquer formulations containing the alginate oligomer. Such a "coating" composition (e.g. a paint, varnish or lacquer) containing an alginate oligomer represents a further aspect of the present invention.
  • a coating e.g. a paint, varnish or lacquer
  • the alginate oligomer can be incorporated into the material from which the object or its susceptible parts are manufactured.
  • This approach is suited to objects, or constituent parts thereof, manufactured from polymers such as plastics and silicones, e.g. the medical devices and surgical described above.
  • Products comprising an inanimate surface comprising an alginate oligomer coating or coating composition, or incorporating an alginate oligomer are therefore contemplated.
  • Non-limiting examples of such products and surfaces are described above.
  • medical and surgical devices This may include any kind of line, including catheters (e.g. central venous and urinary catheters), prosthetic devices e.g., heart valves, artificial joints, false teeth, dental crowns, dental caps and soft tissue implants (e.g. breast, buttock and lip implants).
  • Any kind of implantable (or "in-dwelling") medical device is included (e.g. stents, intrauterine devices, pacemakers, intubation tubes (e.g.
  • Further products include food processing, storage, dispensing or preparation equipment or surfaces, tanks, conveyors, floors, drains, coolers, freezers, equipment surfaces, walls, valves, belts, pipes, air conditioning conduits, cooling apparatus, food or drink dispensing lines, heat exchangers, boat hulls or any part of a boat's structure that is exposed to water, dental waterlines, oil drilling conduits, contact lenses and storage cases.
  • Figure 1 shows adherence to titanium discs of Staphylococcus aureus NCTC 6571 stained with the LIVE-DEAD stain showing.
  • Figure 2 shows adherence to acrylic discs of Staphylococcus aureus NCTC 6571 stained with the LIVE-DEAD.
  • Figure 3 shows a graph displaying the number of colony forming units of per ml (CFU ml "1 ) of Staphylococcus aureus NCTC 6571 obtained from untreated acrylic discs or acrylic discs pretreated with G-fragments (Oligo CF-5/20 90-95%G) at concentrations of 2%, 6% and 10% or 0.2% chlorhexidine digluconate.
  • Discs were removed from overnight immersion in G-fragments or 0.2% chlorhexidine digluconate (acrylic discs only) and placed into empty wells of a new 24-well plate. Washed Oxford Staphylococcus (500 ⁇ l) were added to the discs. As a control, untreated discs were also seeded with bacteria. Discs were incubated at 37°C for 1 hour at RT with tilting.
  • each disc from one set of discs was removed from each well and washed with 2ml 0.85% NaCI then placed into an empty well of a new 24-well plate.
  • Cells were stained with Live/Dead® BacLightTM stain (Bacterial Viability Kit, Invitrogen Ltd).
  • the live/dead stain consists of two nucleic acid stains: The green fluorescent SYTO9 and the red-fluorescent propidium iodide which are used in combination to discriminate live and dead bacteria in a mixed population.
  • Bacterial cells with a compromised membrane (those that are considered to be dead or dying) stain red, whereas cells with an intact membrane appear green.
  • each disc from one set of discs was removed from each well and washed with 2ml 0.85% NaCI.
  • Discs were placed into separate Bijou tubes and 500 ⁇ l 0.85% NaCI added. Tubes were vortexed for 1 minute and the vortexed solution was used to prepare serial dilutions in 0.85% NaCI.
  • Three 20 ⁇ l aliquots of each dilution were dropped on blood agar plates as stipulated in the protocol. The plates were incubated for 18 - 24 hours at 37 0 C and observed for growth. Sectors where more than 20 colonies were present without any confluence were utilized to make the viable counts (Miles, A.A & Misra, S.S. (1938). J. Hyg. (London), 38, 732). Results are shown in Figure 3 (acrylic discs) and Table 1 (titanium discs).
  • G-fragments substantially reduce the number of Staphylococcus aureus NCTC 6571 that adhere to titanium or acrylic surfaces after incubation for 1hr.
  • Example 4 Topical composition comprising alginate oligomer
  • a topical composition comprising an alginate oligomer is prepared with the following ingredients.
  • Example 5- Debridement composition comprising alginate oligomer
  • liquid debridement composition comprising an alginate oligomer is prepared with the following ingredients.

Abstract

The present invention provides a method for inhibiting the adherence of a microorganism to a surface, said method comprising contacting said microorganism and/or the surface with an alginate oligomer, wherein said alginate oligomer has a number average degree of polymerisation of 8-50 and wherein at least 90% of the monomer residues are guluronate. Both medical and non-medical uses are provided.

Description

Alginate Oligomers for the Inhibition of Microbial Adherence to Surfaces
The present invention relates to the use of alginate oligomers to inhibit the adherence of microorganisms to surfaces. The invention is based on the surprising discovery that certain alginate oligomers are capable of interfering with the mechanisms by which microorganisms, in particular microorganisms such as bacteria, attach to surfaces. Accordingly, the invention also provides a method for inhibiting the adherence of microorganisms to surfaces, including in or at both biotic and abiotic sites or locations. Thus, both medical and non-medical uses and methods are provided to combat infection or to decontaminate or prevent or inhibit contamination (i.e colonisation) of animate and inanimate surfaces, e.g. for disinfection and cleaning purposes.
Many microorganisms, have little or no detrimental impact on human activities. Some are necessary for human well-being and others are even beneficial. However, many microorganisms have activities that are detrimental to human activities, for instance, by causing disease, by damaging crops and animal health, by spoiling food, or by negatively affecting the environment. The ability to control microorganism populations is essential to mitigate the potentially detrimental effects of microorganism activities.
An effective mechanism for controlling the effects of microorganism populations is to control the numbers of individuals in microorganism populations, or to control the activity of the individuals in microorganism populations. This can be achieved by treating target populations with agents that can kill or inactivate the microorganisms or agents which can inhibit the growth or replication of the microorganisms, i.e. antimicrobial agents. Agents with antimicrobial functions include physical conditions such as UV, X-ray and gamma radiation, extremes of temperature, pH, osmotic pressure and atmospheric pressure, and also chemicals, e.g. disinfectants, antiseptics and antimicrobial chemotherapeutic compounds (antibiotics, antifungals, antivirals and antiprotozoans, for instance).
An alternative strategy is to interfere with the mechanisms by which microorganisms attach themselves to surfaces; an essential early step in the establishment, maintenance or expansion of a population of microorganisms on a surface or a location underlying a surface. By inhibiting or disrupting adherence the contamination/colonisation of a location by microorganisms can be prevented, reduced or eliminated and thus controlled.
The benefits of controlling microorganism populations are such that vast expenditures of time and resources are made each year globally to achieve this end. Alternative or improved strategies for control of microorganism populations are always needed, especially in view of the emergence of microorganisms that have developed, or begun to develop, resistance to some of the control strategies currently available. Thus, there is a need for alternative methods to inhibit or disrupt the adherence of microorganisms to surfaces.
As noted above, it has been found that a particular class of alginates, namely alginate oligomers, are effective in interfering with the mechanisms by which microorganisms attach to surfaces. These compounds are therefore capable of addressing the needs described above.
As such, according to the present invention there is proposed a new method or means to inhibit the adherence of microorganisms to surfaces which involves the use of alginate oligomers.
Alginates are linear polymers of (1-4) linked β-D-mannuronic acid (M) and/or its C-5 epimer α-L-guluronic acid (G). The primary structure of alginates can vary greatly. The M and G residues can be organised as homopolymeric blocks of contiguous M or G residues, as blocks of alternating M and G residues and single M or G residues can be found interspacing these block structures. An alginate molecule can comprise some or all of these structures and such structures might not be uniformly distributed throughout the polymer. In the extreme, there exists a homopolymer of guluronic acid (polyguluronate) or a homopolymer of mannuronic acid (polymannuronate).
Alginates have been isolated from marine brown algae (e.g. certain species of Durvillea, Lessonia and Laminaria) and bacteria such as Pseudomonas aeruginosa and Azotobacter vinelandii. Other pseudomonads (e.g. Pseudomonas fluorescens, Pseudomonas putida, and Pseudomonas mendocina) retain the genetic capacity to produce alginates but in the wild they do not produce detectable levels of alginate. By mutation these non-producing pseudomonads can be induced to produce stably large quantities of alginate.
Alginate is synthesised as polymannuronate and G residues are formed by the action of epimerases (specifically C-5 epimerases) on the M residues in the polymer. In the case of alginates extracted from algae, the G residues are predominantly organised as G blocks because the enzymes involved in alginate biosynthesis in algae preferentially introduce the G neighbouring another G, thus converting stretches of M residues into G-blocks. Elucidation of these biosynthetic systems has allowed the production of alginates with specific primary structures (WO 94/09124, Gimmestad, M ef a/, Journal of Bacteriology, 2003, Vo1 185(12) 3515-3523 and WO 2004/011628).
Alginates are typically isolated from natural sources as large high molecular weight polymers (e.g. an average molecular weight in the range 300,000 to 500,000 Daltons). It is known, however, that such large alginate polymers may be degraded, or broken down, e.g. by chemical or enzymatic hydrolysis to produce alginate structures of lower molecular weight. Alginates that are used industrially typically have "an average molecular weight in the range of 100,000 to 300,000 Daltons (such alginates are still considered to be large polymers) although alginates of an average molecular weight of approximately 35,000 Daltons have been used in pharmaceuticals.
It has now been found that alginate oligomers can interfere with the mechanisms by which microorganisms attach to a surface. The exact mechanism for these activities is not known, but the activities are believed to be a consequence of a direct effect on the interactions that occur between microorganisms and surfaces.
In a first aspect therefore the invention provides a method for inhibiting the adherence of a microorganism to a surface, said method comprising contacting the microorganism and/or the surface with an alginate oligomer.
As noted above, alginates typically occur as polymers of an average molecular weight of at least 35,000 Daltons i.e. approximately 175 to 190 monomer residues, although typically much higher and an alginate oligomer according to the present invention may be defined as a material obtained by fractionation (i.e. size reduction) of an alginate polymer, commonly a naturally occurring alginate. An alginate oligomer can be considered to be an alginate of an average molecular weight of less than 35,000 Daltons (i.e. less than approximately 190 or less than 175 monomer residues), in particular an alginate of an average molecular weight of less than 30,000 Daltons (i.e. less than approximately 175 or less than 150 monomer residues) more particularly an average molecular weight of less than 25,000 or 20,000 Daltons (i.e. less than approximately 135 or 125 monomer residues or less than approximately 110 or 100 monomer residues).
Viewed alternatively, an oligomer generally comprises 2 or more units or residues and an alginate oligomer for use according to the invention will typically contain 2 to 100 monomer residues, preferably 2 to 75, preferably 2 to 50, more preferably 2 to 40, 2 to 35 or 2 to 30 residues. Thus, an alginate oligomer for use according to the invention will typically have an average molecular weight of 350 to 20,000 Daltons, preferably 350 to 15,000 Daltons, preferably 350 to 10,000 Daltons and more preferably 350 to 8000 Daltons, 350 to 7000 Daltons, or 350 to 6,000 Daltons.
Alternatively put, the alginate oligomer may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn) of 2 to 100, preferably 2 to 75, preferably 2 to 50, more preferably 2 to 40, 2 to 35 or 2 to 30, 2 to 28, 2 to 25, 2 to 22, 2 to 20, 2 to 18, 2 to 17, 2 to 15 or 2 to 12.
Other representative ranges (whether for the number of residues, DP or DPn) include any one of 3, 4, 5, 6, 7, 8, 9, 10 or 11 to any one of 50, 45, 40, 39, 38,
37, 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13 or 12.
Other representative ranges (whether for the number of residues, DP or DPn) include any one of 8, 9, 10, 11 , 12, 13, 14 or 15 to any one of 50, 45, 40, 39,
38, 37, 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17 or 16.
Other representative ranges (whether for the number of residues, DP or DPn) include any one of 11 , 12, 13, 14, 15, 16, 17 or 18 to any one of 50, 45, 40,
39, 38, 37, 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23, 22, 21 , 20 or 19.
Other representative ranges (whether for the number of residues, DP or DPn) include any one of 14, 15, 16, 17, 18, 19, 20, or 21 to any one of 50, 45, 40, 39, 38, 37, 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23 or 22.
In certain embodiments the alginate oligomer does not have a number of residues, DP br DPn of 9 or 13.
An alginate oligomer will, as noted above, contain (or comprise) guluronate or guluronic acid (G) and/or mannuronate or mannuronic acid (M) residues or units. An alginate oligomer according to the invention will preferably be composed solely, or substantially solely (i.e. consist essentially of) uronate/uronic acid residues, more particularly solely or substantially solely of G and/or M residues. Alternatively expressed, in the alginate oligomer of use in the present invention, at least 80%, more particularly at least 85, 90, 95 or 99% of the monomer residues may be uronate/uronic acid residues, or, more particularly G and/or M residues. In other words, preferably the alginate oligomer will not comprise other residues or units (e.g. other saccharide residues, or more particularly other uronic acid/uronate residues).
The alginate oligomer is preferably a linear oligomer.
More particularly, in a preferred embodiment at least 30% of the monomer residues of the alginate oligomer are G residues (i.e. guluronate or guluronic acid). In other words the alginate oligomer will contain at least 30% guluronate (or guluronic acid) residues. Specific embodiments thus include alginate oligomers with (e.g. containing) 30 to 70% G (guluronate) residues or 70 to 100% G (guluronate) residues. Thus, a representative alginate oligomer for use according to the present invention may contain at least 70% G residues (i.e. at least 70% of the monomer residues of the alginate oligomer will be G residues).
Preferably at least 50% or 60%, more particularly at least 70% or 75%, even more particularly at least 80, 85, 90, 91 , 92, 93, 94, 95, 96, 97, 98 or 99% of the monomer residues are guluronate. In one embodiment the alginate oligomer may be an oligoguluronate (i.e. a homooligomer of G, or 100% G)
In a further preferred embodiment, the above described alginates of the invention have a primary structure wherein the majority of the G residues are in so called G-blocks. Preferably at least 50%, more preferably at least 70 or 75%, and most preferably at least 80, 85, 90, 92 or 95% of the single G residues are in G- blocks. A G block is a contiguous sequence of at least two G residues, preferably at least 3 contiguous G residues, more preferably at least 4 or 5 contiguous G residues, most preferably at least 7 contiguous G residues.
In particular at least 90% of the G residues are linked 1-4 to another G residue. More particularly at least 95%, more preferably at least 98%, and most preferably at least 99% of the G residues of the alginate are linked 1-4 to another G residue.
The alginate oligomer of use in the invention is preferably a 3- to 35-mer, more preferably a 3- to 28-mer, in particular a 4- to 25-mer, especially a 6- to 22- mer, in particular an 8- to 20-mer, especially a 10- to 15-mer, e.g. having a molecular weight in the range 350 to 6400 Daltons or 350 to 6000 Daltons, preferably 550 to 5500 Daltons, preferably 750 to 5000 Daltons, and especially 750 to 4500 Daltons or 2000 to 3000 Daltons.
It may be a single compound or it may be a mixture of compounds, e.g. of a range of degrees of polymerization. As noted above, the monomeric residues in the alginate oligomer, may be the same or different and not all need carry electrically charged groups although it is preferred that the majority (e.g. at least 60%, preferably at least 80% more preferably at least 90%) do. It is preferred that a substantial majority, e.g. at least 80%, more preferably at least 90% of the charged groups have the same polarity. In the alginate oligomer, the ratio of hydroxyl groups to charged groups is preferably at least 2:1 , more especially at least 3:1.
The alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 3-28, 4-25, 6-22, 8- 20 or 10-15, or 5 to 18 or 7 to 15 or 8 to 12, especially 10.
The alginate oligomer of the invention may have a degree of polymerisation (DP), or a nurnber average degree of polymerisation (DPn), of 8-50, 8-40, 8-35, 8- 30, 8-28, 8-25, 8-22, 8-20, 8-18, 8-16 or 8-14.
The alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 9-50, 9-40, 9-35, 9- 30, 9-28, 9-25, 9-22, 9-20, 9-18, 9-16 or 9-14.
The alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 10-50, 10-40, 10-35, 10-30, 10-28, 10-25, 10-22, 10-20, 10-18, 10-16, 10-14, 10-13, 10-12 or 10-11.
The alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 11-50, 11-40, 11-35, 11-30, 11-28, 11-25, 11-22, 11-20, 11-18, 11-16, 11-14, 11-13 or 11-12.
The alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 12-50, 12-40, 12-35, 12-30, 12-28, 12-25, 12-22, 12-20, 12-18, 12-16 or 12-14.
The alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 13-50, 13-40, 13-35, 13-30, 13-28, 13-25, 13-22, 13-20, 13-18 or 13-16.
The alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 14-50, 14-40, 14-35, 14-30, 14-28, 14-25, 14-22, 14-20, 14-18 or 14-16. The alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 15-50, 15-40, 15-35, 15-30, 15-28, 15-25, 15-22, 15-20, 15-18 or 15-16.
The alginate oligomer of the invention may have a degree of polymerisation (DP), or a number average degree of polymerisation (DPn), of 18-50, 18-40, 18-35, 18-30, 18-28, 18-25, 18-22 or 18-20.
Preferably the alginate oligomer of the invention is substantially free, preferably essentially free, of alginate oligomers having a degree of polymerisation outside of the ranges disclosed herein. This may be expressed in terms of the molecular weight distribution of the alginate oligomer of the invention, e.g. the percentage of each mole of the alginate oligomer being used in accordance with the invention which has a DP outside the relevant range.
The molecular weight distribution is preferably such that no more than 10%, preferably no more than 9, 8, 7, 6, 5, 4, 3, 2, or 1% mole has a DP of three, two or one higher than the relevant upper limit for DPn. Likewise it is preferred that no more than 10%, preferably no more than 9, 8, 7, 6, 5, 4, 3, 2, or 1% mole has a DP below a number three, two or one smaller than the relevant lower limit for DPn.
Suitable alginate oligomers are described in WO2007/039754, WO2007/039760, WO 2008/125828, and PCT/GB2008/003607, the disclosures of which are explicitly incorporated by reference herein in their entirety.
Representative suitable alginate oligomers have a DPn in the range 5 to 30, a guluronate/galacturonate fraction (F6) of at least 0.80, a mannuronate fraction (FM) of no more than 0.20, and at least 95 mole% of DP no more than 25.
Further suitable alginate oligomers have a number average degree of polymerization in the range 7 to 15 (preferably 8 to 12), a guluronate/galacturonate fraction (F6) of at least 0.85 (preferably at least 0.90), a mannuronate fraction (FM) of no more than 0.15 (preferably no more than 0.10), and having at least 95% mole with a degree of polymerization less than 17 (preferably less than 14).
Further suitable alginate oligomers have a number average degree of polymerization in the range 5 to 18 (especially 7 to 15), a guluronate/galacturonate fraction (F6) of at least 0.80 (preferably at least 0.85, especially at least 0.92), a mannuronate fraction (FM) of no more than 0.20 (preferably no more than 0.15, especially no more than 0.08), and having at least 95% mole with a degree of polymerization less than 20 (preferably less than 17). Further suitable alginate oligomers have a number average degree of polymerization in the range 5 to 18, a guluronate/galacturonate fraction (FG) of at least 0.92, a mannuronate fraction (FM) of no more than 0.08, and having at least 95% mole with a degree of polymerization less than 20.
Further suitable alginate oligomers have a number average degree of polymerization in the range 5 to 18 (preferably 7 to 15, more preferably 8 to 12, especially about 10), a guluronate/galacturonate fraction (FG) of at least 0.80 (preferably at least 0.85, more preferably at least 0.90, especially at least 0.92, most especially at least 0.95), a mannuronate fraction (FM) of no more than 0.20 (preferably no more than 0.15, more preferably no more than 0.10, especially no more than 0.08, most especially no more than 0.05), and having at least 95% mole with a degree of polymerization less than 20 (preferably less than 17, more preferably less than 14).
Further suitable alginate oligomers have a number average degree of polymerization in the range 7 to 15 (preferably 8 to 12), a guluronate/galacturonate fraction (F6) of at least 0.92 (preferably at least 0.95), a mannuronate fraction (FM) of no more than 0.08 (preferably no more than 0.05), and having at least 95% mole with a degree of polymerization less than 17 (preferably less than 14).
Further suitable alginate oligomers have a number average degree of polymerization in the range 5 to 18, a guluronate/galacturonate fraction (FG) of at least 0.80, a mannuronate fraction (FM) of no more than 0.20, and having at least 95% mole with a degree of polymerization less than 20.
Further suitable alginate oligomers have a number average degree of polymerization in the range 7 to 15, a guluronate/galacturonate fraction (FG) of at least 0.85, a mannuronate fraction (FM) of no more than 0.15, and having at least 95% mole with a degree of polymerization less than 17.
Further suitable alginate oligomers have a number average degree of polymerization in the range 7 to 15, a guluronate/galacturonate fraction (FG) of at least 0.92, a mannuronate fraction (FM) of no more than 0.08, and having at least 95% mole with a degree of polymerization less than 17.
It will thus be seen that a particular class of alginate oligomers favoured according to the present invention is alginate oligomers defined as so-called "high G" or "G-block" oligomers i.e. having a high content of G residues or G-blocks (e.g wherein at least 70% of the monomer residues are G, preferably arranged in G- blocks). However, other types of alginate oligomer may also be used, including in particular "high M" or "M-block" oligomers or MG-block oligomers, as described further below. Accordingly, it is alginate oligomers with high proportions of a single monomer type, and with said monomers of this type being present predominantly in contiguous sequences of that monomer type, that represent oligomers that are particularly preferred, e.g. oligomers wherein at least 70% of the monomer residues in the oligomer are G residues linked 1-4 to another G-residue, or more preferably at least 75%, and most preferably at least 80, 85, 90, 92, 93, 94, 95, 96, 97, 98, 99% of the monomers residues of the oligomer are G residues linked 1-4 to another G residue. This 1-4 linkage of two G residues can be alternatively expressed as a guluronic unit bound to an adjacent guluronic unit.
Thus, In a further embodiment more than 50% of the monomer residues of the alginate oligomer are M residues (i.e. mannuronate or mannuronic acid). In other words the alginate oligomer will contain more than 50% mannuronate (or mannuronic acid) residues. Specific embodiments thus include alginate oligomers with (e.g. containing) 50 to 70% M (mannuronate) residues or e.g. 70 to 100% M (mannuronate) residues. Further specific embodiments also include oligomers containing 71 to 85% M residues or 85 to 100% M residues. Thus, a representative alginate oligomer for use according to this embodiment of the present invention will contain more than 70% M residues (i.e. more than 70% of the monomer residues of the alginate oligomer will be M residues).
In other embodiments at least 50% or 60%, more particularly at least 70% or 75%, even more particularly at least 80, 85, 90, 95 or 99% of the monomer residues are mannuronate. In one embodiment the alginate oligomer may be an oligomannuronate (i.e. a homooligomer of M, or 100% M).
In a further embodiment, the above described alginates of the invention have a primary structure wherein the majority of the M residues are in so called M- blocks. In this embodiment preferably at least 50%, more preferably at least 70 or 75%, and most preferably at least 80, 85, 90 or 95% of the M residues are in M- blocks. An M block is a contiguous sequence of at least two M residues, preferably at least 3 contiguous M residues, more preferably at least 4 or 5 contiguous M residues, most preferably at least 7 contiguous M residues.
In particular, at least 90% of the M residues are linked 1-4 to another M residue. More particularly at least 95%, more preferably at least 98%, and most preferably at least 99% of the M residues of the alginate are linked 1-4 to another M residue. Other preferred oligomers are alginate oligomers wherein at least 70% of the monomer residues in the oligomer are M residues linked 1-4 to another M- residue, or more preferably at least 75%, and most preferably at least 80, 85, 90, 92, 93, 94, 95, 96, 97, 98, 99% of the monomers residues of the oligomer are M residues linked 1-4 to another M residue. This 1-4 linkage of two M residues can be alternatively expressed as a mannuronic unit bound to an adjacent mannuronic unit.
In a still further embodiment, the alginate oligomers of the invention comprise a sequence of alternating M and G residues. A sequence of at least three, preferably at least four, alternating M and G residues represents an MG block. Preferably the alginate oligomers of the invention comprise an MG block. Expressed more specifically, an MG block is a sequence of at least three contiguous residues consisting of G and M residues and wherein each non-terminal (internal) G residue in the contiguous sequence is linked 1-4 and 4-1 to an M residue and each non-terminal (internal) M residue in the contiguous sequence is linked 1-4 and 4-1 to a G residue. Preferably the MG block is at least 5 or 6 contiguous residues, more preferably at least 7 or 8 contiguous residues.
In a further embodiment the minority uronate in the alginate oligomer (i.e. mannuronate or guluronate) is found predominantly in MG blocks. In this embodiment preferably at least 50%, more preferably at least 70 or 75% and most preferably at least 80, 85, 90 or 95% of the minority uronate monomers in the MG block alginate oligomer are present in MG blocks. In another embodiment the alginate oligomer is arranged such that at least 50%, at least 60%, at least 70%, at least 80%, at least 85%, at least 90%, at least 95%, at least 99%, e.g. 100% of the G and M residues in the oligomer are arranged in MG blocks.
Although at its broadest, the invention extends to embodiments wherein at least 1% but less than 100% of the monomer residues of the oligomer are G residues (i.e. guluronate or guluronic acid), more particularly, and as defined further below, at least 30% of the monomer residues are G residues. Thus, at its broadest the MG block containing alginate oligomer may contain at least 1%, but less than 100%, guluronate (or guluronic acid) residues, but generally the MG block containing alginate oligomer will contain at least 30% (or at least 35, 40 or 45% or 50% G) but less than 100% G. Specific embodiments thus include MG block containing alginate oligomers with (e.g. containing) 1 to 30% G (guluronate) residues, 30 to 70% G (guluronate) residues or 70 to 99% G (guluronate) residues. Thus, a representative MG block containing alginate oligomer for use according to the present invention may contain more than 30%, but less than 70%, G residues (i.e. more than 30%, but less than 70%, of the monomer residues of the MG block alginate oligomer will be G residues).
Preferably more than 30%, more particularly more than 35% or 40%, even more particularly more than 45, 50, 55, 60 or 65%, but in each case less than 70%, of the monomer residues of the MG block containing alginate oligomer are guluronate. Alternatively, less than 70%, more preferably less than 65% or 60%, even more preferably less than 55, 50, 45, 40 or 35%, but in each case more than 30% of the monomer residues of the MG block containing alginate oligomer are guluronate. Any range formed by any combination of these values may be chosen. Therefore for instance the MG block containing alginate oligomer can have e.g. between 35% and 65%, 40% and 60% or 45% and 55% G residues.
In another embodiment the MG block containing alginate oligomer may have approximately equal amounts of G and M residues (e.g. ratios between 65% G/35% M and 35% G/65% M, for instance 60% G/40% M and 40% G/60% M; 55% G/45% M and 45% G/55% M; 53% G/47% M and 47% G/53% M; 51% G/49% M and 49% G/51% M; e.g. about 50% G and about 50% M) and these residues are arranged predominantly, preferably entirely or as completely as possible, in an alternating MG pattern (e.g. at least 50% or at least 60, 70, 80, 85, 90 or 95% or 100% of the M and G residues are in an alternating MG sequence).
In certain embodiments the terminal uronic acid residues of the oligomers of the invention do not have a double bond, especially a double bond situated between the C4 and C5 atom. Such oligomers may be described as having saturated terminal uronic acid residues. The skilled man would be able to prepare oligomers with saturated terminal uronic acid residues without undue burden. This may be through the use of production techniques which yield such oligomers, or by converting (saturating) oligomers produced by processes that yield oligomers with unsaturated terminal uronic acid residues.
The alginate oligomer will typically carry a charge and so counter ions for the alginate oligomer may be any physiologically tolerable ion, especially those commonly used for charged drug substances, e.g. sodium, potassium, ammonium, chloride, mesylate, meglumine, etc. Ions which promote alginate gelation e.g. group 2 metal ions may also be used. While the alginate oligomer may be a synthetic material generated from the polymerisation of appropriate numbers of guluronate and mannuronate residues, the alginate oligomers of use in the invention may conveniently be obtained, produced or derived, from natural sources such as those mentioned above, namely natural alginate source materials.
Polysaccharide to oligosaccharide cleavage to produce the alginate oligomer useable according to the present invention may be performed using conventional polysaccharide lysis techniques such as enzymatic digestion and acid hydrolysis. In one favoured embodiment acid hydrolysis is used to prepare the alginate oligomers on the invention. In other embodiments enzymic digestion is used with an additional processing step(s) to saturate the terminal uronic acids in the oligomers.
Oligomers may then be separated from the polysaccharide breakdown products chromatographically using an ion exchange resin or by fractionated precipitation or solubilisation or filtration. US 6,121 ,441 and WO 2008/125828, which are explicitly incorporated by reference herein in their entirety, describe a process suitable for preparing the alginate oligomers of use in the invention. Further information and discussion can be found in for example in "Handbooks of Hydrocolloids?, Ed. Phillips and Williams, CRC, Boca Raton, Florida, USA, 2000, which textbook is explicitly incorporated by reference herein in its entirety.
The alginate oligomers may also be chemically modified,, including but not limited to modification to add charged groups (such as carboxylated or carboxymethylated glycans) and alginate oligomers modified to alter flexibility (e.g. by periodate oxidation).
Alginate oligomers (for example oligoguluronic acids) suitable for use according to the invention may conveniently be produced by acid hydrolysis of alginic acid from, but not limited to, Laminaria hyperbora and Lessonia nigrescens, dissolution at neutral pH, addition of mineral acid reduce the pH to 3.4 to precipitate the alginate oligomer (oligoguluronic acid), washing with weak acid, resuspension at neutral pH and freeze drying.
The alginates for production of alginate oligomers of the invention can also be obtained directly from suitable bacterial sources e.g. Pseudomonas aeruginosa or Azotobacter vinelandii.
In embodiments where alginate oligomers which have primary structures in which the majority of the G residues are arranged in G-blocks rather than as single residues are required, algal sources are expected to be most suitable on account of the fact that the alginates produced in these organisms tend to have these structures. The bacterial sources may more suitable for obtaining alginate oligomers of different structures.
The molecular apparatus involved in alginate biosynthesis in Pseudomonas fluorescens and Azotobacter vinelandii has been cloned and characterised (WO 94/09124; Ertesvag, H., er a/, Metabolic Engineering, 1999, Vo1 1 , 262-269; WO 2004/011628; Gimmestad, M., ef a/ (supra); Remminghorst and Rehm, Biotechnology Letters, 2006, VoI 28, 1701-1712; Gimmestad, M. et al, Journal of Bacteriology, 2006, Vo1 188(15), 5551-5560) and alginates of tailored primary structures can be readily obtained by manipulating these systems.
The G content of alginates (for example an algal source material) can be increased by epimerisation, for example with mannuronan C-5 epimerases from A.vinelandii or other epimerase enzymes. Thus, for example in vitro epimerisation may be carried out with isolated epimerases from Pseudomonas or Azotobacter, e.g. AIgG from Pseudomonas fluorescens or Azotobacter vinelandii or the AIgE enzymes (AIgEI to AlgE7) from Azotobacter vinelandii. The use of epimerases from other organisms that have the capability of producing alginate, particularly algae, is also specifically contemplated. The in vitro epimerisation of low G alginates with Azotobacter vinelandii AIgE epimerases is described in detail in Ertesvag ef a/ (supra) and Strugala et al (Gums and Stabilisers for the Food Industry, 2004, 12, The Royal Society of Chemistry, 84 - 94).
To obtain G-block containing alginates or alginate oligomers, epimerisation with one or more Azotobacter vinelandii AIgE epimerases other than AIgE4 is preferred as these enzymes are capable of producing G block structures. On the other hand AIgE4 epimerase can be used to create alginates or alginate oligomers with alternating stretches of M/G sequence or primary structures containing single G residue as it has been found that this enzyme seems preferentially to epimerise individual M residues so as to produce single G residues linked to M residues rather than producing G blocks. Particular primary structures can be obtained by using different combinations of these enzymes.
Mutated versions of these enzymes or homologues from other organisms are also specifically contemplated as of use. WO 94/09124 describes recombinant or modified mannuronan C-5 epimerase enzymes (AIgE enzymes) for example encoded by epimerase sequences in which the DNA sequences encoding the different domains or modules of the epimerases have been shuffled or deleted and recombined. Alternatively, mutants of naturally occurring epimerase enzymes, (AIgG or AIgE) may be used, obtained for example by site directed or random mutagenesis of the AIgG or AIgE genes.
A different approach is to create Pseudomonas and Azotobacter organisms that are mutated in some or all of their epimerase genes in such a way that those mutants produce alginates of the required structure for subsequent alginate oligomer production, or even alginate oligomers of the required structure and size (or molecular weight). The generation of a number of Pseudomonas fluoresceins organisms with mutated AIgG genes is described in detail in WO 2004/011628 and Gimmestad, M., et al, 2003 (supra). The generation of a number of Azotobacter vinelandii organisms with mutated AIgE genes is disclosed in Gimmestad, M., et al, 2006 {supra). The skilled man would be able to use this teaching to produce new mutants that could be used to give rise to the alginate oligomers of the. invention without undue burden.
A further approach is to delete or inactivate the endogenous epimerase genes from an Azotobacter or a Pseudomonas organism and then to introduce one or more exogenous epimerase genes, which may or may not be mutated (i.e. may be wild-type or modified) and the expression of which may be controlled, for example by the use of inducible or other "controllable promoters". By selecting appropriate combinations of genes, alginates of predetermined primary structure can be produced.
A still further approach would be to introduce some or all of the alginate biosynthesis machinery of Pseudomonas and/or Azotobacter into a non-alginate producing organism (e.g. E. coll) and to induce the production of alginate from these genetically modified organisms.
When these culture-based systems are used, the primary structure of the alginate or alginate oligomer products can be influenced by the culture conditions. It is well within the capabilities of the skilled man to adjust culture parameters such as temperature, osmolarity, nutrient levels/sources and atmospheric parameters in order to manipulate the primary structure of the alginates produced by a particular organism.
References to "G residues/G" and "M residues/M" or to guluronic acid or mannuronic acid, or guluronate or mannuronate are to be read interchangeably as references to guluronic acid/guluronate and mannuronic acid/mannuronate (specifically α-L-guluronic acid/guluronate and β-D-mannuronic acid/mannuronate), and further include derivatives thereof in which one or more available side chains or groups have been modified without resulting in activity, specifically microorganism adherence-inhibiting activity, that is substantially lower than that of the unmodified polymer. Common saccharide modifying groups would include acetyl, sulphate, amino, deoxy, alcohol, aldehyde, ketone, ester and anhydro groups. The alginate oligomers may also be chemically modified to add charged groups (such as carboxylated or carboxymethylated glycans), and to alter flexibility (e.g. by periodate oxidation). The skilled man would be aware of still further chemical modifications that can be made to the monosaccharide subunits of oligosaccharides and these can be applied to the alginates of the invention.
The term "microorganism" as used herein includes any microbial organism, that is any organism that is microscopic, namely too small to be seen by the naked eye. In particular as used herein the term includes the organisms typically thought of as microorganisms, particularly bacteria, fungi, archaea, algae and protists. The term thus particularly includes organisms that are typically unicellular, but which may have the capability of organising into simple cooperative colonies or structures such as filaments, hyphae or mycelia (but not true tissues) under certain conditions. The microorganism may be prokaryotic or eukaryotic, and may be from any class, genus or species of microorganism. Examples of prokaryotic microorganisms include, but are not limited to, bacteria, including the mycoplasmas, (e.g. Gram- positive, Gram-negative bacteria or Gram test non-responsive bacteria) and archaeobacteria. Eukaryotic microorganisms include fungi, algae and others that are, or have been, classified in the taxonomic kingdom Protista or regarded as protists, and include, but are not limited to, for example, protozoa, diatoms, protoophyta, and fungus-like molds. The microorganism may be aerobic or anaerobic. The microorganism may be pathogenic or non-pathogenic, or a be spoilage or an indicator microorganism. In particular preferred embodiments the microorganism is pathogenic.
The term "microorganism" is considered interchangeable with the term "microbe" and any terms such as "microbial" should be interpreted accordingly. The microorganism is not a virus, i.e. is a prokaryote or eukaryote.
Bacteria or fungi represent preferred classes of microorganism and accordingly the alginate oligomers may be preferably viewed as having antibacterial or anti-fungal activity. Examples of genera or species of bacteria include, but are not limited to, Abiotrophia, Achromobacter, Acidaminococcus, Acidovorax, Acinetobacter, Actinobacillus, Actinobaculum, Actinomadura, Actinomyces, Aerococcυs, Aeromonas, Afipia, Agrobacterium, Alcaligenes, Alloiococcus, Alteromonas, Amycolata, Amycolatopsis, Anaerobospirillum, Anaerorhabdus, Arachnia, Arcanobacterium, Arcobacter, Arthrobacter, Atopobium, Aureobacterium, Bacteroides, Balneafrix, Bartonella, Bergeyella, Bifidobacterium, Bilophila Branhamella, Borrelia, Bordetella, Brachyspira, Brevibacillus, Brevibacterium, Brevundimonas, Brucella, Burkholderia, Buttiauxella, Butyrivibrio, Calymmatobacterium, Campylobacter, Capnocytophaga, Cardiobacterium, Catonella, Cedecea, Cellulomonas, Centipeda, Chlamydia, Chlamydophila, Chromobacterium, Chyseobacterium, Chryseomonas, Citrobacter, Clostridium, Collinsella, Comamonas, Corynebacterium, Coxiella, Cryptobacterium, Delftia, Dermabacter, Dermatophilus, Desulfomonas, Desulfovibrio, Dialister, Dichelobacter, Dolosicoccus, Dolosigranulum, Edwardsiella, Eggerthella, Ehrlichia, Eikenella, Empedobacter, Enterobacter, Enterococcus, Erwinia, Erysipelothrix, Escherichia, Eubacterium, Ewingella, Exiguobacterium, Facklamia, Filifactor, Flavimonas, Flavobacterium, Francisella, Fusobacterium, Gardnerella, Globicatella, Gemella, Gordona, Haemophilus, Hafnia, Helicobacter, Helococcus, Holdemania, Ignavigranum, Johnsonella, Kingella, Klebsiella, Kocuria, Koserella, Kurthia, Kytococcus, Lactobacillus, Lactococcus, Lautropia, Leclercia, Legionella, Leminorella, Leptospira, Leptotrichia, Leuconostoc, Listeria, Listonella, Megasphaera, Methylobacterium, Microbacterium, Micrococcus, Mitsuokella, Mobiluncus, Moellerella, Moraxella, Morganella, Mycobacterium, Mycoplasma, Myroides, Neisseria, Nocardia, Nocardiopsis, Ochrobactrum, Oeskovia, Oligella, Orientia, Paenibacillus, Pantoea, Parachlamydia, Pasteurella, Pediococcus, Peptococcus,.Peptostreptococcus, Photobacterium, Photorhabdus, Plesiomonas, Porphyrimonas, Prevotella, Propionibacterium, Proteus, Providencia, Pseudomonas, Pseudonocardia, Pseudoramibacter, Psychrobacter, Rahnella, Ralstonia, Rhodococcus, Rickettsia, Rochalimaea, Roseomonas, Rothia, Ruminococcus, Salmonella, Selenomonas, Serpulina, Serratia, Shewenella, Shigella, Simkania, Slackia, Sphingobacterium, Sphingomonas, Spirillum, Staphylococcus, Stenotrophomonas, Stomatococcus, Streptobacillus, Streptococcus, Streptomyces, Succinivibrio, Sutterella, Suttonella, Tatumella, Tissierella, Trabulsiella, Treponema, Tropheryma, Tsakamurella, Turicella, Ureaplasma, Vagococcus, Veillonella, Vibrio, Weeksella, Wolinella, Xanthomonas, Xenorhabdus, Yersinia, and Yokenella; e.g. gram-positive bacteria such as, M. tuberculosis, M. bovis, M. typhimurium, M. bovis strain BCG, BCG substrains, M. avium, M. intracellular, M. africanum, M. kansasii, M. marinum, M. ulcerans, M. avium subspecies paratuberculosis, Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus equi, Streptococcus pyogenes, Streptococcus agalactiae, Listeria monocytogenes, Listeria ivanovii, Bacillus anthracis, B. subtilis, Nocardia asteroides, Actinomyces israelii, Propionibacterium acnes, Clostridium perfringens, Clostridium tetani, Clostridium botulinum, and Enterococcus species and Gram-negative bacteria such as Pseudomonas aeruginosa, Vibrio cholerae, Actinobacillus pleuropneumoniae, Pasteurella haemolytica, Pasteurella multocida, Legionella pneumophila, Salmonella typhi, Brucella abortus, Coxiella burnetii, Escherichia coli, Neiserria meningitidis, Neiserria gonorrhea, Haemophilus influenzae, Haemophilus ducreyi, Yersinia pestis, Yersinia enterolitica, Escherichia coli, E. hirae, Burkholderia cepacia, Burkholderia pseudomallei, Burkholderia mallei, Burkholderia multivorans, Francisella tularensis, Bacteroides fragilis, Fusobascterium nucleatum, Cowdria ruminantium. Moraxella catarrhalis, Klebsiella pneumoniae, Proteus mirabilis, Enterobacter cloacae, Serratia marcescens, Helicobacter pylori, Salmonella enteritidis, Salmonella typhi and Acinetobacter baumannii, Acinetobacter Iwoffi, Providencia stuartii, Providencia rettgeri, Providencia alcalifaciens and Klebsiella oxytoca and Gram non-responsive bacteria such as Chlamydia trachomatis and Chlamydia psittaci.
Preferably the bacteria are selected from the following genera: Achromobacter, Acinetobacter, Actinobacillus, Aeromonas, Agrobacterium, Alcaligenes, Alteromonas, Bacteroides, Bartonella, Borrelia, Bordetella, Brucella, Burkholderia, Campylobacter, Cardiobacterium, Chlamydia, Chlamydophila, Chromobacterium, Chyseobacterium, Chryseomonas, Citrobacter, Clostridium, Comamonas, Corynebacterium, Coxiella, Cryptobacterium, Edwardsiella, Eikenella, Enterobacter, Enterococcus, Erwinia, Kingella, Klebsiella, Lactobacillus, Lactococcus, Legionella, Leptospira, Leptotrichia, Leuconostoc, Listeria, Listonella, Mobiluncus, Moraxella, Morganella, Mycobacterium, Mycoplasma, Neisseria, Nocardia, Nocardiopsis, Pantoea, Parachlamydia, Pasteurella, Peptococcus, Peptostreptococcus, Prevotella, Propionibacterium, Proteus, Providencia, Pseudomonas, Ralstonia, Rickettsia, Salmonella, Shewenella, Shigella, Sphingobacterium, Sphingomonas, Staphylococcus, Stenotrophomonas, Streptobacillus, Streptococcus, Streptomyces, Treponem and Yersinia
In certain embodiments the bacteria are selected from the genera, Acinetobacter, Klebsiella, Providencia, Pseudomonas and Burkholderia, e.g. the bacteria are from a species selected from Acinetobacter baumannii, Acinetobacter baylyi, Acinetobacter bouvetii, Acinetobacter calcoaceticus, Acinetobacter gerneri, Acinetobacter grimontii, Acinetobacter haemolyticus, Acinetobacter johnsonii, Acinetobacter junii, Acinetobacter Iwoffii, Acinetobacter parvus, Acinetobacter radioresistens, Acinetobacter schindleri, Acinetobacter tandoii, Acinetobacter tjernbergiae, Acinetobacter towneri, Acinetobacter ursingii, Klebsiella granulomatis, Klebsiella oxytoca, Klebsiella pneumoniae, Klebsiella singaporensis, Klebsiella variicola, Providencia stuartii, Providencia sneebia, Providencia rettgeri, Providencia rustigianii, Providencia heimbachae, Providencia burhodogranariea, Providencia alcalifaciens, Pseudomonas aeruginosa, Pseudomonas alcaligenes, Pseudomonas anguilliseptica, Pseudomonas argentinensis, Pseudomonas borbori, Pseudomonas citronellolis, Pseudomonas flavescens, Pseudomonas mendocina, Pseudomonas nitroreducens, Pseudomonas oleovorans, Pseudomonas pseudoalcaligenes, Pseudomonas resinovorans, Pseudomonas straminea.Pseudomonas cremoricolorata, Pseudomonas fulva, Pseudomonas monteilii, Pseudomonas mosselii, Pseudomonas oryzihabitans, Pseudomonas parafulva, Pseudomonas plecoglossicida, Pseudomonas putida, Pseudomonas balearica, Pseudomonas luteola, and Pseudomonas stutzerj Burkholderia ambifaria, Burkholderia andropogonis, Burkholderia anthina, Burkholderia brasilensis, Burkholderia caledonica, Burkholderia caribensis, Burkholderia caryophylli, Burkholderia cenocepacia, Burkholderia cepacia, Burkholderia dolosa, Burkholderia fungorum, Burkholderia gladioli, Burkholderia glathei, Burkholderia glumae, Burkholderia graminis, Burkholderia hospita, Burkholderia kururiensis, Burkholderia mallei, Burkholderia multivorans, Burkholderia phenazinium, Burkholderia phenoliruptrix, Burkholderia phymatum, Burkholderia phytofirmans, Burkholderia plantarii, Burkholderia pseudomallei, Burkholderia pyrrocinia, Burkholderia sacchari, Burkholderia singaporensis, Burkholderia sordidicola, Burkholderia stabilis, Burkholderia terricola, Burkholderia thailandensis, Burkholderia tropica, Burkholderia tuberum, Burkholderia ubonensis, Burkholderia unamae, Burkholderia vietnamiensis, and Burkholderia xenovorans. The Burkholderia species are of particular note, especially Burkholderia cepacia, Burkholderia multivorans, Burkholderia pseudomallei and Burkholderia mallei; e.g. Burkholderia cepacia.
Thus, the bacteria may be Gram positive or Gram negative bacteria, or indeed Gram-indeterminate bacteria. Gram-negative bacteria, for instance those particularised above, are of importance. Within the Gram-negative bacteria the Enterobacteriaceae and the Gram-negative bacteria non-fermenting bacteria are of particular note.
Enterobacteriaceae include, but are not limited to, bacteria from the genera Alishewanella, Alterococcus, Aquamonas, Aranicola, Azotivirga, Brenneria, Budvicia, Buttiauxella, Cedecea, Citrobacter, Cronobacter, Dickeya, Edwardsiella, Enterobacter, Erwinia, Escherichia, Ewingella, Grimontella, Hafnia, Klebsiella, Kluyvera, Leclercia, Leminorella, Moellerella, Morganella, Obesumbacterium, Pantoea, Pectobacterium, Phlomobacter, Photorhabdus, Plesiomonas, Pragia, Proteus, Providencia, Rahnella, Raoultella, Salmonella, Samsonia, Serratia, Shigella, Sodalis, Tatυmella, Trabulsiella, Wigglesworthia, Xenorhabdus, Yersinia, Yokenella. Preferred genera of Enterobacteriaceae include Escherichia, Klebsiella, Salmonella, Shigella, and Yersinia and Providencia.
Non-fermenting Gram-negative bacteria include, but are not limited to, bacteria from the genera Pseudomonas, Acinetobacter, Stenotrophomonas and Burkholderia, Achromobacter,-Algaligenes, Bordetella, Brevundimonas, Comamonas, Elizabethkingia (formerly Chryseobacterium), Methylobacterium, Moraxella, Ochrobactrum, Oligella, Psychrobacter, Ralstonia, Roseomonas, Shewanella, Sphingobacterium, e.g. Pseudomonas aeruginosa, Acinetobacter baumannii, Stenotrophomonas maltophilia, and Burkholderia spp..
Preferably the bacteria may be selected from the genera Pseudomonas, Acinetobacter, Burkholderia, Escherichia, Klebsiella, Streptococcus, Enterococcus, Providencia, Moraxalla, Staphylococcus, e.g. Pseudomonas aeruginosa, Acinetobacter baumannii, Burkholderia spp, E. coli, Klebsiella pneumoniae, Burkholderia cepacia, Burkholderia multivorans, Burkholderia mallei, Burkholderia pseudomallei, Acinetobacter Iwoffii, Providencia stuartii, Providencia rettgeri, Providencia alcalifaciens, Klebsiella oxytoca, Pseudomonas anguilliseptica, Pseudomonas oryzihabitans, Pseudomonas plecoglossicida, Pseudomonas luteola, Moraxalla catarrhalis, Enterococcus faecium, Streptococcus oralis and MRSA. Thus, by way of representative example, the microorganism may be a bacteria of the genus Staphylococcus, Pseudomonas, Legionella, Mycobacterium, Proteus, Klebsiella, Fusobacterium or other enteric or coliform bacteria.
The microorganism may also be a fungus, including for example fungi that may be, or may have been classified as protista, e.g. a yeast or a mould (e.g. a red mould, a brown mould, a blue-green mould, a slime mould, a water mould), including for example fungi from the genera Candida, Cryptococcus, Histoplasma, Aspergillus, Coccidiodes, Paracoccidiodes, Blastomyces, Pneumocystis, Penicillium, Alternaria and Fusarium. Representative fungal species include, but are not limited to, Candida albicans, Candida dubliniensis, Cryptococcus neoformans, Histoplasma capsulatum, Aspergillus fumigatus, Coccidiodes immitis, Paracoccidiodes brasiliensis, Blastomyces dermitidis, Pneumocystis carnii, Penicillium marneffi, Alternaria alternate. In one embodiment the microorganism is not Candida albicans or Candida dubliniensis. In one embodiment the microorganism is not from the genus Candida. In one embodiment the microorganism is not a yeast.
The microorganism may also be an, or from an, algae, including for example algae that may be, or may have been classified as protista. Representative algal species include Chaetophora, Chlorella protothecoides, Coleochaete scutata, Coleochaete soluta, Cyanidioschyzon merolae Aphanochaete, Gloeotaenium, Oedogonium, Oocystis, Oscillatoria, Paradoxia multisitia, Phormidium, Chroococcus; Aphanothece, Fragillaria, Cocconis, Navicula, Cymbella, Phaeodactylum as well as cyanobacteria (blue-green algae) and diatoms such as Nitzschia palea.
The microorganism may also be a protozoa, e.g. a member of the groups Amoebae, Sporozoa, Ciliates, and Flagellates. Representative protozoa include Toxoplasma species e.g. Toxoplasma gondii; Plasmodium species such as Plasmodium falciparum; Plasmodium vivax, Plasmodium malariae; Trypanosoma species e.g. Trypanosoma brucei, Trypanosoma cruzil; Leishmania species such as Leishmania major, and Entamoeba species such as Entamoeba histolytica.
Preferably the microorganism is selected from following genera: Citrobacter, Enterobacter, Escherichia, Hafnia, Serratia, Yersinia, Peptostreptococcus, Bacteriodes, Pseudomonas, Legionella, Staphylococcus, Enterococcus, Streptococcus, Klebsiella, Candida, Proteus, Burkholderia, Fusobacterium and Mycobacterium, for instance, Staphylococcus aureus, Staphylococcus epidermidis, Legionella pneumophila, Candida albicans, Pseudomonas aeruginosa, Burkholderia cepacia and Streptococcus Pyogenes.
By the term "adherence" it is meant a stable and persistent interaction (i.e. not a transient interaction) between a microorganism and a surface that results in the microorganism maintaining a position in proximity to the surface.
Adherence of a microorganism to a surface typically involves two stages. The first is a non-specific process whereby the components of the exterior of the microorganism interact with the surface through non-specific weak molecular forces such as hydrophobic interactions, electrostatic interactions, hydrogen bonding, and Van der Waals forces. The strength of these interactions will depend on the chemical nature of the components of the exterior of the microorganism and the surface.
In favourable conditions the weak forces result in the microorganism persisting at a location in proximity to the surface. This interaction may be sufficiently stable to be considered adherence. However, disruption of these nonspecific forces and therefore disruption of the interaction between the microorganism and that surface can occur relatively easily. If the surface also has molecules complementary to molecules on the exterior of the microorganism, specific molecular interactions can take place. These interactions are more intimate and therefore stronger. Accordingly, once a microorganism has engaged with the surface in this way, disruption of those interactions is more difficult and less likely to occur. Such interactions are more likely to give rise to the stable and persistent interactions characteristic of adherence but attachment through nonspecific interactions can often be sufficient to cause adherence. In some instances the specific interactions will occur concomitantly with the formation of the weak nonspecific interactions. In some instances microorganisms will upregulate or initiate expression of molecules on or in its exterior (e.g. proteins, polysaccharides, lipids) that will be able to engage in a specific interaction with molecules on or making up the surface. This is especially the case when the surface is biotic.
The molecules and/or structures through which microorganisms interact specifically with molecules on the surface are adhesins (also known as adherence factors). Representative examples include, but are not limited to, filamentous hemagglutinin, fimbriae, the glycocalyx, lectins, pili, the S-layer, slime, teichoic acids and lipoteichoic acids. The molecules to which adhesins bind include, but are not limited to, saccharides (e.g. D-mannose, galactose, sialic acid), proteins (e.g. fibropectin), and lipids (e.g. ceramide).
Although the exact details are not known, and without wishing to be bound by theory, it is believed that alginate oligomers interfere with these adherence mechanisms, e.g. by physically preventing the weak non-specific and/or the stronger specific interactions from forming or breaking up existing interactions by competing for binding sites on the surface and/or on the microorganism.
By "inhibition of adherence" it is meant that the adherence of a non-adhered microorganism to a surface, that may or may not already have one or more microorganisms adhered thereto, is prevented or reduced, or the microorganism is not able to adhere as strongly and/or as stably. When referring to a population of microorganisms "inhibition" also covers a reduction in the numbers of or the rate at which non-adhered microorganisms adhere to a surface. In one embodiment the rate or number of non-adhered microorganisms adhering to a surface is reduced by at least 50%, at least 60%, at least 70%, at least 80%, at least 85%, at least 95% or at least 99%. .In one embodiment the rate or number of non-adhered microorganisms adhering to a surface is reduced by 100%. In other words, the adherence per se of non-adhered microorganisms to a surface is essentially, preferably substantially, e.g. completely, prevented.
Inhibition of adherence includes also disruption of adherence. By this is meant the dislodgement of a microorganism that has adhered to a surface or a reduction in the strength or stability of the adherence of the microorganism to the surface. In one embodiment at least 50%, at least 60%, at least 70%, at least 80%, at least 85%, at least 90%, at least 95% or at least 99% of the microorganisms adhered to a surface are dislodged from the surface. In one embodiment 100% of the microorganisms adhered to a surface are dislodged, i.e. substantially all, essentially all or completely all adhered microorganisms are dislodged from the surface.
As with any biological system, the adherence of a population of microorganisms to a surface is not a static process and the numbers of adhered microorganisms observed at any moment is in fact a representation of the dynamic state of the system. Thus, a reduction of the numbers of microorganisms adhered to a surface may be a function of the disruption of adherence and/or the inhibition of adherence of microorganisms joining or rejoining the population. Thus it may be convenient to consider the method of the invention as a method to control the numbers of microorganisms on a surface. In accordance with the invention the alginate oligomers can be used to reduce the number of-microorganisms adhered to a surface, preferably the number of microorganisms adhered to a surface is reduced by at least 50%, at least 60%, at least 70%, at least 80%, at least 85%, at least 90%, at least 95%, at least 99% e.g. 100%. In other words the surface will be rendered substantially free, essentially free, or completely free of adhered microorganisms by treatment with the alginate oligomers of the invention.
Such functionality enables the method of the invention to be used to control the growth of microorganism populations on a surface and to combat contamination of a surface. In the extreme the method of the invention can prevent the contamination (i.e. maintain sterility) or decontaminate a surface.
Adherence of microorganisms to a surface can be followed by any convenient means and many routine approaches are available. A common approach is to label microorganisms as this allows easy calculation of the numbers of microorganisms adhered to a surface at a given time. Changes in these numbers gives vital information about the impact a treatment is having on adherence. The strength or stability of the adherence of microorganisms to surfaces can also be followed by calculating microorganism numbers before and after treatments designed to physically or chemically dislodge adhered microorganisms, e.g. washing techniques (with or without pressure or raised temperature) or washing with solutions of elevated salt concentrations or extremes of pH. The adherence of a microorganism to a surface can also be measured at a molecular level by detecting the formation/disruption of the interactions between the microorganism and the surface. Tools to measure the binding of two or more molecular entities (e.g. bispecific antibodies) are available and can be prepared without undue burden.
Differential labelling of adhered and non-adhered microorganisms allows the adherence of non-adhered microorganisms and the dislodgement of adhered microorganisms to be monitored. Differential labelling strategies, in particular by targeting specific microbial components, can be easily devised to yield additional information. Suitable labels include, but are not limited to, fluorescent dyes/proteins, luminescent dyes/enzymes, colorimetric dyes/enzymes, radioactive labels, and antibodies and other binding proteins linked to these labels. Suitable detection means for these labels will be familiar to the skilled man. Radiolabels can for instance be detected with X-ray film or scintillation counters. Colorimetric, luminescent or fluorescent labels can be detected and may be quantified visually, typically with the aid of a microscope, or mechanically e.g. by fluorescent activated cell sorting (FACS), flow cytometry, or mechanical automatic cell counters. Methods in which quantitative data are obtained are preferred.
Examples of suitable microorganism labels include, but are not limited to, propidium iodide, ethidium bromide, Gram stain, Giemsa stain, SYBR green, haemotoxilin, DAPI, eosin, acridine orange, rhodamine, FM® 1-43, SYT09 crystal violet, and microorganism binding proteins (e.g. antibodies) labelled with FITC, GFP, YFP, GFP, alkaline phosphatase, horseradish peroxidase, luciferase or β- galactosidase, heavy metals e.g. silver, gold, tungsten and salts thereof.
In one embodiment of the method of the invention it is the adherence of live prokaryotic or eukaryotic microorganisms that is inhibited or disrupted as such microorganisms are capable of leading to disease, spoilage, pollution or other detrimental actions. The disruption or inhibition of the adherence of dead (nonviable) prokaryotic or eukaryotic microorganisms may also be desirable as such entities can still be immunogenic or associated with toxins and other molecules associated with disease, food spoilage, pollution or other detrimental actions.
A microorganism is considered to be alive if it can be induced to grow and replicate, or at least display morphological changes, when placed in a medium that would normally support the growth of that microorganism and/or the microorganism is metabolising nutrients to release energy to support cellular functions. Typically, a microorganism can be considered to be dead if Cell membrane integrity is lost.
Many routine assays are available to determine if a microorganism is alive or dead. One option is to place the microorganism in conditions that would normally support the growth of that microorganism and monitor the growth of the microorganism by appropriate standard means, e.g. by monitoring the size of the microorganism, the morphology of the microorganism, the number of microorganisms in the colony over time, the consumption of nutrients in the culture media, etc.
Another option is to measure the metabolism of the microorganism. This can be done routinely in a number of ways. For instance the levels of ATP can be measured. Only living cells with intact membranes can synthesise ATP and, because ATP is not stored in cells, levels of ATP drop rapidly upon cell death. Monitoring ATP levels therefore gives an indication of the status of the microorganism. A yet further option is to measure the reducing potential of the cell. Viable microorganisms metabolising nutrients use reducing reactions, by applying a marker that gives different outputs whether in reduced or oxidised form (e.g. a fluorescent dye) to the microorganism, the microorganism's reducing potential can be assessed. • Microorganisms that lack the ability to reduce the marker can be considered to be dead. The MTT and MTS assays are convenient examples of this type of assay.
Another option is to assess the microorganism for morphologies characteristic of cell death, e.g. necrotic or apoptotic bodies, membrane blebs, nuclear condensation and cleavage of DNA into regularly sized fragments, ruptured cell walls or membranes and leakage of cell contents into the extracellular environment. •
Other methods exploit the characteristic loss of cell membrane integrity in dead (non-viable) microorganisms. Membrane impermeable dyes (e.g. trypan blue and propidium iodide) are routinely used to assess membrane integrity. These dyes are excluded from intact microorganisms and so no staining occurs in such microorganisms. If cell membrane integrity is compromised, these dyes can access the microorganism and stain intracellular components. Alternatively, or in addition, dyes that only stain microorganisms with intact membranes are used to give an indication of the viability of the cell. The Live/Dead Assay of Invitrogen Ltd is an assay that uses two dyes, one to stain dead cells, the other to stain live cells. If these types of dyes are chosen as the labels for microorganisms discussed above the data obtained contains information about the adherence of live (and dead) microorganisms.
By "growth" of a microorganism is meant an increase in the size of the microorganism or in the amount and/or volume of the constituents of the microorganism (e.g. the amount of nucleic acid, the amount of protein the number of nuclei, the numbers or size of organelles, the volume of cytoplasm) or an increase in the numbers or a microorganism i.e. an increase in the replication of an organism. Typically growth of a microorganism is accompanied by the enlargement of the microorganism. The growth of microorganisms can be measured with routine techniques. For instance, microscopic examination of cell morphology over time, or assays to measure changes in the quantities of protein or nucleic acid (e.g. DNA) in general, or the changes in the quantities of specific proteins or nucleic acids, can be used. The skilled man would easily be able to select suitable markers to follow. Conveniently, so called house keeping genes (e.g. β-actin, GAPDH (glyceraldehyde 3-phosphate dehydrogenase), SDHA (succinate dehydrogenase), HPRT1 (hypoxanthine phosphoribosyl transferase 1), HBS1L (HBS1-like protein), AHSP (alphahaemoglobin stabilising protein), and β-2M (beta-2-microglobulin)), 16S RNA, and their expression products can be monitored.
By "replication" of a microorganism it is meant the act by which a microorganism reproduces. In the case of a microorganism this is typically by binary fission where a cell divides into two, but can also be by budding mechanisms where multiple progeny can arise from a cell. To support the division of the microorganism cell into two, binary fission is normally preceded by enlargement of the dividing microorganism and an increase in the amount and/or volume of cellular constituents. Replication results in an increase in the number of cells and so may be followed by any method of assessing microorganism numbers in a population. Another option is to follow the process in real time by visual examination with a microscope. The time it takes for a cell to replicate (i.e. produce another version of itself) is the generation time. Generation time will depend on the type of microorganism, its mode of replication and the conditions in which the microorganism is found. The rate of replication can be expressed in terms of the generation time.
Another method of determining the amount of live cells adhered to a surface at any one time is to use the Miles-Misra method to calculate the number of colony forming units (CFU's) that can be obtained from the surface. This technique involves the growth and replication of microorganisms obtained from the surface to form colonies. Because only live cells can form colonies the count is representative of the amount of live cells on the surface.
The term "contacting" encompasses any means of delivering the alginate oligomer to the surface and/or the microorganism, whether directly or indirectly, and thus any means of applying the alginate oligomer to the surface and/or the microorganism or exposing the surface and/or microorganism to the alginate oligomer, e.g. applying the alginate oligomer directly to the surface and/or microorganism, or administering the alginate oligomer to a subject within which or on which the surface and/or microorganism is present, e.g. subjects with a microbial infection of a body surface or location underlying a body surface accessible to a microorganism through the surface, may be used. It will be appreciated therefore that both in vitro and in vivo methods are included. Preferably it is the surface that is treated with the oligomers of the invention. In one embodiment the surface is pretreated with the alginate oligomer before exposure to microorganisms or at least prior to a new or further exposure to microorganisms, e.g. at least 6 hours, at least 4 hours, at least 2 hours, at least 1 hour or at least 30 minutes, e.g. immediately before the exposure. In other embodiments the surface will comprise the alginate oligomer (e.g. as a coating or an integral part thereof).
More particularly the surface and/or microorganism will be contacted with an effective amount of the alginate oligomer, more particularly an amount of the alginate oligomer effective to inhibit the adherence of the microorganism to the surface.
An "effective amount" of the alginate oligomer is that amount of alginate oligomer that results in the inhibitory effects described above. The skilled man would easily be able to determine what an effective amount of alginate oligomer would be on the basis of routine dose response protocols and, conveniently, the routine techniques for assessing inhibition of microorganism adherence discussed above.
The surface is only limited in so far as it is a surface on which or to which a microorganism may adhere. Typically the surface will be solid, semisolid, a gel or a gel sol. Typically the surface will not be the surface of a liquid. The surface may be biotic or abiotic, and inanimate (or abiotic) surfaces include any such surface which may be exposed to microorganism contact or contamination. Thus, particularly included are Surfaces on machinery, notably industrial machinery, or medical equipment or any surface exposed to an aquatic environment (e.g. marine equipment, or ships or boats or their parts or components), or any surface exposed to any part of the environment, e.g. pipes or on buildings. Such inanimate surfaces exposed to microorganism contact or contamination include in particular any part of: food or drink processing, preparation, storage or dispensing machinery or equipment, air conditioning apparatus, industrial machinery, e.g. in chemical or biotechnological processing plants, storage tanks, medical or surgical equipment and cell and tissue culture equipment. In one embodiment the surface is a cell culture plate. Any apparatus or equipment for carrying or transporting or delivering materials is susceptible to microbiological/microbial contamination. Such surfaces will include particularly pipes (which term is used broadly herein to include any conduit or line). Representative inanimate or abiotic surfaces include, but are not limited to food processing, storage, dispensing or preparation equipment or surfaces, tanks, conveyors, floors, drains, coolers, freezers, equipment surfaces, walls, valves, belts, pipes, air conditioning conduits, cooling apparatus, food or drink dispensing lines, heat exchangers, boat hulls or any part of a boat's structure that is exposed to water, dental waterlines, oil drilling conduits, contact lenses and storage cases.
As noted above, medical or surgical equipment or devices represent a particular class of surface on which microbial contamination may form. This may include any kind of line, including catheters (e.g. central venous and urinary catheters), prosthetic devices e.g., heart valves, artificial joints, false teeth, dental crowns, dental caps and soft tissue implants (e.g. breast, buttock and lip implants). Any kind of implantable (or "in-dwelling") medical device is included (e.g. stents, intrauterine devices, pacemakers, intubation tubes (e.g. endotracheal or tracheostomy tubes), prostheses or prosthetic devices, lines or catheters). An "indwelling" medical device may include a device in which any part of it is contained within the body, i.e. the device may be wholly or partly in-dwelling.
The surface can be made of any material. For example it may be metal, e.g. aluminium, steel, stainless steel, chrome, titanium, iron, alloys thereof, and the like. The surface can also be plastic, for example, polyolefin (e.g., polyethylene, (Ultra- High Molecular Weight) polyethylene, polypropylene, polystyrene, poly(meth)acrylate, acrylonitrile, butadiene, ABS, acrylonitrile butadiene, etc.), polyester (e.g., polyethylene terephthalate, etc.), and polyamide (e.g., nylon), combinations thereof, and the like. Other examples include acetal copolymer, polyphenylsulfone, polysulfone, polythermide, polycarbonate, polyetheretherketone, polyvinylidene fluoride, poly(methyl methacrylate) and poly(tetrafluoroethylene). The surface can also be brick, tile, ceramic, porcelain, wood, vinyl, linoleum, or carpet, combinations^thereof, and the like. The surfaces can also be food, for example, beef, poultry, pork, vegetables, fruits, fish, shellfish, combinations thereof, and the like.
A biotic or animate surface may include any surface in or on an animal, plant or fungal body. It may accordingly be viewed as a "physiological" or "biological" surface. It may be any internal or external body surface, including of any tissue or organ. Dead or dying (e.g. necrotic) or damaged (e.g. inflamed or disrupted or broken) tissue is particularly susceptible to microbiological contamination, and such tissue is encompassed by the term "animate" or "biotic". The surface may be a mucosal or non-mucosal surface. Representative biotic surfaces include, but are not limited to, any surface in the oral cavity (e.g. teeth, gingiva, gingival crevice, periodontal pocket) the reproductive tract (e.g. cervix, uterus, fallopian tubes), the peritoneum, middle ear, prostate, urinary tract, vascular intima, eye, i.e. ocular tissue (e.g. the conjunctiva, corneal tissue, lachrymal duct, lachrymal gland, eyelid) the respiratory tract, lung tissue (e.g. bronchial and alveolial), heart valves, gastrointestinal tract, skin, scalp, nails and the interior of wounds, particularly chronic wounds and surgical wounds, which may be topical or internal wounds. Other surfaces include the exterior of organs, particularly those undergoing transplantation, for example, heart, lungs, kidney, liver, heart valve, pancreas, intestine, arterial and venous grafts, corneal tissue and skin. In an important aspect of the invention transplant tissues/organs may be treated with the alginate oligomers of the invention prior to implantation to prevent or reduce microbial contamination of the tissues/organs through the inhibition or disruption of the adherence of microorganisms to the tissues/organs.
In one aspect the surface will not be mucosal, or more particularly will not have a hyperviscous mucus coating. The skilled person will be able to determine when the mucus at a given surface is hyperviscous. In one embodiment the surface will not be the surface of a mucus-secreting tissue. More particularly in such an embodiment the surface will not be the surface of a mucus-coated tissue. The skilled person will know from his common general knowledge the tissues that secrete mucus and those that are mucus-coated. In particular, in one embodiment the surface will not be the surface of the intestinal tract or the surface of an established or partially established biofilm.
In one embodiment the microorganism will not be in a biofilm. Put differently, the microorganism will not be in a biofilm mode of growth; or will be in a non-biofilm mode of growth.
By "biofilm" it is meant a community of microorganisms characterized by a predominance of sessile cells that are attached to a substratum or interface or to each other (some motile cells may also be present) and that are embedded in a matrix of extracellular polymers (more specifically extracellular polymers that they have produced) characterised in that the microorganisms of this colony exhibit an altered phenotype with respect to growth rate and gene transcription (for example as compared to their "non-biofilm" or free-floating or planktonic counterparts). By "in a biofilm" it is meant that the microorganism is within (completely or in part), on or associated with the polymer matrix of a biofilm. Viewed differently, microorganisms that are "not in a biofilm" are microorganisms that are either in isolation, e.g. planktonic, or if in an aggregation of a plurality of microorganisms, that aggregation is unorganised and/or is devoid of the matrix characteristic of a biofilm. In each case, the individual microorganisms do not exhibit an altered phenotype that may be observed in their biofilm dwelling counterparts.
From the forgoing it is clear that the alginate oligomers of the invention, i.e. those described above, have medical and non-medical applications.
Thus, in this aspect the invention provides a method for inhibiting the adherence of a microorganism to a surface in a subject, said method comprising administering .a pharmaceutically effective amount of an alginate oligomer (which may be any alginate oligomer as herein defined) to a subject in need thereof. The step of administering the alginate oligomer may result in the surface and/or the microorganism contacting the alginate oligomer, or may cause the surface and/or the microorganism to contact the alginate oligomer.
Also provided is an alginate oligomer for use in inhibiting the adherence of a microorganism to a surface in a subject.
Alternatively put, this aspect the invention provides the use of an alginate oligomer for the manufacture of a medicament for inhibiting the adherence of a microorganism to a surface in a subject.
These aspects of the invention can also be seen to provide an alginate oligomer for use in combating, and in particular in the treatment of, microbial infection of a surface in an subject, or the use of an alginate oligomer in the manufacture of a medicament for use in combating, and in particular in the treatment of, microbial infection of a surface in a subject. It will be seen in this aspect that the infection may be combated by inhibiting the adherence of a microorganism to a surface in a subject.
The sgbject may be any human or non-human animal subject, but more particularly may be a vertebrate, e.g. an animal selected. from mammals, birds, amphibians, fish and reptiles. The animal may be a livestock or a domestic animal or an animal of commercial value, including laboratory animals or an animal in a zoo or game park. Representative animals therefore include dogs, cats, rabbits, mice, guinea pigs, hamsters, horses, pigs, sheep, goats, cows, chickens, turkeys, guinea fowl, ducks, geese, parrots, budgerigars, pigeons, salmon, trout, cod, haddock, sea bass and carp. Veterinary uses of the invention are thus covered. The subject may be viewed as a patient. Preferably the subject is a human. The term "in a subject" is used broadly herein to include locations inside a subject or on a subject, e.g. an external body surface.
In one embodiment the method of this aspect of the invention may comprise a step in which the subject will be diagnosed as a candidate that would benefit from having the adherence of a microorganism to a surface in it inhibited. In another embodiment the method of the invention may further comprise a step in which the microorganism to be targeted by the treatment will be determined as not being in a biofilm.
The ability of alginate oligomers to inhibit the adherence of a microorganism to a surface makes them suited to the combat of microorganism populations, including non-biofilm populations of microorganisms. Populations on a surface can be combated directly and populations at locations underlying a surface that arise as a consequence of the presence of a microorganism population on the surface, may be combated indirectly by the effects exerted on the surface or surface population.
Thus the methods and uses of the present invention to inhibit microbial adherence may be used to combat a population of microorganisms on a surface, or at a location underlying a surface. In general such a method of combating a population of microorganisms would comprise contacting said surface and/or microorganisms with an alginate oligomer as defined herein.
More particularly the surface and/or microorganisms will be contacted with an amount of the alginate oligomer effective to inhibit and/or disrupt the adherence of the microorganisms to the surface.
In one embodiment of this aspect the microorganisms or the population" thereof will not be in a biofilm or will not be in the process of forming a biofilm. For instance, the microorganisms or the population thereof will not be capable of biofilm formation or the plurality of microorganisms in the population are not of sufficient number or at a lifecycle stage that permits biofilm formation.
A population of microorganisms is considered to be at least 1000 cells, e.g. at least 105, 106, 107, 108or 109 microorganisms. The population of microorganisms may be homogenous (i.e. contain a single type of microorganism) or may be heterogeneous (i.e. contain a plurality of types of microorganisms). For example, any or all of the various microorganisms described above may be found in the population. Preferably some or all of the microorganisms in the population will be pathogenic. The population may be an established population or be a partially established population. In other words the surface to be treated has previously been colonised by at least one microorganism that has multiplied or recruited other microorganisms to establish the population.
By "combat a population of microorganisms" it is meant that the formation of the population is prevented or the growth of the population is controlled.
By "control the growth of a population" it is meant that the rate of expansion of the overall number of cells in the population is reduced. Preferably the rate of expansion is reduced by at least 50%, more preferably at least 75%, 85%, 95% or 99%. Most preferably the expansion is essentially stopped or reversed, i.e. the overall number of cells in the population is maintained or reduced. Preferably overall number of live (or viable) cells in the population is reduced by at least 50%, more preferably at least 75%, 85%, 95% or 99%. Most preferably the population is substantially or completely eradicated. By substantially eradicated it is meant that the population contains few, or virtually no live (or viable) microorganisms.
The term "prevent the formation of a population " covers the prevention of the adherence of microorganisms to a surface and also the prevention of a small number (sub-population number) of adhered microorganisms from expanding to reach population size, e.g. by inhibiting the adherence of further microorganisms to the surface or by disrupting the adherence of microorganisms that are already adhered.
The surface is not restricted and may be any surface to which, or on which, microorganisms adhere. The various surfaces described above apply here also. The location underlying a surface will be a location that is accessible to the microorganisms through a surface and that can support (i.e. is susceptible to) microbial invasion. For instance, the surface and the location underlying the surface might be formed from a material that is porous or permeable or that can be compromised by a microorganism. Objects formed from biotic materials (e.g. tissues and organs), meet these functional requirements although permeable, porous and compromisable abiotic objects also exist, e.g. certain stones, ceramic, porcelain, cement mortar, grout, paint films, filters, food and biodegradable materials. The location will typically be in the immediate vicinity of a surface, but the location may also be a greater distance away if the material underlying the surface permits, or can be induced to permit, the migration of the microorganisms through it.
Thus, in this aspect the invention provides a method to combat a population of microorganisms on a surface, or at a location underlying a surface, in a subject, said method comprising administering a pharmaceutically effective amount of an alginate oligomer (which may be any alginate oligomer as herein defined) to a subject in need thereof. The step of administering the alginate oligomer may result in the contacting of the surface and/or the microorganism with the alginate oligomer, or may cause the surface and/or the microorganism to contact the alginate oligomer'
Also provided is an alginate oligomer for use in combating a population of microorganisms on a surface, or at a location underlying a surface, in a subject.
Alternatively put, this aspect the invention provides the use of an alginate oligomer for the manufacture of a medicament for combating a population of microorganisms on a surface, or at a location underlying a surface, in a subject.
In one embodiment the method of this aspect of the invention may comprise a step in which the subject will be diagnosed as a candidate that would benefit from having a population of microorganisms on a surface, or at a location underlying a surface, combated. In another embodiment the method of the invention may further comprise a step in which the population of microorganisms to be targeted by the treatment will be determined as not being, or in, a biofilm.
In a further aspect the invention provides a method for combating contamination of a surface, or at a location underlying a surface, by a microorganism said method comprising contacting the surface and/or the microorganism with an alginate oligomer.
More particularly the surface and/or microorganism will be contacted with an effective amount of the alginate oligomer, more particularly an amount of the alginate oligomer sufficient to inhibit and/or disrupt the adherence of the microorganism to the surface.
"Combating contamination" includes both preventative and reactionary measures or treatments and therefore covers the prevention as well as the reduction, limitation, or elimination of contamination of a surface/location.
By "contamination" it is meant the unwanted presence of a microorganism at a particular surface/location. In abiotic surfaces/locations this can be considered at its extreme to refer to the presence of any microorganism at the surface/location. When involving microorganisms, contamination can be considered to cover colonisation of a surface/location by the microorganism, i.e. the establishment of a microorganism at a surface/location and the expansion of the numbers of that microorganism by replication or the recruitment of additional microorganisms, which may be of the same or of a different type. In one embodiment the colonisation process will not involve the formation of a biofilm.
The microorganism can be any of the microorganisms described above. In one embodiment of this aspect the microorganism is not in a biofilm.
The contamination or potential contamination may be on any surface to which, or on which, microorganisms may adhere or any location underlying such a surface that is accessible to the microorganisms through the surface and that can support microbial invasion. Various surfaces and locations described above apply here also, e.g. the contamination can be in vitro or in vivo. Thus, the surface or location may be in a subject and in which case a therapeutically effective amount of the alginate oligomer is administered to the subject. In one embodiment the method of this aspect of the invention may comprise a step in which the subject will be diagnosed as a candidate that would benefit from having contamination at a surface or a location underlying a surface in it combated. In another embodiment the method of this aspect of the invention may further comprise a step in which the contaminating microorganism to be targeted by the treatment will be determined as not being, or in, a biofilm.
Alginate oligomers for use in such methods and the use of alginate oligomers in the manufacture of medicaments for use in such methods are also provided.
In one particular embodiment this aspect of the invention can be applied to the decontamination of clinical, scientific and industrial waste materials of microbiological contaminants. In another particular embodiment this aspect of the invention can be used to decontaminant transplant tissue (e.g. heart, lungs, kidney, liver, heart valve, pancreas, intestine, arterial and venous grafts and skin) prior to implantation.
In a still further aspect the invention provides a method for combating the infection of a surface or a location underlying a surface in a subject, said method comprising administering a pharmaceutically effective amount of an alginate oligomer to a subject in need thereof. Alginate oligomers for use in such treatments and the use of alginate oligomers in the manufacture of a medicament for use in such treatments are also provided.
"Combating an infection" can be viewed as the treatment or prevention of infection. The infection may be of any surface in the subject to which, or on which, a microorganism may adhere or any location underlying a surface in the subject that is accessible to the microorganism through the surface and that can support microbial invasion. The infection may be of any of the surfaces or any of the locations underlying a surface within an subject described above. The infection may be in the tissues or parts of the tissue of the subject underlying the surfaces mentioned above as invasion of the tissue can occur after attachment of the microorganisms to the surface of a tissue. By interfering with the mechanisms by which the microorganisms attach to the surface of the tissue, invasion and infection of the tissue can be combated. Administering the alginate to the subject preferably results in the surface of the subject's tissue being contacted with an alginate oligomer in an amount sufficient to inhibit and/or disrupt the adherence of the microorganism to the surface of the subject's tissues Particular tissues may be targeted by employing targeted drug delivery methods.
The microorganism can be any of the microorganisms, e.g. bacteria, fungi or protozoa described above although bacteria are of note. In particular, the infection may a pathogen infection e.g. a bacterial or fungal pathogen.
Representative examples of microorganisms that can cause infection are described above. For example the infection may be caused by bacteria from the following genera: Achromobacter, Acinetobacter, Actinobacillus, Aeromonas, Agrobacterium, Alcaligenes, Alteromonas, Bacteroides, Bartonella, Borrelia, Bordetella, Brucella, Burkholderia, Campylobacter, Cardiobacterium, Chlamydia, Chlamydophila, Chromobacterium, Chyseobacterium, Chryseomonas, Citrobacter, Clostridium, Comamonas, Corynebacterium, Coxiella, Cryptobacterium, Edwardsiella, Eikenella, Enterobacter, Enterococcus, Erwinia, Kingella, Klebsiella, Lactobacillus, Lactococcus, Legionella, Leptospira, Leptotrichia, Leuconostoc, Listeria, Listonella, Mobiluncus, Moraxella, Morganella, Mycobacterium, Mycoplasma, Neisseria, Nocardia, Nocardiopsis, Pantoea, Parachlamydia, Pasteurella, Peptococcus, Peptostreptococcus, Prevotella, Propionibacterium, Proteus, Providencia, Pseudomonas, Ralstonia, Rickettsia, Salmonella, Shewenella, Shigella, Sphingobacterium, Sphingomonas, Staphylococcus, Stenotrophomonas, Streptobacillus, Streptococcus, Streptomyces, Treponem and Yersinia.
Infections caused by Citrobacter, Enterobacter, Escherichia, Hafnia, Serratia, Yersinia, Peptostreptococcus, Bacteriodes, Pseudomonas, Legionella, Staphylococcus, Enterococcus, Streptococcus, Klebsiella, Candida, Proteus, Burkholderia, Fusobacterium and Mycobacterium, for instance, Staphylococcus aureus, Staphylococcus epidermidis, Legionella pneumophila, Candida albicans, Pseudomonas aeruginosa, Burkholderia cepacia and Streptococcus Pyogenes are of note. Infections caused by a Pseudomonas, e.g. Pseudomonas aeruginosa, are of particular note.
Further infections of note are those caused by the genera Pseudomonas, Acinetobacter, Burkholderia, Escherichia, Klebsiella, Streptococcus, Enterococcus, Providencia, Moraxalla, Staphylococcus, e.g. Pseudomonas aeruginosa, Acinetobacter baumannii, Burkholderia spp, E. coli, Klebsiella pneumoniae, Burkholderia cepacia, Burkholderia multivorans, Burkholderia mallei, Burkholderia pseudomallei, Acinetobacter Iwoffii, Providencia stuartii, Providencia rettgeri, Providencia alcalifaciens, Klebsiella oxytoca, Pseudomonas anguilliseptica, Pseudomonas oryzihabitans, Pseudomonas plecoglossicida, Pseudomonas luteola, Moraxalla catarrhalis, Enterococcus faecium, Streptococcus oralis and MRSA.
In one embodiment the infection is not an infection by Candida albicans or Candida dubliniensis. In one embodiment the infection is not a Candida infection. In another embodiment the infection is not a yeast infection.
The infection may be acute, or alternatively chronic, e.g. an infection that has persisted for at least 5 or at least 10 days, particularly at least 20 days, more particularly at least 30 days, most particularly at least 40 days.
In this aspect of the invention the infection may occur on a surface in or on the subject (i.e. a biotic surface as discussed above) and/or a surface of a medical device, particularly an implantable or "in-dwelling" medical device, representative examples of which are discussed above.
In one embodiment of this aspect the microorganism is not in a biofilm and the infection will not be or involve a biofilm (the infection can therefore be considered to be a non-biofilm infection). In one embodiment the method of this aspect of the invention may comprise a step in which the subject will be diagnosed as a candidate that is at risk of developing an infection at a surface or at a location underlying a surface in it or would benefit from having an infection at a surface or at a location underlying a surface in it treated. In another embodiment, the method of this aspect of the invention may further comprise a step in which the infection to be targeted by the treatment will be determined as not being, or involving, a biofilm (i.e. a non-biofilm infection). An infection can occur in any subject but some subjects will be more susceptible to infection than others. Subjects who are susceptible to infection include, but are not limited to, subjects whose epithelial and/or endothelial barrier is weakened or compromised, subjects whose secretion-based defences to microorganism infection have been abrogated, disrupted, weakened or undermined, and subjects who are immunocompromised, immunodeficient or immunosuppressed (i.e. a subject in whom any part of the immune system is not working normally, or is working sub-normally, in other words in whom any part of the immune response, or an immune activity is reduced or impaired, whether due to disease or clinical intervention or other treatment, or in any way).
Representative examples of subjects who are susceptible to infection include, but are not limited to, subjects with a pre-established infection (e.g. with bacteria, viruses, fungi or parasites such as protozoa), especially subjects with HIV, subjects with sepsis and subjects with septic shock; subjects with immunodeficiency, e.g. subjects preparing for, undergoing or recovering from chemotherapy and/or radiotherapy, organ (e.g. bone marrow, liver, lung, heart, heart valve, kidney, etc.) transplant subjects (including autograft, allograft and xenograft patients), subjects with AIDS; subjects resident in a healthcare institution, e.g. hospital, especially subjects in intensive care or critical care (i.e. those units concerned with the provision of life support or organ support systems to patients); subjects suffering from trauma; subjects with burns, subjects with acute and/or chronic wounds; neonatal subjects; elderly subjects; subjects with cancer (defined broadly herein to include any neoplastic condition; malignant or non-malignant), especially those with cancers of the immune system (e.g. leukaemias, lymphomas and other haematological cancers); subjects suffering from auto-immune conditions such as rheumatoid arthritis, diabetes mellitus type I, Crohn's disease, especially those undergoing immunosuppression treatment for those diseases; subjects with reduced or abrogated epithelial or endothelial secretion (e.g. mucous, tears, saliva) and/or secretion clearance (e.g. subjects with poorly functioning cilia on mucosal tissue and/or patients with hyperviscous mucous (e.g. smokers and subjects with COPD, COAD, COAP, bronchitis, cystic fibrous, emphysema, lung cancer, asthma, pneumonia or sinusitis)) and subjects fitted with a medical device.
Thus, subjects in whom infections may particularly be combated according to the present invention include patients who are impaired, whether due to poor perfusion, repetitive trauma, poor nutrition, poor oxygenation or white cell dysfunction.
Of particular note are subjects that have undergone physical trauma. The trauma itself might cause a weakening in or compromisation of an epithelial and/or endothelial barrier of the subject or the subject may become immunocompromised in response to the trauma (a shock response). The term "trauma" refers broadly to cellular attacK by foreign bodies and/or physical injury of cells. Included among foreign bodies are microorganisms, particulate matter, chemical agents, and the like. Included among physical injuries are mechanical injuries; thermal injuries, such as those resulting from excessive heat or cold; electrical injuries, such as those caused by contact with sources of electrical potential; and radiation damage caused, for example, by prolonged, extensive exposure to infrared, ultraviolet or ionizing radiations.
Also of particular note are subjects that have a burn. Any burn, in particular a severe burn, has a significant impact on the integrity of the epithelial and/or endothelial barrier of the subject and the subject will often become immunocompromised in response to the burn (a shock response).
Typical bum-causing agents are extremes of temperature (e.g. fire and liquids and gases at extreme temperature), electricity, corrosive chemicals, friction and radiation. The extent and duration of exposure, together with the intensity/strength of the agent, result in burns of varying severity. Scalding (i.e. trauma associated with high temperature liquids and/or gases) is considered to be a burn.
Epidermal burn severity is commonly classified in two ways. Most common is the classification by degree. First-degree burns are usually limited to erythema (redness) in the general area of the injury and a white plaque at the site of injury. The cellular trauma of these burns extends only as deep as the epidermis. Second- degree burns also display erythema in the general area of the injury but with superficial blistering of the epidermis. The cellular trauma of second-degree burns involves the superficial (papillary) dermis and may also involve the deep (reticular) dermis layer. Third-degree burns are those in which the epidermis is lost with damage to the hypodermis. Damage is typically extreme including charring. Sometimes eschar, (dry, black necrotic tissue) will be present. Third-degree burns may require grafting. In fourth-degree burns catastrophic damage of the hypodermis occurs, e.g. the hypodermis is completed lost, with damage extending to the underlying muscle, tendon, and ligament tissue. Charring and eschar are observed. Grafting is required if the"burn does not prove to be fatal.
Another common classification system is the classification by thickness. "Superficial thickness" burns correspond to first degree burns. The spectrum of second degree burns is covered by two classes of "partial thickness" burns. "Partial thickness-superficial" are burns that affect the epidermis only as far as the papillary dermis. "Partial thickness-deep" are burns that affect the dermis as far as the reticular dermis. "Full thickness" burns correspond to third and fourth degree burns.
Some physical injuries, e.g. some burns, and cellular attacks by foreign bodies result in the formation of a wound. More specifically a wound may be considered to be a breach in, or denudement of, a tissue. Wounds may also be caused by a spontaneously forming lesion such as a skin ulcer (e.g. a venous, diabetic or pressure ulcer), an anal fissure or a mouth ulcer.
Wounds are typically defined as either acute or chronic. Acute wounds are wounds that proceed orderly through the three recognised stages of the healing process (i.e. the inflammatory stage, the proliferative stage and the remodelling phase) without a protracted timecourse. Chronic wounds, however, are those wounds that do not complete the ordered sequence of biochemical events of the healing process because the wound has stalled in one of the healing stages. Commonly, chronic wounds are stalled in the inflammatory phase. In accordance with a particular aspect of the present invention, a chronic wound is a wound that has not healed within at least 40 days, particularly at least 50 days, more particularly at least 60 days, most particularly at least 70 days.
As discussed above, wounds are an ideal environment for infection, particularly chronic infection, due to their lack of an epithelial barrier and the availability of substrate and surface for microbial attachment and colonisation. Problematically, infection of a wound often delays healing further and thus renders that wound more susceptible to established infection. The alginate oligomers of the invention are therefore effective in the treatment and prevention of infection of wounds and the treatment of wounds, especially chronic wounds, represents one preferred aspect of the present invention.
Therefore, in an embodiment of the invention there is provided a method for the treatment or prevention of the infection of a surface or a location underlying a surface, particularly chronic infection of these surfaces/ locations in the above- mentioned subjects, in particular in subjects with respiratory diseases or disorders e.g. cystic fibrosis, COPD, COAD, COAP, wounds, burns and/or traumas, said method comprising administering a pharmaceutically effective amount of an alginate oligomer as defined herein to the subject.
In an aspect of particular importance, the alginate oligomers may be used to treat or prevent infection in wounds, e.g. burns, for example in the treatment of infected wounds, e.g. burns.
Through the ability to treat and prevent infection of wounds the alginate oligomers defined herein can remove one of the obstacles to wound healing and therefore the alginate oligomers defined above are also effective in the promotion of healing of acute and chronic wounds.
By promotion of healing it is meant that the treatment accelerates the healing process of the wound in question (i.e. the progression of the wound through the three recognised stages of the healing process). The acceleration of the healing process may manifest as an increase in the rate of progression through one, two or all of the healing stages (i.e. the inflammatory stage, the proliferative stage and/or the remodelling phase). If the wound is a chronic wound that is stalled in one of the healing stages the acceleration might manifest as the restarting of the linear, sequential healing process after the stall. In other words, the treatment shifts the wound from a non-healing state to a state where the wound begins to progress through the healing stages. That progression after the restart may be at a normal rate or even a slower rate compared with the rate a normal acute wound would heal.
In another embodiment, the infection may be an infection of a medical device, particularly an in-dwelling medical device.
The alginate oligomers may be used according to the present invention as oral healthcare agents, for example in the control of dental plaque, e.g. to reduce it or to prevent, reduce or delay its development, by inhibiting or disrupting the adherence of microorganisms to the surface of the teeth or dental/oral prostheses. The alginate oligomers may also be used in the treatment and prevention of infections or infectious disease which may occur in the oral cavity, for example gingivitis and periodontitis.
Conveniently, the alginate oligomers can be applied by any oral health/oral hygiene delivery system. This may be through the use of toothpastes, dental gels, dental foams and mouthwashes. Removable dentures and other removable dental prostheses may be treated outside of the oral cavity with the same compositions or other suitable pharmaceutically acceptable compositions. The alginate oligomers can also be incorporated into compositions that are applied to the oral cavity (or applied to removable dentures and other removable dental prostheses outside of the oral cavity) to form a coating that persists on surfaces over time, or that releases the alginate oligomers from the coated surfaces over time, and which inhibit or disrupt the adherence of bacteria to surfaces in the oral cavity and to the surfaces of removable dentures and other removable dental prostheses.
Whilst the treatment of infections of the lungs and respiratory tract and all surfaces and tissues of the body is generally covered by the present invention, in one embodiment, the medical uses of the invention are not directed to the treatment of (i) infections in the respiratory tract of patients suffering from COPD's (chronic obstructive pulmonary diseases), in particular the sinuses and the lungs, in particular in the treatment of cystic fibrosis, chronic obstructive pulmonary disease, emphysema, bronchitis and sinusitis; (ii) in the middle ear of patients suffering from glue ear; or (iii) in the reproductive tract of female patients with impaired fertility; or (iv) in the digestive tract of patients with digestive tract malfunction (e.g. constipation).
In specific embodiments of the invention the alginate oligomers may be used in the treatment of native valve endocarditis, acute otitis media, chronic bacterial prostatitis, pneumonia, (in particular ventilator associated pneumonia), dental plaque, periodontitis, respiratory diseases associated with infection (which may include COPD, COAD, COAP, pneumonia cystic fibrosis and asthma), and device related infection associated with implantable or prosthetic medical devices (e.g. prosthetic valve endocarditis or the infection of lines or catheters or artificial joints or tissue replacements, or endotracheal or tracheotomy tubes).
In further embodiments the alginate oligomers of the invention are used to control infections in the eye, e.g. to reduce them, or prevent, reduce or delay their development. In particular, the alginate oligomers of the invention are used to treat or prevent bacterial conjunctivitis and the resultant keratoconjunctivitis sicca (also known as dry .eye) that can result through the blockage of the lachrymal gland.
As mentioned previously, in one embodiment the above infections and associated conditions are not, or do not involve, biofilm, in other words they are non-biofilm infections.
A "pharmaceutically effective" amount of the alginate oligomer is the amount of alginate oligomer that provides a measurable inhibition or disruption of adherence of the targeted microorganism to the targeted surface (as defined above) and/or a measurable effect on the condition being targeted. This amount can be determined with reference to standard practices for deciding dosage amounts and the skilled man will be able to detect evidence of successful treatment from his experience and with the aid of routine tests available to him.
Suitable doses of alginate will vary from subject to subject and can be determined by the physician or veterinary practitioner in accordance with the weight, age and sex of the subject, the severity of the condition, the mode of administration and also the particular alginate oligomer selected. Typically the alginate oligomers of the invention will be applied to the location undergoing treatment at a local concentration of at least 0.5%, preferably at least 2% or at least 4%, more preferably at least 6% or at least 10% weight by volume.
"Treatment" when used in relation to the treatment of a medical condition/infection in a subject in accordance with the invention is used broadly herein to include any therapeutic effect, i.e. any beneficial effect on the condition or in relation to the infection. Thus, not only included is eradication or elimination of the infection, or cure of the subject or infection, but also an improvement in the infection or condition of the subject. Thus included for example, is an improvement in any symptom or sign of the infection or condition, or in any clinically accepted indicator of the infection/condition (for example a decrease in wound size or an acceleration of healing time). Treatment thus includes both curative and palliative therapy, e.g. of a pre-existing or diagnosed infection/condition, i.e. a reactionary treatment.
"Prevention" as used herein refers to any prophylactic or preventative effect. It thus includes delaying, limiting, reducing or preventing the condition (which reference includes infection and contamination, as applicable, in the different aspects of the invention) or the onset of the condition, or one or more symptoms or indications thereof, for example relative to the condition or symptom or indication prior to the prophylactic treatment. Prophylaxis thus explicitly includes both absolute prevention of occurrence or development of the condition, or symptom or indication thereof, and any delay in the onset or development of the condition or symptom or indication, or reduction or limitation on the development or progression of the condition or symptom or indication. Specifically, the alginate oligomers of the invention can be taken as a prophylactic treatment, for example to prevent, or at least minimise the risk, of infection or contamination (e.g. by a pathogen).
The aspect of the invention concerning the combating (treatment or prevention) of infection is of particular utility in the care of hospitalised patients as the risk of contracting a nosocomial infection (commonly known as hospital related/acquired infection or healthcare-associated infection), e.g. Staphylococcus aureus, Methicillin Resistant Staphylococcus aureus (MRSA), Pseudomonas aeruginosa, Acinetobacter baumannii, Stenotrophomonas maltophilia, Clostridium difficile, Mycobacterium tuberculosis and Vancomycin-Resistant Enterococcus, and Acinetobacter Iwoffii, Burkholderia cepacia, Burkholderia pseudomalleii, Burkholderia malleii, Burkholderia multivorans, Providencia stuartii can be minimised with a prophylactic regime of the alginate oligomers defined herein. This aspect of the invention is also of particular utility in the care of subjects suffering from trauma, subjects with a burn and subjects with wounds, all of which, as discussed above, are more susceptible to pathogen infection than a subject that is not affected similarly.
Generally, subjects in need of treatment or prophylaxis according to the invention will be diagnosed as suffering or at risk from the target condition, e.g. identified as having or at risk of developing an infection, in particular a non-biofilm infection.
Specifically, the alginate oligomers of the invention can be taken as a prophylactic treatment to prevent, or at least minimise the risk, of developing an infection, including for example the infection of wounds, native valve endocarditis, acute otitis media, chronic bacterial prostatitis, periodontitis, infections of the respiratory tract and lungs (e.g. cystic fibrosis, COPD, COAD, COAP, pneumonia, or other respiratory diseases, dental plaque, pneumonia, or infection of a medical (e.g. in-dwelling) medical device in particular when these infections do not involve a biofilm.
In one advantageous embodiment of the invention the alginate oligomers may be used in the methods of the invention in conjunction or combination with a second or further anti-microbial agent (hereinafter "further anti-microbial agent").
In the context of a medical use, such an anti-microbial agent may be any clinically-useful anti-microbial agent and particularly an antibiotic or an antiviral or anti-fungal agent. In the context of non-clinical uses, the anti-microbial agent may again be any anti-microbial agent used for such purposes, e.g. any disinfectant or antiseptic or cleaning or sterilising agent. The agents may be used separately, or together in the same composition, simultaneously or sequentially or separately, e.g. at any desired time interval.
Thus, by way of representative example, the further anti-microbial agent may be used after the alginate oligomer, but a preceding or simultaneous use may be beneficial in some circumstances.
The choice of anti-microbial agent will of course need to be appropriate for the surface/location undergoing treatment, but for instance anti-microbial agents, e.g. antibiotics, antifungals, antivirals, antiseptics may be used and/or sterilising conditions such as irradiation (e.g. UV, X-ray, gamma) extremes of temperature, and extremes of pH.
Representative antibiotics include, but are not limited to the aminoglycosides (e.g. amikacin, gentamicin, kanamycin, neomycin, netilmicin, streptomycin, tobramycin); the carbecephems (e.g. loracarbef); the 1st generation cephalosporins (eg cefadroxil, cefazolin, cephalexin); 2nd generation cephalosporins (e.g. cefaclor, cefamandole, cephalexin, cefoxitin, cefprozil, cefuroxime); 3rd generation cephalosporins (e.g. cefixime, cefdinir, cefditoren, cefoperazone, cefotaxime, cefpodoxime, ceftazidime, ceftibuten, ceftizoxime, ceftriaxone); 4th generation cephalosporins (e.g. cefepime); the macrolides (e.g. azithromycin, clarithromycin, dirithromycin, erythromycin.t roleandomycin); the monobactams (e.g. aztreonam); the penicillins (e.g. amoxicillin, ampicillin, carbenicillin, cloxacillin, dicloxacillin, nafcillin, oxacillin, penicillin G, penicillin V, piperacillin, ticarcillin); the polypeptide antibiotics (e.g. bacitracin, colistin, polymyxin B); the quinolones (e.g. ciprofloxacin, enoxacin, gatifloxacin, levofloxacin, lomefloxacin, moxifloxacin, norfloxacin, ofloxacin, trovafloxacin); trie sulfonamides (e.g. mafenide, sulfacetamide, sulfamethizole, sulfasalazine, sulfisoxazole, trimethoprim- sulfamethoxazole); the tetracyclines (e.g. demeclocycline, doxycycline, minocycline, oxytetracycline, tetracycline); the carbapenems (e.g. imipenem, meropenem, ertapenem, doripenem, panipenem/betamipron, biapenem, PZ-601); chloramphenicol; clindamycin, ethambutol; fosfomycin; isoniazid; linezolid; metronidazole; nitrofurantoin; pyrazinamide; quinupristin/dalfopristin; rifampin; spectinomycin; and vancomycin. The antibiotics vancomycin, tobramycin, meropenem, ciprofloxacin, piperacillin, colistin, aztreonam, ciprofloxacin and azithromycin are preferred. For example, the antibiotic may be selected from amikacin, gentamicin, kanamycin, neomycin, netilmicin, streptomycin, tobramycin, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, telithromycin, CarbomycinA, josamycin, kitasamycin, midecamicine, oleandomycin, spiramycin, tylosin, troleandomycin, aztreonam, imipenem, meropenem, ertapenem, doripenem, panipenem/betamipron, biapenem, PZ-601 , cefixime, cefdinir, cefditoren, cefoperazone, cefotaxime, cefpodoxime, ceftazidime, ceftibuten, ceftizoxime, ceftriaxone, cefepime, demeclocycline, doxycycline, minocycline, oxytetracycline, tetracycline, bacitracin, colistin, polymyxin B, ciprofloxacin, enoxacin, gatifloxacin, levofloxacin, lomefloxacin, moxifloxacin, norfloxacin, ofloxacin, and trovafloxacin. In particular, antibiotic may selected from ceftazidime, imipenem/cilastatin, meropenem, aztreonam, oxytetracycline, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin, and it is particularly preferred that the antibiotic is selected from ceftazidime, imipenem/cilastatin, meropenem, aztreonam, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin. More preferably the antibiotic is selected from aztreonam, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin.
Representative antiseptics include, but are not limited to chlorine bleach (sodium hypochlorite), quaternary ammonium compounds (e.g. benzalkonium chloride, cetyl trimethylammonium bromide, cetylpyridinium chloride), hydrogen peroxide, phenol compounds (e.g. TCP, Triclosan), alcohols (e.g. ethanol), Virkon™, iodine compunds (e.g. povidone-iodine), silver compounds (e.g. elemental silver nano/microparticles).
Antimicrobial surfactants are another class of antiseptics. These are compounds that disrupt microbial cell membranes and other structural components and therefore inhibit growth and/or viability of microorganisms. Antimicrobial surfactants and their use in antimicrobial compositions is well known in the art should further guidance be needed the discussion of antimicrobial surfactants in "Preservative-tfree and self-preserving cosmetics and drugs - Principles and practice", Ed. Kabara and Orth, Marcel Dekker, NY, NY, 1997, is explicitly incorporated by reference in its entirety. Antimicrobial surfactants may be anionic, cationic, non-ionic or amphoteric. Examples of antimicrobial anionic surfactants include, but are not limited to, sodium dodecyl sulfate (sodium lauryl sulfate), sodium dodecyl aminopropionic acid, sodium ricinoleate, bile acids, alkylaryl sulfonates, Grillosan DS7911 , disodium undecylenic acid monoethanol amidosulfosuccinate. Examples of antimicrobial cationic surfactants include, but are not limited to, the quaternary ammionium compounds, the aminimides and chlorhexidine compounds. Examples of antimicrobial non-ionic surfactants include, but are not limited to, the monoesters of fatty acids, polyethyleneglycomonoesters of alkyldihydroxybenzoic acids, glucosamine derivatives and diethanolamides of N- lauroyl dipeptides. Examples of antimicrobial amphoteric surfactants include, but are not limited to, the alkyl betaines, the alkylamidopropylbetaines, the alkyl aminopropionates, the alkyliminodipropionates and the alkylimidazolines.
Representative antifungals include, but are not limited to the polyenes (e.g. natamycin, rimocidin, filipin, nystatin, amphotericin B, candicin; the imidazoles (e.g. miconazole, ketoconazole, clotrimazole, econazole, bifonazole, butoconazole, fenticonazole, isoconazole, oxiconazole, sertaconazole, sulconazole, tioconazole); the triazoles (e.g. fluconazole, itraconazole, isavuconazole, ravuconazole, posaconazole, voriconazole.terconazole); the allylamines (e.g. terbinafine, amorolfine, naftifine, butenafine); and the echinocandins (e.g. anidulafungin, caspofungin, micafungin).
Representative antivirals include, but are not limited to abacavir, acyclovir, adefovir, amantadine, amprenavir, arbidol, atazanavir, atripla, boceprevir, cidofovir, combivir, darunavir, delavirdine, didanosine, docosanol, edoxudine, efavirenz, emtricitabine, enfuvirtide, entecavir, famciclovir, fomivirsen, fosamprenavir, foscamet, fosfonet, ganciclovir, ibacitabine , imunovir, idoxuridine, imiquimod, indinavir, inosine, interferon type III, interferon type, Il interferon type I, lamivudine, lopinavir, loviride, maraviroc, moroxydine, nelfinavir, nevirapine, nexavir, oseltamivir, penciclovir, peramivir, pleconaril, podophyllotoxin, raltegravir, ribavirin, rimantadine, ritonavir, saquinavir , stavudine , tenofovir, tenofovir disoproxil, tipranavir, trifluridine, trizivir, tromantadine, truvada, valaciclovir, valganciclovir, vicriviroc, vidarabine, viramidine, zalcitabine, zanamivir, and zidovudine
The anti-microbial agent may conveniently be applied before, simultaneously with or following the alginate oligomer. Conveniently the antimicrobial agent is applied at substantially the same time as the alginate or afterwards. For example, the anti-microbial agent is applied at least 1 hour, preferably at least 3 hours, more preferably at least 5 and most preferably at least 6 hours after the alginate oligomer is administered. In other embodiments the further antimicrobial may conveniently be applied or administered before the alginate oligomer, e.g. at least 1 hour, at least 3 hours, at least 6 hours before the alginate oligomer. In these embodiments the alginate oligomer can be applied or administered with or without a further application of the further antimicrobial. To optimise the anti-microbial effect of the anti-microbial agent the antimicrobial agent can be given (e.g. administered or delivered) repeatedly at time points appropriate for the agent used. The skilled person is able to devise a suitable dosage or usage regimen. In long term treatments the alginate oligomer can also be used repeatedly. This can be as frequently as the anti-microbial agent, but will typically be less frequently. The frequency required will depend on the location of the microorganism, colony composition and the anti-microbial used and the skilled person is able to optimise the dosage or usage patterns to optimise results.
In an advantageous embodiment the alginate oligomer may be used or applied after physical removal or reduction (e.g. debridement) of the microorganism population causing the infection at the surface undergoing treatment. In one embodiment the population will not be in a biofilm.
Following removal of, or an attempt to remove, the population, the location may be contacted with the alginate oligomers for between 0 and 24 hours, particularly 2 and 12 hours, more particularly 4 and 8 hours, most particularly 5 and 7 hours, e.g. 6 hours. Following this, an anti-microbial agent may if desired be applied. Such a scenario may be desirable or particularly applicable in a clinical setting. In the case of infected wounds the duration of incubation can be conveniently be designed to correspond to scheduled changes of the wound dressing.
Physical removal of the population can be carried out with any suitable surgical, mechanical or chemical means. Conveniently this can be the use of a liquid, gel, gel-sol, semi-solid compositions or gas applied at pressure to the population, sonication, laser, or by abrasive implement. A composition used in the removal itself or as a wash solution before, during or afterwards may conveniently contain the alginate oligomer.
Accordingly, in one specific embodiment there is provided a debridement or wash composition e.g. solution for wounds containing an alginate oligomer, particularly any alginate oligomer as herein defined for use, where appropriate, in the treatments and methods of the invention. Such a debridement composition will typically be a sterile solution, particularly an aqueous sterile solution or an oil-based sterile solution, and may additionally contain proteolysis enzymes (e.g. collagenase, trypsin, pepsin, elastase), an abrasive solid phase (e.g. colloidal silica, ground pumice, ground plant or animal shell).
Use of the alginate oligomers in combination or conjunction with immunostimulatory agents may also be beneficial in the application of the methods of the invention in a clinical situation. These immunostimulatory agents may conveniently be used at timepoints corresponding to those described above in relation to anti-microbial agents and may optionally be used in combination with an alginate oligomer and an anti-microbial agent Suitable immunostimulatory agents include, but are not limited to cytokines e.g. TNF, IL-1, IL-6, IL-8 and immunostimulatory alginates, such as high M-content alginates as described for example in US 5,169,840, WO91/11205 and WO03/045402 which are explicitly incorporated by reference herein in their entirety, but including any alginate with immunostimulatory properties.
Use of the alginate oligomers in combination or conjunction with growth factors, e.g. PDGF, FGF, EGF, TGF, hGF and enzymes may also be beneficial in the medical uses of the invention. Representative examples of suitable enzymes include but are not limited to proteases, e.g. serine proteases, metalloproteases and cysteine proteases (examples of these types of proteases are listed in EP0590746, the entire contents of which are incorporated herein by reference); nucleases, e.g. DNase I and II, RNase A, H, I, II, III, P, PhyM, R; lipases and enzymes capable of degrading polysaccharides.
Use of the alginate oligomers in combination or conjunction with a physiologically tolerable mucosal viscosity reducing agent could also be beneficial, e.g. a nucleic acid cleaving enzyme (e.g. a DNase such as DNase I), gelsolin, a thiol reducing agent, an acetylcysteine, sodium chloride, an uncharged low molecular weight polysaccharide (e.g. dextran), arginine (or other nitric oxide precursors or synthesis stimulators), or an anionic polyamino acid (e.g. poly ASP or poly GLU). Ambroxol, romhexine, carbocisteine, domiodol, eprazinone.erdosteine, letosteine, mesna, neltenexine, sobrerol, stepronin, tiopronin are specific mucolytics of note.
Use of the alginate oligomers in combination or conjunction with alpha blockers may also be beneficial in the medical uses of the invention, in the treatment of chronic bacterial prostatitis especially. Representative examples of suitable alpha blockers include but are not limited to the selective alpha-1 blockers (e.g. doxazosin, dilodosin, prazosin, tamsυlosin, alfυzosin, terazosin), and the nonselective adrenergic blockers (e.g. phenoxybenzamine, phentolamine).
Use of the alginate oligomers in combination or conjunction with bronchodilators may also be beneficial in the medical uses of the invention, in the treatment of respiratory diseases associated with MDR bacteria especially (which may include COPD, COAD, COAP, pneumonia, cystic fibrosis, emphysema and asthma). Representative examples of suitable bronchodilators include but are not limited to the β2 agonists (e.g. pirbuterol, epinephrine, salbutamol, salmeterol, levosalbutamol, clenbuterol), the anticholinergics (e.g. ipratropium, oxitropium, tiotropium) and theophylline.
Use of the alginate oligomers in combination or conjunction with corticosteroids may also be beneficial in the medical uses of the invention, in the treatment of respiratory diseases associated with MDR bacteria especially (which may include COPD, COAD, COAP, pneumonia, cystic fibrosis, emphysema and asthma). Representative examples of suitable corticosteroids include but are not limited to prednisone, flunisolide, triamcinolone, fluticasone, budesonide, mometasone, beclomethasone, amcinonide, budesonide, desonide, fluocinonide, fluocinolone, halcinonide. hydrocortisone, cortisone, tixocortol, prednisolone, methylprednisolone, prednisone, betamethasone, dexamethasone, fluocortolone, aclometasone, prednicarbate, clobetasone, clobetasol, and fluprednidene.
The alginate oligomers may be used optionally with any other therapeutically active agent it may be desired to use, e.g. an anti-microbial agent, an anti-inflammatory agent, an immunostimulatory agent, a mucosal viscosity reducing agent, a growth inhibitor or an enzyme or an alpha blocker, a bronchodilator or a corticosteroid. The combined use of an alginate oligomer with a further therapeutically active agent (e.g. an anti-microbial or anti-inflammatory agent, an immunostimulatory agent, a mucosal viscosity reducing agent, a growth inhibitor or an enzyme or an alpha blocker, a bronchodilator or a corticosteroid) may improve the clinical effects of the active agent and this may advantageously allow the dose (e.g. the usual or normal dose) of the further therapeutically active agent to be reduced e.g. It may be used at its normal or usual dose or at a lower dose, for example at up to 50% (or at 50%) of its normal dose.
The invention encompasses the use of a single alginate oligomer or a mixture (multiplicity/plurality) of different alginate oligomers. Thus, for example, a combination of different alginate oligomers (e.g. two or more) may be used. In the case of medical use, the alginates of the invention may be administered to the subject in any convenient form or by any convenient means, e.g. by topical, oral, parenteral, enteral, parenteral routes or by inhalation. Preferably the alginate will be administered by topical, oral or parenteral routes or by inhalation. -
The skilled man will be able to formulate the alginates of the invention into pharmaceutical compositions that are adapted for these routes of administration according to any of the conventional methods known in the art and widely described in the literature. Merely for guidance only, Examples 4 and 5 describe two possible compositions (a topical composition and a debridement liquid).
The present invention therefore also provides a pharmaceutical composition for use in the above mentioned treatments and methods comprising an alginate oligomer as defined herein together with at least one pharmaceutically acceptable carrier, diluent or excipient.
The active ingredient may be incorporated, optionally together with other active agents, with one or more conventional carriers, diluents and/or excipients, to produce conventional galenic preparations such as tablets, pills, powders (e.g. inhalable powders), lozenges, sachets, cachets, elixirs, suspensions, emulsions, solutions, syrups, aerosols (as a solid or in a liquid medium), sprays (e.g. nasal sprays), compositions for use in nebulisers, ointments, soft and hard gelatine capsules, suppositories, sterile injectable solutions, sterile packaged powders, and the like. Sterile inhalable compositions are of particular note for use in the treatment of respiratory diseases associated with microorganisms (which may include COPD, COAD, COAP, pneumonia, cystic fibrosis, emphysema and asthma).
Examples of suitable carriers, excipients, and diluents are lactose, dextrose, sucrose, sorbitol, mannitol, starches, gum acacia, calcium phosphate, inert alginates, tragacanth, gelatine, calcium silicate, microcrystalline cellulose, polyvinylpyrrolidone, cellulose, water syrup, water, water/ethanol, water/ glycol, water/polyethylene, hypertonic salt water, glycol, propylene glycol, methyl cellulose, methylhydroxybenzoates, propyl hydroxybenzoates, talc, magnesium stearate, mineral oil or fatty substances such as hard fat or suitable mixtures thereof. Excipients and diluents of note are mannitol and hypertonic salt water (saline). The compositions may additionally include lubricating agents, wetting agents, emulsifying agents, suspending agents, preserving agents, sweetening agents, flavouring agents, and the like.
As discussed above, the alginate oligomers proposed for use according to the invention may be used in combination with other therapeutic agents, for example to be administered together, in a single pharmaceutical formulation or composition, or separately (i.e. for separate, sequential or simultaneous administration). Thus, the alginate oligomers of the invention may be combined with a second (or further) therapeutically active agent, e.g. in a pharmaceutical kit or as a combined ("combination") product.
Thus a further aspect of the present invention provides a product containing an alginate oligomer as defined herein and a second active agent as a combined preparation for separate, simultaneous or sequential application to a microorganism and/or administration to a subject or location or surface for use in inhibiting the adherence of a microorganism to a surface; combating a population of microorganisms on a surface or location underlying a surface; combating contamination of a surface or a location underlying a surface with a microorganism; and/or combating the infection of a surface or a location underlying a surface in a subject or any of the conditions defined herein.
Additional therapeutically active agents may be included in the pharmaceutical compositions, as discussed in relation to combination therapies above.
Thus the invention provides products (e.g. a pharmaceutical kit or a combined ("combination") product) or compositions (e.g. a pharmaceutical composition) including those described herein wherein the product or composition comprises an alginate oligomer as herein defined and a further active agent e.g. a therapeutically active agent, such as an anti-microbial agent e.g. an antibiotic, an immunostimulatory agent, a growth factor, a mucosal viscosity-reducing agent, an agent effective in the treatment of respiratory diseases e.g. a bronchodilator, or an anti-inflammatory agent e.g. an anti-inflammatory steroid. The antibiotic may be a macrolide antibiotic, e.g. selected from the group azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, telithrorηycin, CarbomycinA, josamycin, kitasamycin, midecamicine, oleandomycin, spiramycin, troleandromycin, tylosin. Preferably the macrolide antibiotic is an azalide macrolide, preferably azithromycin. The invention also provides products (e.g. a pharmaceutical kit or a combined ("combination") product) or compositions (e.g. a pharmaceutical composition) including those described herein wherein the product or composition comprises an alginate oligomer as herein defined and an antibiotic selected from amikacin, gentamicin, kanamycin, neomycin, netilmicin, streptomycin, tobramycin, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, telithromycin, CarbomycinA, josamycin, kitasamycin, midecamicine, oleandomycin, spiramycin, tylosin, troleandomycin, aztreonam, imipenem, meropenem, ertapenem, doripenem, panipenem/betamipron, biapenem, PZ-601 , cefixime, cefdinir, cefditoren, cefoperazone, cefotaxime, cefpodoxime, ceftazidime, ceftibuten, ceftizoxime, ceftriaxone, cefepime, demeclocycline, doxycycline, minocycline, oxytetracycline, tetracycline, bacitracin, colistin, polymyxin B, ciprofloxacin, enoxacih, gatifloxacin, levofloxacin, lomefloxacin, moxifloxacin, norfloxacin, ofloxacin, and trovafloxacin. In particular, antibiotic may selected from ceftazidime, imipenem/cilastatin, meropenem, aztreonam, oxytetracycline, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin, and it is particularly preferred that the antibiotic is selected from ceftazidime, imipenem/cilastatin, meropenem, aztreonam, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin. • More preferably the antibiotic is selected from aztreonam, azithromycin, clarithromycin, dirithromycin, erythromycin, roxithromycin, spiramycin and ciprofloxacin.
These products and compositions are specifically contemplated as for use in the methods of the invention. The products and compositions can be pharmaceutical or non-pharmaceutical. Therefore the products and compositions of this aspect of the invention can be used in any of the methods of the invention. The use of alginate oligomers as herein defined to manufacture such pharmaceutical products and pharmaceutical compositions for use in the medical methods of the invention is also contemplated.
The above and following discussion of additional active agents and excipients and the like is directly applicable in its entirety to these embodiments of the invention. The relative content of the alginate oligomer and the further active agent, for example antibiotic, e.g. macrolide antibiotic can vary depending on the dosage required and the dosage regime being followed and this will depend on the subject to be treated and the location and identity/constituents of the bacterium, contamination or population. Preferably the composition or product will comprise sufficient alginate oligomer that upon administration to a subject or application to a location, the local concentration of the oligomer will be at least 2%, preferably at least 4%, 6% or 8% and most preferably at least 10% (weight by volume). The antibiotic, e.g. macrolide antibiotic preferably will be present in an amount that is sufficient to provide a local concentration of at least 0.03125, 0.0625, 0.125, 0.25, 0.5, 1 , 2, 4, 8, 16, 64, 128, 256, or 512, 1024, 2048 or 4096 μg/ml. The skilled man would know that the amounts of alginate oligomer and/or active agent e.g. antibiotic, e.g. macrolide antibiotic can be reduced if a multiple dosing regime is followed or increased to minimise the number of administrations or applications. As mentioned above, the alginate oligomers of the invention may allow the dose of the antibiotic to be reduced.
The compositions and products of this aspect will typically comprise between 1% and 99%, 5% and 95%, 10% and 90% or 25% and 75% alginate oligomer and 1% and 99%, 5% and 95%, 10% and 90% or 25% and 75% antibiotic, e.g. macrolide antibiotic, allowance being made for other ingredients.
Parenterally administrable forms, e.g., intravenous solutions, should be sterile and free from physiologically unacceptable agents, and should have low osmolarity to minimize irritation or other adverse effects upon administration and thus solutions should preferably be isotonic or slightly hypertonic, e.g. hypertonic salt water (saline). Suitable vehicles include aqueous vehicles customarily used for administering parenteral solutions such as Sodium Chloride Injection, Ringer's Injection, Dextrose Injection, Dextrose and Sodium Chloride Injection, Lactated Ringer's Injection and other solutions such as are described in Remington's Pharmaceutical Sciences, 15th ed., Easton: Mack Publishing Co., pp. 1405-1412 and 1461-1487 (1975) and The National Formulary XIV, 14th ed. Washington: American Pharmaceutical Association (1975). The solutions can contain preservatives, antimicrobial agents, buffers and antioxidants conventionally used for parenteral solutions, excipients and other additives which are compatible with the biopolymers and which will not interfere with the manufacture, storage or use of products.
For topical administration the alginate oligomer can be incorporated into creams, ointments, gels, transdermal patches and the like. The alginate oligomers can also be incorporated into medical dressings, for example wound dressings e.g. woven (e.g. fabric) dressings or non-woven dressings (e.g. gels or dressings with a gel component). The use of alginate polymers in dressings is known, and such dressings, or indeed any dressings, may further incorporate the alginate oligomers of the invention.
Accordingly, in a further specific embodiment, the invention further provides a wound dressing comprising an alginate oligomer (which may be any alginate oligomer as herein defined) for use, where appropriate, in the treatments and methods of the invention.
Further topical systems that are envisaged to be suitable are in situ drug delivery systems, for example gels where solid, semi-solid, amorphous or liquid crystalline gel matrices are formed in situ and which may comprise the alginate oligomer. Such matrices can conveniently be designed to control the release of the alginate oligomer from the matrix, e.g. release can be delayed and/or sustained over a chosen period of time. Such systems may form gels only upon contact with biological tissues or fluids. Typically the gels are bioadhesive. Delivery to any body site that can retain or be adapted to retain the pre-gel composition can be targeted by such a delivery technique. Such systems are described in WO 2005/023176.
For application to oral, buccal and dental surfaces, toothpastes, dental gels, dental foams and mouthwashes are mentioned specifically. Thus, in one particular aspect is included an oral health care, or oral hygiene, composition, comprising an alginate (which may be any alginate oligomer as defined herein), particularly a mouthwash, toothpaste, dental gel or dental foam for use, where appropriate, in the treatments and methods of the invention. lnhalable compositions are also of note. The formulation of compositions suitable for inhalation is routine for the skilled man and has long been standard practice in the treatment of respiratory diseases, lnhalable compositions may, for instance, take the form of inhalable powders, solutions or suspensions. The skilled man would be able to select the most appropriate type of delivery system for his needs and be able to prepare a suitable formulation of the alginates of the invention for use in that system. Propellant-free nebulisable solutions and inhalable powder formulations are particularly preferred.
As noted above, a preferred composition of the invention is a debridement composition that is used in a debridement process to remove an infection colony or population, for example from a tissue. Typically such a composition will be liquid, but gels, gel-sols, or semi-solid compositions might be used. The composition might be used to debride the microorganism population (e.g. by application to the tissue under pressure) and/or may be used to bathe the tissue before, during and/or after debridement by other means such as by surgical, mechanical or chemical processes. The skilled person is readily able to formulate debridement compositions in accordance with the invention.
In some instances it may be beneficial to administer the alginate oligomers as defined herein to animals, e.g. to promote weight gain/growth. Administration can be achieved in the form of the pharmaceutical compositions described herein, but conveniently the alginate oligomers as defined herein may be used as a conventional feed additive, i.e. a compound that is added to animal feed in small, nutritionally inconsequential amounts. The use of feed additives in animal feeds is well established and it would be entirely routine for a skilled man to determine and use appropriate amounts of the alginates of the invention to achieve the desired effects, e.g. weight gain/growth.
In the "case of microorganisms on an inanimate surface or in a location underlying the inanimate surface, the alginate oligomer may be applied to the surface to be treated in any convenient composition or formulation, or by any convenient means. Thus the alginate oligomer may be in liquid, gel, gel-sol, semisolid or solid form (e.g. solutions, suspensions, homogenates, emulsions, pastes, powders, aerosols, vapours). Typically the compositions for treating such inanimate surfaces or materials will be a non-pharmaceutically acceptable composition. The choice of composition form will be dictated by the identity of the microorganism, the material of the surface and the surrounding environment or locality of the surface. For instance, if the surface is part of a fluid line it might be convenient to apply a fluid composition. It might also be preferred to use a composition that persists on the surface or in the part of the fluid line to be treated but that will not leach into the fluid of normal use, e.g. an adhesive gel. The skilled person is readily able to prepare suitable compositions from his common general knowledge. For instance, the alginate oligomer may be added to a paint formulation and applied to the surface to be treated, e.g. a boat hull or other part of a boat's structure that is exposed to water, or to a building or any part thereof, a tank (e.g. a storage or processing tank) or indeed to any part of any industrial machinery. Such compositions may conveniently also comprise an anti-microbial agent, as described above, e.g. an antibiotic, chlorine bleach, TCP, ethanol, Virkon™, povidone-iodine, silver compounds, antimicrobial surfactants, etc. As the compositions need not be pharmaceutically acceptable, harsher antimicrobials can De used subject to considerations of surface damage, environmental contamination, jser safety and contamination of the treated surface and interaction with the other components of the composition.
The compositions of the invention may be formulated so as to provide quick, sustained or delayed release of the active ingredient after administration to the subject/surface by employing procedures well known in the art. Adhesive compositions are also preferred. Adhesive, sustained and/or delayed release Formulations may be particularly convenient as it is preferred that surfaces are pretreated with the alginate oligomers of the invention prior to exposure, or prior to new or further exposure, to microorganisms in order to prevent contamination.
In a further aspect the invention provides products susceptible to microorganism contamination/colonisation whose susceptible surfaces have been pretreated with an alginate oligomer as defined herein.
By "pretreated" it is meant that the susceptible surface is exposed to an alginate oligomer prior to an exposure to a microorganism and that the alginate oligomer persists on the surface for a duration sufficient to prevent contamination/colonisation by a microorganism for an appreciable duration of time. Preferably the alginate oligomer will persist for substantially the useful life of the surface, e.g. the pretreatment results in a substantially permanent coating of an alginate oligomer. Thus a pre-treated surface/product is one to which the alginate oligomer is applied and on which it remains. Such a product/surface may be a coated product/surface.
Non-limiting examples of products and surfaces susceptible to microorganism contamination/colonisation are described above. Particular mention may be made of medical and surgical devices and food or drink processing, storage or dispensing equipment. Pretreatment can be achieved by any convenient means, for example any form of applying the alginate oligomer to the surface, notably coating the surface, e.g. spray drying, polymer coating with a polymer incorporating the alginate oligomer, and painting, varnishing or lacquering with paint, varnish or lacquer formulations containing the alginate oligomer. Such a "coating" composition (e.g. a paint, varnish or lacquer) containing an alginate oligomer represents a further aspect of the present invention. Alternatively, the alginate oligomer can be incorporated into the material from which the object or its susceptible parts are manufactured. This approach is suited to objects, or constituent parts thereof, manufactured from polymers such as plastics and silicones, e.g. the medical devices and surgical described above.
Products comprising an inanimate surface comprising an alginate oligomer coating or coating composition, or incorporating an alginate oligomer are therefore contemplated. Non-limiting examples of such products and surfaces are described above. Of particular note are medical and surgical devices. This may include any kind of line, including catheters (e.g. central venous and urinary catheters), prosthetic devices e.g., heart valves, artificial joints, false teeth, dental crowns, dental caps and soft tissue implants (e.g. breast, buttock and lip implants). Any kind of implantable (or "in-dwelling") medical device is included (e.g. stents, intrauterine devices, pacemakers, intubation tubes (e.g. endotracheal or tracheostomy tubes), prostheses or prosthetic devices, lines or catheters). Further products include food processing, storage, dispensing or preparation equipment or surfaces, tanks, conveyors, floors, drains, coolers, freezers, equipment surfaces, walls, valves, belts, pipes, air conditioning conduits, cooling apparatus, food or drink dispensing lines, heat exchangers, boat hulls or any part of a boat's structure that is exposed to water, dental waterlines, oil drilling conduits, contact lenses and storage cases.
The invention will be further described with reference to the following non- limiting Examples in which:
Figure 1 shows adherence to titanium discs of Staphylococcus aureus NCTC 6571 stained with the LIVE-DEAD stain showing. A: untreated disc without bacteria; B: washed bacteria without disc; C untreated disc with bacteria; D: disc pretreated with 2% G-fragments (Oligo CF-5/20 90-95%G); E: disc pretreated with 6% G- fragments; F: disc pretreated with 10% G-fragments. Magnification: 2Ox.
Figure 2 shows adherence to acrylic discs of Staphylococcus aureus NCTC 6571 stained with the LIVE-DEAD. A: untreated disc with bacteria; B: disc pretreated with 0.2% chlorhexidine digluconate; C: disc pretreated with 2% G- fragments (Oligo CF-5/20 90-95%G); D: disc pretreated with 6% G-fragments; E: disc pretreated with 10% G-fragments. Magnification: 2Ox.
Figure 3 shows a graph displaying the number of colony forming units of per ml (CFU ml"1) of Staphylococcus aureus NCTC 6571 obtained from untreated acrylic discs or acrylic discs pretreated with G-fragments (Oligo CF-5/20 90-95%G) at concentrations of 2%, 6% and 10% or 0.2% chlorhexidine digluconate.
EXAMPLES
Example 1 - Preparation of samples for adherence assays
2 sets of unpolished, autoclaved titanium discs and two sets of autoclaved colourless clear acrylic discs were placed in the wells of a 24-well plate and immersed in 500μl of 2%, 6% or 10% G-fragments (oligo CF-5/20 90-95%G) or 0.2% chlorhexidine digluconate (acrylic discs only) in water. The plate was incubated overnight at 370C with tilting. Meanwhile BHI was inoculated with Oxford Staphylococcus (Staphylococcus aureus NCTC 6571 ) and cultured at 370C, overnight.
Aliquots (6.5ml) of the overnight Oxford Staphylococcus culture were placed in 2 Universale and centrifuged at 3500 rpm for 3 mins, room temp. Supernatants were removed from each Universal so that the cell pellet remained. Cell pellets were resuspended in 10ml 0.85% NaCI and centrifuged at 3500 rpm for 3 mins, RT. Supernatants were again removed, cells were resuspended in 10ml 0.85% NaCI and centrifuged at 3500 rpm for 3 mins, RT. Supernatants were removed, cell pellets were each resuspended in 6ml 0.85% NaCI and pooled, final volume 12 ml.
Discs were removed from overnight immersion in G-fragments or 0.2% chlorhexidine digluconate (acrylic discs only) and placed into empty wells of a new 24-well plate. Washed Oxford Staphylococcus (500μl) were added to the discs. As a control, untreated discs were also seeded with bacteria. Discs were incubated at 37°C for 1 hour at RT with tilting.
Example 2 - LIVE/DEAD staining of bacteria adhered to discs
After 1 hour, each disc from one set of discs was removed from each well and washed with 2ml 0.85% NaCI then placed into an empty well of a new 24-well plate. Cells were stained with Live/Dead® BacLight™ stain (Bacterial Viability Kit, Invitrogen Ltd). The live/dead stain consists of two nucleic acid stains: The green fluorescent SYTO9 and the red-fluorescent propidium iodide which are used in combination to discriminate live and dead bacteria in a mixed population. Bacterial cells with a compromised membrane (those that are considered to be dead or dying) stain red, whereas cells with an intact membrane appear green.
2μl of each stain was added to 2ml 0.85% NaCI and 200μl of the mixture was added to each disc. Additionally, control untreated discs (autoclaved and unpolished) were stained. Washed, neat bacteria (no disc) were also stained. Samples were incubated in the dark for 15 minutes. Discs were removed from wells and washed with 2ml 0.85% NaCI then placed on to glass slides, covered with glass coverslips and then analysed by confocal laser scanning microscopy (CLSM). Results are displayed in Figures 1 and 2. These images show that G-fragments substantially reduce the number of Staphylococcus aureus NCTC 6571 that adhere to titanium or acrylic surfaces after incubation for 1 hr.
Example 3- Miles-Misra protocol to determine number of CFU on discs
After 1 hour, each disc from one set of discs was removed from each well and washed with 2ml 0.85% NaCI. Discs were placed into separate Bijou tubes and 500μl 0.85% NaCI added. Tubes were vortexed for 1 minute and the vortexed solution was used to prepare serial dilutions in 0.85% NaCI. Three 20 μl aliquots of each dilution were dropped on blood agar plates as stipulated in the protocol. The plates were incubated for 18 - 24 hours at 370C and observed for growth. Sectors where more than 20 colonies were present without any confluence were utilized to make the viable counts (Miles, A.A & Misra, S.S. (1938). J. Hyg. (London), 38, 732). Results are shown in Figure 3 (acrylic discs) and Table 1 (titanium discs).
Table 1
Figure imgf000060_0001
As can be seen G-fragments substantially reduce the number of Staphylococcus aureus NCTC 6571 that adhere to titanium or acrylic surfaces after incubation for 1hr.
Example 4 - Topical composition comprising alginate oligomer
An example of a topical composition (a moisturising skincare body lotion) comprising an alginate oligomer is prepared with the following ingredients.
Oil phase:
Mineral oil 3%
Cyclomethicone 4% lsopropyl myristate 3%
Stearic acid 1.8%
Cetyl alcohol 1.0%
Glyceryl stearate 1.5%
Water phase:
Carbomer 984 0.10%
Glycerine 3%
Thriethanolamine 0.90%
Alginate oligomer 0.1%
Water 81.60%
Example 5- Debridement composition comprising alginate oligomer
An example of a liquid debridement composition comprising an alginate oligomer is prepared with the following ingredients.
Castor oil 77.8%
Balsam of Peru refined grade 10%
Collagenase 0.2%
ZnCI 0.5%
Water 5%
Polyoxyethylene (10 )oleyl ether 4% Colloidal silica 2%
Alginate oligomer 0.5%

Claims

Claims
1. A method for inhibiting the adherence of a microorganism to a surface, said method comprising contacting said microorganism and/or the surface with an alginate oligomer, wherein said alginate oligomer has a number average degree of polymerisation of 8-50 and wherein at least 90% of the monomer residues are guluronate.
2. The method of claim 1 , wherein said surface is an animate or inanimate surface.
3. The method of any one of claims 1 or 2, wherein the surface is selected from surfaces of food or drink processing, preparation, storage or dispensing machinery or equipment, surfaces of air conditioning apparatus, surfaces of industrial machinery, surfaces of storage tanks, surfaces of medical or surgical equipment, surfaces of aquatic/marine equipment or the surfaces of buildings and other structures.
4. The method of claim 3 wherein the surface is selected from food processing, storage, dispensing or preparation equipment or surfaces, tanks, conveyors, floors, drains, coolers, freezers, equipment surfaces, walls, valves, belts, pipes, air conditioning conduits, cooling apparatus, food or drink dispensing lines, heat exchangers, boat hulls, dental waterlines, oil drilling conduits, contact lenses, contact lens storage cases, catheters, prosthetic devices or implantable medical devices.
5. An alginate oligomer for use in inhibiting the adherence of a microorganism to a surface in a subject, wherein said alginate oligomer has a number average degree of polymerisation of 8-50 and wherein at least 90% of the monomer residues are guluronate.
6. The method or alginate oligomer of any one of claims 1 to 5, wherein the microorganism is in a non-biofilm mode of growth.
7. An alginate oligomer for use in combating a microbial infection on a surface, or at a location underlying a surface in a subject, wherein the microorganism of said infection is not growing in or on a biofilm and, wherein said alginate oligomer has a number average degree of polymerisation of 8-50 and wherein at least 90% of the monomer residues are guluronate.
8. The method or alginate oligomer of any one of claims 1 to 7, wherein the microorganism is a prokaryotic or eukaryotic microorganism.
9. The method or alginate oligomer of claim 8 wherein the prokaryotic or eukaryotic microorganism is selected from bacteria, archaeobacteria, fungi or algae.
10. The method or alginate oligomer of any one of claims 1 or 9, wherein at least 95% of the monomer residues of the alginate oligomer are guluronate, preferably wherein at least 98% of the monomer residues of the alginate oligomer are guluronate.
11. The method or alginate oligomer of any one of claims 1 to 10, wherein at least 90% of the guluronate residues of the alginate oligomer are linked 1-4 to another guluronate residue.
12. The method or alginate oligomer of any one of claims 1 to 11 , wherein the alginate oligomer has a number average degree of polymerisation of 10-50, preferably 14 to 50.
13. The method or alginate oligomer of any one of claims 1 to 12, wherein the alginate oligomer is substantially free of alginate oligomers having a degree of polymerisation outside of said average degree of polymerisation.
14. The method or alginate oligomer of any one of claims 1 to 13, wherein the terminal uronic acid residues of the alginate oligomer do not have a double bond
15. The method or alginate oligomer of any one of claims 1 to 14, wherein the alginate oligomer is prepared by acid hydrolysis of an alginate polysaccharide.
16. The alginate oligomer of any one of claims 5 to 15, wherein the microorganism or the microbial infection is in or on an internal or external body surface and/or a body tissue.
17. The alginate oligomer of claim 16 wherein the internal or external body surface is selected from a surface in the oral cavity, the reproductive tract, the urinary tract, the respiratory tract, the gastrointestinal tract, the peritoneum, the middle ear, the prostate, vascular intima, the eye, including the conjunctiva or corneal tissue, lung tissue, heart valves, skin, scalp, nails, the interior of wounds or the surface of adrenal, hepatic, renal, pancreatic, pituitary, thyroid, immune, ovarian, testicular, prostate, endometrial, ocular, mammary, adipose, epithelial, endothelial, neural, muscle, pulmonary, epidermis or osseous tissue.
18. The alginate oligomer of claim 16 wherein the body tissue is selected from adrenal, hepatic, renal, pancreatic, pituitary, thyroid, immune, ovarian, testicular, prostate, endometrial, ocular, mammary, adipose, epithelial, endothelial, neural, muscle, pulmonary, epidermis or osseous tissue.
19. The alginate oligomer of any one of claims 5 to 18 wherein the subject is selected from a subject with a pre-established infection, an immunocompromised subject, a subject undergoing intensive or critical care, a subject suffering from trauma, a subject with a burn, a subject with an acute and/or chronic wound, a neonatal subject, an elderly subject, a subject with cancer, a subject suffering from an auto-immune condition, a subject with reduced or abrogated epithelial or endothelial secretion and/or secretion clearance or a subject fitted with a medical device.
20. The alginate oligomer of claim 19 wherein the subject is selected from a subject with a condition selected from HIV, sepsis, septic shock, AIDS, a cancer of the immune system, rheumatoid arthritis, diabetes mellitus type I, Crohn's disease, COPD, bronchitis, cystic fibrosis, emphysema, lung cancer, asthma, pneumonia and sinusitis, a subject preparing for, undergoing, or recovering from chemotherapy and/or radiotherapy, an organ transplant subject, a subject resident in a healthcare institution or a smoker.
21. The method or alginate oligomer of any one of claims 1 to 20, wherein said alginate oligomer is used in combination with an anti-microbial agent.
22 A product containing an alginate oligomer as defined in any one of claims 1 , 5 to 7 and 10 to 15 and a second active agent as a combined preparation for separate, simultaneous or sequential use in inhibiting the adherence of a microorganism to a surface or in combating a non-biofilm infection in a subject.
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